assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001441245.1_ASM144124v1	NZ_CP012930	Salmonella enterica subsp. enterica serovar Heidelberg strain N13-01290 chromosome, complete genome	1	2842046-2842155	1	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	TTAAAAAAAGGTGGTACAGGGTGGGACA	28	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,cas14j	NA|198aa|up_4|NZ_CP012930.1_2835918_2836512_+,NA|276aa|up_2|NZ_CP012930.1_2838429_2839257_-,NA	NA|470aa|up_9|NZ_CP012930.1_2829268_2830678_+	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family	NA|727aa|up_8|NZ_CP012930.1_2830674_2832855_+	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family	NA|388aa|up_7|NZ_CP012930.1_2832862_2834026_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|355aa|up_6|NZ_CP012930.1_2834626_2835691_+	PRK09692, PRK09692, integrase; Provisional	NA|56aa|up_5|NZ_CP012930.1_2835704_2835872_+	PRK09692, PRK09692, integrase; Provisional	NA|198aa|up_4|NZ_CP012930.1_2835918_2836512_+	NA	NA|398aa|up_3|NZ_CP012930.1_2836901_2838095_+	pfam02810, SEC-C, SEC-C motif	NA|276aa|up_2|NZ_CP012930.1_2838429_2839257_-	NA	NA|72aa|up_1|NZ_CP012930.1_2839707_2839923_+	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|690aa|up_0|NZ_CP012930.1_2839958_2842028_+	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|428aa|down_0|NZ_CP012930.1_2842530_2843814_+	COG3950, COG3950, Predicted ATP-binding protein involved in virulence [General function prediction only]	NA|273aa|down_1|NZ_CP012930.1_2843858_2844677_+	pfam14491, DUF4435, Protein of unknown function (DUF4435)	NA|119aa|down_2|NZ_CP012930.1_2844829_2845186_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|95aa|down_3|NZ_CP012930.1_2845280_2845565_+	COG3423, Nlp, Predicted transcriptional regulator [Transcription]	NA|174aa|down_4|NZ_CP012930.1_2845677_2846199_+	COG3730, SrlA, Phosphotransferase system sorbitol-specific component IIC [Carbohydrate transport and metabolism]	NA|125aa|down_5|NZ_CP012930.1_2846195_2846570_+	COG3731, SrlB, Phosphotransferase system sorbitol-specific component IIA [Carbohydrate transport and metabolism]	NA|327aa|down_6|NZ_CP012930.1_2846566_2847547_+	COG3732, SrlE, Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism]	NA|338aa|down_7|NZ_CP012930.1_2847557_2848571_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|401aa|down_8|NZ_CP012930.1_2848865_2850068_+	pfam13020, DUF3883, Domain of unknown function (DUF3883)	NA|212aa|down_9|NZ_CP012930.1_2850141_2850777_-	TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase
GCF_001441245.1_ASM144124v1	NZ_CP012930	Salmonella enterica subsp. enterica serovar Heidelberg strain N13-01290 chromosome, complete genome	2	3033168-3034708	2,1,1,2,3	CRISPRCasFinder,CRT,PILER-CR,CRT,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E:I-E	23,24,24,24,23	24	TypeI-E	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,cas14j	NA,NA	NA|254aa|up_9|NZ_CP012930.1_3025034_3025796_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP012930.1_3025776_3026826_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP012930.1_3026822_3027302_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP012930.1_3027301_3028012_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP012930.1_3028030_3028342_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|119aa|up_4|NZ_CP012930.1_3028532_3028889_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP012930.1_3028906_3029512_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|480aa|up_2|NZ_CP012930.1_3029498_3030938_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP012930.1_3030947_3031856_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|349aa|up_0|NZ_CP012930.1_3032106_3033153_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP012930.1_3034804_3035098_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP012930.1_3035097_3036018_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP012930.1_3036014_3036665_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP012930.1_3036646_3037393_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_4|NZ_CP012930.1_3037403_3038462_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|down_5|NZ_CP012930.1_3038475_3039036_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|down_6|NZ_CP012930.1_3039032_3040589_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|down_7|NZ_CP012930.1_3040600_3043264_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|down_8|NZ_CP012930.1_3043707_3044661_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|down_9|NZ_CP012930.1_3044873_3045608_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_001441245.1_ASM144124v1	NZ_CP012930	Salmonella enterica subsp. enterica serovar Heidelberg strain N13-01290 chromosome, complete genome	3	3050966-3052102	4,3,2,3	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,GCGCTGGAACGGTTTATCCCCGCTGGCGCGGGGAACACTCGAAACGGA	29,29,29,48	0	0	NA	NA	I-E:I-E:I-E:I-E	18,18,15,15	18	TypeI-E	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,cas14j	NA,NA	cas7|353aa|up_9|NZ_CP012930.1_3037403_3038462_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|187aa|up_8|NZ_CP012930.1_3038475_3039036_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|up_7|NZ_CP012930.1_3039032_3040589_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|888aa|up_6|NZ_CP012930.1_3040600_3043264_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|318aa|up_5|NZ_CP012930.1_3043707_3044661_+	PRK15379, PRK15379, type III secretion system effector SopD	NA|245aa|up_4|NZ_CP012930.1_3044873_3045608_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NZ_CP012930.1_3045683_3047396_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_CP012930.1_3047395_3049195_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NZ_CP012930.1_3049618_3049981_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|266aa|up_0|NZ_CP012930.1_3050070_3050868_-	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|224aa|down_0|NZ_CP012930.1_3052388_3053060_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|433aa|down_1|NZ_CP012930.1_3053195_3054494_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_2|NZ_CP012930.1_3054576_3056214_-	PRK05380, pyrG, CTP synthetase; Validated	NA|267aa|down_3|NZ_CP012930.1_3056441_3057242_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|196aa|down_4|NZ_CP012930.1_3057846_3058434_+	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|900aa|down_5|NZ_CP012930.1_3058513_3061213_+	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|258aa|down_6|NZ_CP012930.1_3061225_3061999_+	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|169aa|down_7|NZ_CP012930.1_3062018_3062525_+	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|157aa|down_8|NZ_CP012930.1_3062539_3063010_+	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|179aa|down_9|NZ_CP012930.1_3063006_3063543_+	PRK15260, PRK15260, fimbrial protein SteF; Provisional
