assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001432245.1_ASM143224v1	NZ_CP013114	Staphylococcus equorum strain KS1039, complete genome	1	356033-356187	1	PILER-CR	no		csa3,cas3,DEDDh,DinG,WYL,RT,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas2,cas1	Orphan	AGGGTTCGCCTGAGCTAAAGCTCATGCATAAGCGCCACTAA	41	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,DEDDh,DinG,WYL,RT,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas2,cas1	NA,NA|148aa|down_2|NZ_CP013114.1_358977_359421_-,NA|140aa|down_8|NZ_CP013114.1_366341_366761_+	NA|1184aa|up_9|NZ_CP013114.1_337468_341020_+	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed	NA|1208aa|up_8|NZ_CP013114.1_341161_344785_+	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional	NA|85aa|up_7|NZ_CP013114.1_344944_345199_+	PRK13600, PRK13600, putative ribosomal protein L7Ae-like; Provisional	NA|138aa|up_6|NZ_CP013114.1_345294_345708_+	PRK05163, rpsL, 30S ribosomal protein S12; Validated	NA|157aa|up_5|NZ_CP013114.1_345778_346249_+	PRK05302, PRK05302, 30S ribosomal protein S7; Validated	NA|697aa|up_4|NZ_CP013114.1_346368_348459_+	PRK00007, PRK00007, elongation factor G; Reviewed	NA|396aa|up_3|NZ_CP013114.1_348681_349869_+	PRK00049, PRK00049, elongation factor Tu; Reviewed	NA|445aa|up_2|NZ_CP013114.1_350590_351925_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|756aa|up_1|NZ_CP013114.1_351947_354215_+	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|361aa|up_0|NZ_CP013114.1_354233_355316_+	pfam16929, Asp2, Accessory Sec system GspB-transporter	NA|393aa|down_0|NZ_CP013114.1_356199_357378_-	cd08021, M20_Acy1_YhaA-like, M20 Peptidase aminoacylase 1 subfamily, includes Bacillus subtilis YhaA and Staphylococcus aureus amidohydrolase, SACOL0085	NA|397aa|down_1|NZ_CP013114.1_357569_358760_+	PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase; Provisional	NA|148aa|down_2|NZ_CP013114.1_358977_359421_-	NA	NA|191aa|down_3|NZ_CP013114.1_362809_363382_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|169aa|down_4|NZ_CP013114.1_363407_363914_+	COG3981, COG3981, Predicted acetyltransferase [General function prediction only]	NA|235aa|down_5|NZ_CP013114.1_364102_364807_+	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]	NA|216aa|down_6|NZ_CP013114.1_364799_365447_+	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit	NA|259aa|down_7|NZ_CP013114.1_365456_366233_+	PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenase; Provisional	NA|140aa|down_8|NZ_CP013114.1_366341_366761_+	NA	NA|328aa|down_9|NZ_CP013114.1_366770_367754_+	PRK08618, PRK08618, ornithine cyclodeaminase family protein
GCF_001432245.1_ASM143224v1	NZ_CP013114	Staphylococcus equorum strain KS1039, complete genome	2	2655023-2655114	1	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL,RT,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas2,cas1	Orphan	AAAGATCAAGCAACAGATAAAGCTAAAGA	29	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL,RT,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas2,cas1	NA|63aa|up_1|NZ_CP013114.1_2649822_2650011_-,NA|241aa|down_1|NZ_CP013114.1_2656238_2656961_+	NA|275aa|up_9|NZ_CP013114.1_2642985_2643810_+	pfam02311, AraC_binding, AraC-like ligand binding domain	NA|175aa|up_8|NZ_CP013114.1_2643820_2644345_-	pfam11667, DUF3267, Putative zincin peptidase	NA|68aa|up_7|NZ_CP013114.1_2644472_2644676_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|240aa|up_6|NZ_CP013114.1_2644672_2645392_+	pfam11368, DUF3169, Protein of unknown function (DUF3169)	NA|281aa|up_5|NZ_CP013114.1_2645419_2646262_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|212aa|up_4|NZ_CP013114.1_2646261_2646897_+	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein	NA|441aa|up_3|NZ_CP013114.1_2646957_2648280_-	TIGR02919, conserved_hypothetical_protein, accessory Sec system glycosyltransferase GtfB	NA|502aa|up_2|NZ_CP013114.1_2648272_2649778_-	TIGR02918, lipopolysaccharide_biosynthesis_protein, accessory Sec system glycosylation protein GtfA	NA|63aa|up_1|NZ_CP013114.1_2649822_2650011_-	NA	NA|1501aa|up_0|NZ_CP013114.1_2650120_2654623_-	NF012181, MSCRAMM_SdrD, MSCRAMM family adhesin SdrD	NA|211aa|down_0|NZ_CP013114.1_2655587_2656220_+	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|241aa|down_1|NZ_CP013114.1_2656238_2656961_+	NA	NA|130aa|down_2|NZ_CP013114.1_2657249_2657639_-	pfam14552, Tautomerase_2, Tautomerase enzyme	NA|500aa|down_3|NZ_CP013114.1_2657766_2659266_-	cd11475, SLC5sbd_PutP, Na(+)/proline cotransporter PutP and related proteins; solute binding domain	NA|460aa|down_4|NZ_CP013114.1_2659291_2660671_-	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family	NA|255aa|down_5|NZ_CP013114.1_2661081_2661846_+	pfam10014, 2OG-Fe_Oxy_2, 2OG-Fe dioxygenase	NA|120aa|down_6|NZ_CP013114.1_2661918_2662278_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|114aa|down_7|NZ_CP013114.1_2662350_2662692_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|335aa|down_8|NZ_CP013114.1_2662881_2663886_+	cd05288, PGDH, Prostaglandin dehydrogenases	NA|473aa|down_9|NZ_CP013114.1_2664012_2665431_-	cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain
GCF_001432245.1_ASM143224v1	NZ_CP013114	Staphylococcus equorum strain KS1039, complete genome	3	2723367-2723978	2,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas2,cas1	csa3,cas3,DEDDh,DinG,WYL,RT,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas2,cas1	Type III-A	GTTCTCGTCCCCTCTTTTACGGGGTGGTTGTCGATT,GTTCTCGTCCCCTCTTTTACGGGGTGGTTGTCGATT,GTTCTCGTCCCCTCTTTTACGGGGTGGTTGTCGATT	36,36,36	0	0	NA	NA	NA:NA:NA	8,8,8	8	TypeIII-A	csa3,cas3,DEDDh,DinG,WYL,RT,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas2,cas1	NA|250aa|up_1|NZ_CP013114.1_2721753_2722503_-,NA|83aa|up_0|NZ_CP013114.1_2722581_2722830_-,NA|67aa|down_8|NZ_CP013114.1_2734193_2734394_-	NA|335aa|up_9|NZ_CP013114.1_2713409_2714414_-	cd05288, PGDH, Prostaglandin dehydrogenases	NA|222aa|up_8|NZ_CP013114.1_2714417_2715083_-	pfam13460, NAD_binding_10, NAD(P)H-binding	NA|228aa|up_7|NZ_CP013114.1_2715104_2715788_-	cd03141, GATase1_Hsp31_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein	NA|116aa|up_6|NZ_CP013114.1_2715865_2716213_+	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|325aa|up_5|NZ_CP013114.1_2716457_2717432_-	COG1637, COG1637, Predicted nuclease of the RecB family [DNA replication, recombination, and repair]	NA|345aa|up_4|NZ_CP013114.1_2717543_2718578_-	PRK09736, PRK09736, 5-methylcytosine-specific restriction enzyme subunit McrC; Provisional	NA|713aa|up_3|NZ_CP013114.1_2718574_2720713_-	PRK11331, PRK11331, 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional	NA|324aa|up_2|NZ_CP013114.1_2720744_2721716_-	pfam06207, DUF1002, Protein of unknown function (DUF1002)	NA|250aa|up_1|NZ_CP013114.1_2721753_2722503_-	NA	NA|83aa|up_0|NZ_CP013114.1_2722581_2722830_-	NA	cas6|245aa|down_0|NZ_CP013114.1_2724136_2724871_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	csm6|423aa|down_1|NZ_CP013114.1_2724867_2726136_-	TIGR02672, hypothetical_protein_SERP2456, CRISPR type III-A/MTUBE-associated protein Csm6	csm5gr7|341aa|down_2|NZ_CP013114.1_2726135_2727158_-	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm4gr5|303aa|down_3|NZ_CP013114.1_2727160_2728069_-	TIGR01903, Hypothetical_protein	csm3gr7|215aa|down_4|NZ_CP013114.1_2728079_2728724_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|142aa|down_5|NZ_CP013114.1_2728725_2729151_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas2|102aa|down_6|NZ_CP013114.1_2731442_2731748_-	TIGR01573, cas2, CRISPR-associated endonuclease Cas2	cas1|302aa|down_7|NZ_CP013114.1_2731747_2732653_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	NA|67aa|down_8|NZ_CP013114.1_2734193_2734394_-	NA	NA|358aa|down_9|NZ_CP013114.1_2734848_2735922_-	PRK12903, secA, preprotein translocase subunit SecA; Reviewed
GCF_001432245.1_ASM143224v1	NZ_CP013114	Staphylococcus equorum strain KS1039, complete genome	4	2732728-2733193	3,2,3	CRISPRCasFinder,CRT,PILER-CR	no	cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas2,cas1	csa3,cas3,DEDDh,DinG,WYL,RT,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas2,cas1	Type III-A	GTTCTCGTCCCCTATTCTTCGGGGTAGTTGTCGATC,GTTCTCGTCCCCTATTCTTCGGGGTAGTTGTCGATC,GTTCTCGTCCCCTATTCTTCGGGGTAGTTGTCGATC	36,36,36	0	0	NA	NA	NA:NA:NA	6,6,5	6	TypeIII-A	csa3,cas3,DEDDh,DinG,WYL,RT,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas2,cas1	NA|250aa|up_9|NZ_CP013114.1_2721753_2722503_-,NA|83aa|up_8|NZ_CP013114.1_2722581_2722830_-,NA|67aa|down_0|NZ_CP013114.1_2734193_2734394_-,NA|68aa|down_5|NZ_CP013114.1_2741970_2742174_-	NA|250aa|up_9|NZ_CP013114.1_2721753_2722503_-	NA	NA|83aa|up_8|NZ_CP013114.1_2722581_2722830_-	NA	cas6|245aa|up_7|NZ_CP013114.1_2724136_2724871_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	csm6|423aa|up_6|NZ_CP013114.1_2724867_2726136_-	TIGR02672, hypothetical_protein_SERP2456, CRISPR type III-A/MTUBE-associated protein Csm6	csm5gr7|341aa|up_5|NZ_CP013114.1_2726135_2727158_-	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm4gr5|303aa|up_4|NZ_CP013114.1_2727160_2728069_-	TIGR01903, Hypothetical_protein	csm3gr7|215aa|up_3|NZ_CP013114.1_2728079_2728724_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|142aa|up_2|NZ_CP013114.1_2728725_2729151_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas2|102aa|up_1|NZ_CP013114.1_2731442_2731748_-	TIGR01573, cas2, CRISPR-associated endonuclease Cas2	cas1|302aa|up_0|NZ_CP013114.1_2731747_2732653_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	NA|67aa|down_0|NZ_CP013114.1_2734193_2734394_-	NA	NA|358aa|down_1|NZ_CP013114.1_2734848_2735922_-	PRK12903, secA, preprotein translocase subunit SecA; Reviewed	NA|931aa|down_2|NZ_CP013114.1_2736177_2738970_+	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|519aa|down_3|NZ_CP013114.1_2739083_2740640_+	TIGR00497, hsdM, type I restriction system adenine methylase (hsdM)	NA|404aa|down_4|NZ_CP013114.1_2740632_2741844_+	cd17258, RMtype1_S_Sau13435ORF2165P-TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S	NA|68aa|down_5|NZ_CP013114.1_2741970_2742174_-	NA	NA|169aa|down_6|NZ_CP013114.1_2742501_2743008_-	COG4333, COG4333, Uncharacterized protein conserved in bacteria [Function unknown]	NA|104aa|down_7|NZ_CP013114.1_2743023_2743335_-	pfam06124, DUF960, Staphylococcal protein of unknown function (DUF960)	NA|117aa|down_8|NZ_CP013114.1_2743419_2743770_-	pfam06106, SAUGI, S	NA|561aa|down_9|NZ_CP013114.1_2743868_2745551_-	smart00857, Resolvase, Resolvase, N terminal domain
