The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013114	Staphylococcus equorum strain KS1039, complete genome	2822193	573924	580411	2822193		Salmonella_phage(16.67%)	8	NA	NA
WP_002512089.1|573924_574989_+	glycosyltransferase family 2 protein	NA	A8CG95	Salmonella_phage	40.3	4.5e-57
WP_002508325.1|575484_575736_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_002508324.1|575800_576394_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002508323.1|576629_577346_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.4	4.7e-50
WP_021339423.1|577338_577764_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	24.4	1.4e-06
WP_056935358.1|577765_578437_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	56.0	6.3e-65
WP_056935359.1|578691_579285_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	45.1	9.8e-38
WP_056935360.1|579268_580411_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	33.0	1.7e-22
>prophage 2
NZ_CP013114	Staphylococcus equorum strain KS1039, complete genome	2822193	588937	609059	2822193		uncultured_Caudovirales_phage(35.71%)	16	NA	NA
WP_002508312.1|588937_590716_+	DNA helicase RecQ	NA	M1PGQ0	Moumouvirus	37.4	2.0e-78
WP_056935364.1|590906_591872_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.8	1.3e-26
WP_002508310.1|591868_593383_+	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA	NA
WP_002508309.1|593575_594631_+	histidinol-phosphate transaminase	NA	A0A142C026	Faustovirus	24.7	2.4e-18
WP_002508308.1|594900_595449_+	5'-3'-deoxyribonucleotidase	NA	A0A0A0PKY7	Bacillus_phage	37.2	6.5e-28
WP_081035702.1|595650_596598_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	24.2	1.9e-11
WP_056935366.1|596779_598288_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	34.4	2.9e-70
WP_002508305.1|598544_600059_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	35.6	2.0e-71
WP_002508304.1|600349_600850_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	72.3	5.4e-53
WP_002508303.1|600864_601752_-	DMT family transporter	NA	NA	NA	NA	NA
WP_002512096.1|602462_602861_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	74.2	1.6e-52
WP_056935367.1|602823_604929_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	90.0	0.0e+00
WP_002508300.1|605045_606014_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	90.1	1.9e-171
WP_002512098.1|606344_607313_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.6	3.4e-136
WP_002508297.1|607302_608262_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	52.0	2.1e-05
WP_021339445.1|608258_609059_+	ATP-binding cassette domain-containing protein	NA	W5SAS9	Pithovirus	29.8	1.3e-13
>prophage 3
NZ_CP013114	Staphylococcus equorum strain KS1039, complete genome	2822193	866612	875088	2822193		Synechococcus_phage(50.0%)	9	NA	NA
WP_056935453.1|866612_867095_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.7	1.3e-19
WP_056935454.1|867081_868215_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_002512261.1|868214_868916_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	G8EYA2	Synechococcus_phage	40.8	4.4e-45
WP_002508031.1|868918_869179_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_056935455.1|869178_869850_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_056935456.1|869842_872032_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.0	7.6e-136
WP_021338640.1|872010_873498_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.3	3.6e-44
WP_056935457.1|873490_874519_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	M4QRQ6	Synechococcus_phage	42.5	5.8e-62
WP_002508026.1|874521_875088_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.8	3.6e-29
>prophage 4
NZ_CP013114	Staphylococcus equorum strain KS1039, complete genome	2822193	1003136	1042300	2822193	head,portal,integrase,capsid,tail,terminase	Staphylococcus_phage(62.79%)	58	1006733:1006755	1049371:1049393
WP_002507907.1|1003136_1004345_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	33.5	1.6e-42
WP_021338708.1|1004346_1006755_+	primosomal protein N'	NA	NA	NA	NA	NA
1006733:1006755	attL	TTAATCCCCAAATGATGATGTAA	NA	NA	NA	NA
WP_056935496.1|1006844_1008050_-|integrase	site-specific integrase	integrase	A7YGM7	Staphylococcus_virus	64.7	4.8e-148
WP_056935497.1|1008269_1008689_-	hypothetical protein	NA	NA	NA	NA	NA
WP_056935498.1|1008769_1009375_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0F6N3H6	Staphylococcus_phage	38.2	1.5e-33
WP_056935499.1|1009390_1009732_-	helix-turn-helix transcriptional regulator	NA	R4IH08	Staphylococcus_phage	57.3	7.9e-32
WP_056935500.1|1010088_1010274_+	helix-turn-helix transcriptional regulator	NA	A0A0F6N3M9	Staphylococcus_phage	50.9	1.5e-05
WP_056935501.1|1010288_1011062_+	transcriptional regulator	NA	A1BTY9	Staphylococcus_virus	80.5	8.4e-114
WP_056935502.1|1011073_1011298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_056935503.1|1011294_1011660_-	hypothetical protein	NA	NA	NA	NA	NA
WP_056935504.1|1012247_1012514_+	helix-turn-helix domain-containing protein	NA	M1SVD9	Staphylococcus_phage	46.0	3.2e-12
WP_056935505.1|1012525_1012711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_056935506.1|1012768_1013035_+	DUF1108 family protein	NA	A0A2H4PQR7	Staphylococcus_phage	47.7	1.2e-14
WP_056935507.1|1013028_1013283_+	DUF2483 domain-containing protein	NA	A0A2H4J1Y9	uncultured_Caudovirales_phage	70.2	8.2e-26
WP_056935508.1|1013275_1014043_+	ATP-binding protein	NA	Q8SDW5	Staphylococcus_phage	84.3	1.0e-119
WP_155492518.1|1014074_1014251_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_056935510.1|1014254_1014818_+	hypothetical protein	NA	A7TWM8	Staphylococcus_phage	78.1	1.5e-80
WP_056935511.1|1014829_1015498_+	hypothetical protein	NA	A0A1W6JPR0	Staphylococcus_phage	79.2	1.3e-102
WP_056935512.1|1015494_1015749_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_056935513.1|1015735_1016476_+	hypothetical protein	NA	A0A2H4J864	uncultured_Caudovirales_phage	66.3	8.2e-58
WP_056935514.1|1016486_1017260_+	AAA domain-containing protein	NA	A0A1W6JP70	Staphylococcus_phage	81.9	8.4e-106
WP_056935515.1|1017415_1017634_+	hypothetical protein	NA	NA	NA	NA	NA
WP_046465221.1|1017638_1018049_+	RusA family crossover junction endodeoxyribonuclease	NA	D2JGK8	Staphylococcus_phage	69.4	2.9e-44
WP_046465222.1|1018041_1018236_+	hypothetical protein	NA	NA	NA	NA	NA
WP_046465223.1|1018248_1018599_+	hypothetical protein	NA	A0A2H4JAY2	uncultured_Caudovirales_phage	49.1	6.4e-29
WP_056935516.1|1018599_1018848_+	hypothetical protein	NA	A0A2H4JE87	uncultured_Caudovirales_phage	55.9	1.3e-12
WP_056935517.1|1018853_1019084_+	hypothetical protein	NA	NA	NA	NA	NA
WP_056935518.1|1019080_1019278_+	hypothetical protein	NA	A0A2H4JAZ1	uncultured_Caudovirales_phage	59.4	1.4e-12
WP_081035705.1|1019356_1019587_+	hypothetical protein	NA	A0A2R3ZXL6	Staphylococcus_phage	71.8	2.2e-25
WP_056935520.1|1019624_1020134_+	hypothetical protein	NA	A0A2H4J5L2	uncultured_Caudovirales_phage	54.0	5.7e-18
WP_056935521.1|1020134_1020389_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002512142.1|1020581_1020881_+	phage protein	NA	U3PBR4	Staphylococcus_phage	91.9	2.5e-45
WP_141714480.1|1020922_1021066_+	DUF1381 domain-containing protein	NA	A0A2H4J2V4	uncultured_Caudovirales_phage	71.1	2.7e-10
WP_002512144.1|1021081_1021348_+	hypothetical protein	NA	NA	NA	NA	NA
WP_056935522.1|1021344_1021767_+	DUF722 domain-containing protein	NA	A0A141VTT8	Staphylococcus_phage	52.6	2.5e-35
WP_056935523.1|1022049_1022280_+	hypothetical protein	NA	NA	NA	NA	NA
WP_056935524.1|1022373_1022820_+|terminase	terminase small subunit	terminase	A0A2H4JEW5	uncultured_Caudovirales_phage	74.8	3.4e-51
WP_056935525.1|1022800_1024084_+|terminase	PBSX family phage terminase large subunit	terminase	Q8SDU9	Staphylococcus_phage	77.8	6.6e-196
WP_056935526.1|1024095_1025592_+|portal	phage portal protein	portal	A0A2H4J1M7	uncultured_Caudovirales_phage	62.3	8.8e-176
WP_056935527.1|1025597_1026569_+|head	phage head morphogenesis protein	head	A0A2H4IYR8	uncultured_Caudovirales_phage	58.4	2.1e-98
WP_056935528.1|1026916_1027519_+	DUF4355 domain-containing protein	NA	A0A1W6JNL4	Staphylococcus_phage	48.7	3.3e-17
WP_056935529.1|1027547_1028456_+|capsid	phage major capsid protein	capsid	A0A1W6JNT3	Staphylococcus_phage	65.6	2.3e-110
WP_056935530.1|1028477_1028741_+	hypothetical protein	NA	A0A1W6JNX0	Staphylococcus_phage	51.7	2.1e-16
WP_056935531.1|1028744_1029080_+|head,tail	phage head-tail connector protein	head,tail	A0A1W6JNR3	Staphylococcus_phage	61.2	2.9e-26
WP_056935532.1|1029076_1029394_+	hypothetical protein	NA	A0A1W6JNQ9	Staphylococcus_phage	49.0	2.4e-22
WP_056935533.1|1029380_1029734_+	hypothetical protein	NA	A0A2H4J1L1	uncultured_Caudovirales_phage	60.0	2.8e-32
WP_056935534.1|1029745_1030138_+	hypothetical protein	NA	A0A1W6JNL2	Staphylococcus_phage	41.6	2.9e-22
WP_056935535.1|1030193_1030748_+|tail	phage major tail protein, TP901-1 family	tail	A0A1W6JNU0	Staphylococcus_phage	56.0	1.3e-36
WP_056935536.1|1030812_1031184_+|tail	phage tail protein	tail	A0A1W6JNQ1	Staphylococcus_phage	57.6	2.3e-32
WP_056935537.1|1031228_1031585_+	hypothetical protein	NA	H9A0V9	Staphylococcus_phage	57.9	1.9e-28
WP_056935538.1|1031597_1035353_+	hypothetical protein	NA	H9A0P1	Staphylococcus_phage	38.8	3.3e-14
WP_056935539.1|1035369_1036344_+|tail	phage tail family protein	tail	A0A1W6JNQ4	Staphylococcus_phage	28.4	8.1e-29
WP_056935540.1|1036358_1037654_+	hypothetical protein	NA	A0A2H4J5W4	uncultured_Caudovirales_phage	40.0	3.1e-36
WP_056935542.1|1037900_1040102_+	hypothetical protein	NA	Q4ZCD5	Staphylococcus_virus	36.7	1.1e-76
WP_002512169.1|1040091_1040244_+	hypothetical protein	NA	NA	NA	NA	NA
WP_129651142.1|1040261_1040558_+	hypothetical protein	NA	NA	NA	NA	NA
WP_056935543.1|1040609_1040921_+	hypothetical protein	NA	A0A0D4DCQ8	Staphylococcus_phage	61.6	8.0e-23
WP_002512172.1|1040932_1042300_+	CHAP domain-containing protein	NA	Q4Z8Y9	Staphylococcus_phage	34.9	2.8e-72
1049371:1049393	attR	TTAATCCCCAAATGATGATGTAA	NA	NA	NA	NA
>prophage 5
NZ_CP013114	Staphylococcus equorum strain KS1039, complete genome	2822193	1374308	1382857	2822193		Bacillus_phage(33.33%)	9	NA	NA
WP_056935660.1|1374308_1375688_-	ATP-dependent DNA helicase RecQ	NA	M1PGQ0	Moumouvirus	34.1	1.6e-59
WP_056935661.1|1375674_1376640_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002507556.1|1376749_1376998_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	49.3	1.3e-15
WP_002507555.1|1377271_1377817_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_037539570.1|1378242_1380018_-	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	26.2	1.2e-22
WP_002507553.1|1380001_1380727_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	40.9	1.6e-45
WP_002507552.1|1380860_1381598_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_031265982.1|1381590_1382133_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	30.2	1.4e-09
WP_002507550.1|1382122_1382857_-	segregation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	23.5	1.2e-08
>prophage 6
NZ_CP013114	Staphylococcus equorum strain KS1039, complete genome	2822193	1511295	1520535	2822193	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_021339119.1|1511295_1511814_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	47.6	3.0e-30
WP_056935701.1|1511826_1514106_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.1	1.6e-67
WP_056935702.1|1514426_1516703_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	33.2	2.5e-28
WP_002507416.1|1517066_1517327_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	42.9	1.6e-05
WP_002507415.1|1517345_1518485_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	2.7e-84
WP_002507414.1|1518505_1519531_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_002507413.1|1519533_1520535_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.9	9.9e-06
>prophage 7
NZ_CP013114	Staphylococcus equorum strain KS1039, complete genome	2822193	1643768	1651247	2822193	tRNA	Staphylococcus_phage(100.0%)	6	NA	NA
WP_002507302.1|1643768_1645028_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	77.9	4.5e-40
WP_002507301.1|1645314_1645626_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	69.9	1.6e-34
WP_056935738.1|1645644_1648059_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	85.7	0.0e+00
WP_056935739.1|1648456_1649626_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	75.9	7.1e-165
WP_056935740.1|1649736_1650690_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	83.3	4.3e-67
WP_056935741.1|1650686_1651247_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	64.0	5.1e-68
>prophage 8
NZ_CP013114	Staphylococcus equorum strain KS1039, complete genome	2822193	1654399	1677886	2822193		Staphylococcus_phage(95.0%)	26	NA	NA
WP_002507293.1|1654399_1655401_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	67.3	4.7e-125
WP_056935743.1|1655514_1655973_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	75.0	1.9e-57
WP_002507291.1|1655985_1657167_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	70.7	5.5e-165
WP_002507290.1|1657177_1657810_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	63.8	1.1e-71
WP_056935744.1|1657816_1658860_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	64.4	1.3e-128
WP_056935745.1|1659438_1660908_-	SidA/IucD/PvdA family monooxygenase	NA	A0A2H4PQX2	Staphylococcus_phage	67.3	1.2e-12
WP_056935746.1|1661084_1662011_+	osmoprotectant ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002507286.1|1662601_1663453_-	autolysin	NA	A0A1W6JNR1	Staphylococcus_phage	43.3	5.7e-39
WP_002507285.1|1663616_1663841_-	hypothetical protein	NA	NA	NA	NA	NA
WP_056935747.1|1664061_1664532_+	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	47.3	1.2e-27
WP_056935748.1|1664544_1664967_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002507281.1|1664977_1665427_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	52.2	5.2e-23
WP_002507280.1|1665553_1666189_-	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_002507279.1|1666385_1667099_-	transaldolase	NA	H8ZNI7	Synechococcus_phage	37.7	5.0e-20
WP_002507278.1|1667382_1667688_+	hypothetical protein	NA	NA	NA	NA	NA
WP_056935749.1|1667755_1668121_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	62.8	1.9e-36
WP_056935750.1|1668117_1668474_+	CrcB family protein	NA	NA	NA	NA	NA
WP_056935751.1|1668667_1669504_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	68.6	8.5e-112
WP_002507274.1|1669697_1670606_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	77.0	1.3e-100
WP_002507273.1|1670701_1671898_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	86.1	7.5e-194
WP_021339026.1|1672286_1673876_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	81.1	6.3e-257
WP_056936208.1|1673929_1674700_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	69.4	3.2e-97
WP_002507270.1|1674707_1675184_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	52.9	1.8e-42
WP_002507269.1|1675246_1675483_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	79.2	1.9e-29
WP_021339023.1|1675479_1676484_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	50.2	2.9e-90
WP_056935752.1|1676497_1677886_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	63.2	3.9e-170
