assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001442785.1_ASM144278v1	NZ_CP011130	Lysobacter capsici strain 55 chromosome, complete genome	1	116060-116140	1	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	Orphan	CGTCATTCCCGCGAAGGCGGGAATCCAG	28	1	2	116088-116112|116088-116112	NZ_CP011130.1_4594868-4594844|NZ_CP011130.1_779891-779915	I-E	1	1	Orphan	WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	NA,NA	NA|1202aa|up_9|NZ_CP011130.1_98847_102453_+	COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]	NA|616aa|up_8|NZ_CP011130.1_102449_104297_+	TIGR01447, recD, exodeoxyribonuclease V, alpha subunit	NA|268aa|up_7|NZ_CP011130.1_104475_105279_+	pfam13588, HSDR_N_2, Type I restriction enzyme R protein N-terminus (HSDR_N)	NA|387aa|up_6|NZ_CP011130.1_105377_106538_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|94aa|up_5|NZ_CP011130.1_107105_107387_+	pfam11391, DUF2798, Protein of unknown function (DUF2798)	NA|325aa|up_4|NZ_CP011130.1_107383_108358_+	cd05233, SDR_c, classical (c) SDRs	NA|407aa|up_3|NZ_CP011130.1_108354_109575_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|1057aa|up_2|NZ_CP011130.1_109838_113009_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|484aa|up_1|NZ_CP011130.1_113001_114453_+	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family	NA|143aa|up_0|NZ_CP011130.1_115362_115791_-	TIGR02096, putative_cyclase, conserved hypothetical protein, steroid delta-isomerase-related	NA|251aa|down_0|NZ_CP011130.1_116476_117229_-	COG3300, COG3300, MHYT domain (predicted integral membrane sensor domain) [Signal transduction mechanisms]	NA|273aa|down_1|NZ_CP011130.1_117372_118191_-	smart00989, V4R, The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may bind to hydrocarbons	NA|343aa|down_2|NZ_CP011130.1_118416_119445_-	PLN02970, PLN02970, serine racemase	NA|417aa|down_3|NZ_CP011130.1_120505_121756_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|439aa|down_4|NZ_CP011130.1_121752_123069_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|329aa|down_5|NZ_CP011130.1_123086_124073_-	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|328aa|down_6|NZ_CP011130.1_124069_125053_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|225aa|down_7|NZ_CP011130.1_125075_125750_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|176aa|down_8|NZ_CP011130.1_126492_127020_+	PTZ00110, PTZ00110, helicase; Provisional	NA|630aa|down_9|NZ_CP011130.1_127720_129610_+	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG
GCF_001442785.1_ASM144278v1	NZ_CP011130	Lysobacter capsici strain 55 chromosome, complete genome	2	162025-162105	2	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	Orphan	CGTCATTCCCGCGAAGGCGGGAATCCAG	28	1	2	162053-162077|162053-162077	NZ_CP011130.1_555857-555881|NZ_CP011130.1_266063-266087	I-E	1	1	Orphan	WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	NA|283aa|up_8|NZ_CP011130.1_150538_151387_+,NA|190aa|up_7|NZ_CP011130.1_151383_151953_+,NA|65aa|down_4|NZ_CP011130.1_166216_166411_-,NA|401aa|down_9|NZ_CP011130.1_172723_173926_-	NA|210aa|up_9|NZ_CP011130.1_149902_150532_+	cd02900, Macro_Appr_pase, macrodomain, Appr-1"-pase family	NA|283aa|up_8|NZ_CP011130.1_150538_151387_+	NA	NA|190aa|up_7|NZ_CP011130.1_151383_151953_+	NA	NA|485aa|up_6|NZ_CP011130.1_152114_153569_+	cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site	NA|382aa|up_5|NZ_CP011130.1_154425_155571_-	COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]	NA|337aa|up_4|NZ_CP011130.1_155584_156595_-	COG2222, AgaS, Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]	NA|251aa|up_3|NZ_CP011130.1_156630_157383_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|506aa|up_2|NZ_CP011130.1_157531_159049_+	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|252aa|up_1|NZ_CP011130.1_159032_159788_+	cd01400, 6PGL, 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate	NA|611aa|up_0|NZ_CP011130.1_160075_161908_+	PRK09054, PRK09054, phosphogluconate dehydratase; Validated	NA|227aa|down_0|NZ_CP011130.1_162263_162944_+	COG0546, Gph, Predicted phosphatases [General function prediction only]	NA|213aa|down_1|NZ_CP011130.1_163323_163962_+	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional	NA|349aa|down_2|NZ_CP011130.1_164409_165456_-	cd01545, PBP1_SalR, ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators	NA|152aa|down_3|NZ_CP011130.1_165525_165981_-	PRK10254, PRK10254, proofreading thioesterase EntH	NA|65aa|down_4|NZ_CP011130.1_166216_166411_-	NA	NA|658aa|down_5|NZ_CP011130.1_167698_169672_-	cd09111, PLDc_ymdC_like_1, Putative catalytic domain, repeat 1, of Escherichia coli uncharacterized protein ymdC and similar proteins	NA|249aa|down_6|NZ_CP011130.1_169684_170431_-	COG2353, COG2353, Uncharacterized conserved protein [Function unknown]	NA|159aa|down_7|NZ_CP011130.1_170421_170898_-	COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms]	NA|210aa|down_8|NZ_CP011130.1_171009_171639_-	cd02042, ParAB_family, partition proteins ParAB family	NA|401aa|down_9|NZ_CP011130.1_172723_173926_-	NA
GCF_001442785.1_ASM144278v1	NZ_CP011130	Lysobacter capsici strain 55 chromosome, complete genome	3	178797-178877	3	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	Orphan	CTGGATTCCCGCTTTCGCGGGAATGACG	28	1	4	178825-178849|178825-178849|178825-178849|178825-178849	NZ_CP011130.1_116059-116035|NZ_CP011130.1_266008-265984|NZ_CP011130.1_2657398-2657374|NZ_CP011130.1_4774301-4774325	I-E	1	1	Orphan	WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	NA|65aa|up_9|NZ_CP011130.1_166216_166411_-,NA|401aa|up_4|NZ_CP011130.1_172723_173926_-,NA|296aa|up_0|NZ_CP011130.1_177335_178223_-,NA|213aa|down_7|NZ_CP011130.1_191597_192236_-	NA|65aa|up_9|NZ_CP011130.1_166216_166411_-	NA	NA|658aa|up_8|NZ_CP011130.1_167698_169672_-	cd09111, PLDc_ymdC_like_1, Putative catalytic domain, repeat 1, of Escherichia coli uncharacterized protein ymdC and similar proteins	NA|249aa|up_7|NZ_CP011130.1_169684_170431_-	COG2353, COG2353, Uncharacterized conserved protein [Function unknown]	NA|159aa|up_6|NZ_CP011130.1_170421_170898_-	COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms]	NA|210aa|up_5|NZ_CP011130.1_171009_171639_-	cd02042, ParAB_family, partition proteins ParAB family	NA|401aa|up_4|NZ_CP011130.1_172723_173926_-	NA	NA|303aa|up_3|NZ_CP011130.1_174120_175029_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|496aa|up_2|NZ_CP011130.1_175345_176833_+	CHL00195, ycf46, Ycf46; Provisional	NA|132aa|up_1|NZ_CP011130.1_176867_177263_-	cd06661, GGCT_like, GGCT-like domains, also called AIG2-like family	NA|296aa|up_0|NZ_CP011130.1_177335_178223_-	NA	NA|583aa|down_0|NZ_CP011130.1_179039_180788_-	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]	NA|327aa|down_1|NZ_CP011130.1_180993_181974_+	cd00519, Lipase_3, Lipase (class 3)	NA|244aa|down_2|NZ_CP011130.1_182040_182772_+	sd00045, ANK, ankyrin repeats	NA|505aa|down_3|NZ_CP011130.1_183797_185312_+	cd00519, Lipase_3, Lipase (class 3)	NA|221aa|down_4|NZ_CP011130.1_186026_186689_+	sd00045, ANK, ankyrin repeats	NA|986aa|down_5|NZ_CP011130.1_187152_190110_-	PRK15347, PRK15347, two component system sensor kinase	NA|399aa|down_6|NZ_CP011130.1_190116_191313_-	cd01948, EAL, EAL domain	NA|213aa|down_7|NZ_CP011130.1_191597_192236_-	NA	NA|806aa|down_8|NZ_CP011130.1_192487_194905_-	cd06563, GH20_chitobiase-like, The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin	NA|891aa|down_9|NZ_CP011130.1_195186_197859_-	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor
GCF_001442785.1_ASM144278v1	NZ_CP011130	Lysobacter capsici strain 55 chromosome, complete genome	4	513649-513949	1	CRT	no		WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	Orphan	CGANGNNGATGCTGCCGTTGACNGT	25	0	0	NA	NA	NA	5	5	Orphan	WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	NA|83aa|up_6|NZ_CP011130.1_505962_506211_+,NA|214aa|down_3|NZ_CP011130.1_519296_519938_-	NA|494aa|up_9|NZ_CP011130.1_494456_495938_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|405aa|up_8|NZ_CP011130.1_496142_497357_+	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|548aa|up_7|NZ_CP011130.1_504200_505844_+	PLN02793, PLN02793, Probable polygalacturonase	NA|83aa|up_6|NZ_CP011130.1_505962_506211_+	NA	NA|439aa|up_5|NZ_CP011130.1_506766_508083_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|229aa|up_4|NZ_CP011130.1_508079_508766_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|372aa|up_3|NZ_CP011130.1_508772_509888_-	cd03141, GATase1_Hsp31_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein	NA|245aa|up_2|NZ_CP011130.1_509979_510714_-	pfam10014, 2OG-Fe_Oxy_2, 2OG-Fe dioxygenase	NA|152aa|up_1|NZ_CP011130.1_510809_511265_-	COG3686, COG3686, Predicted membrane protein [Function unknown]	NA|582aa|up_0|NZ_CP011130.1_511408_513154_-	cd05660, M28_like_PA, M28 Zn-peptidase containing a protease-associated (PA) domain insert	NA|512aa|down_0|NZ_CP011130.1_514273_515809_+	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|423aa|down_1|NZ_CP011130.1_515808_517077_+	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	NA|510aa|down_2|NZ_CP011130.1_517462_518992_+	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|214aa|down_3|NZ_CP011130.1_519296_519938_-	NA	NA|106aa|down_4|NZ_CP011130.1_519979_520297_-	COG4517, COG4517, Uncharacterized protein conserved in bacteria [Function unknown]	NA|232aa|down_5|NZ_CP011130.1_520435_521131_-	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]	NA|456aa|down_6|NZ_CP011130.1_521396_522764_+	pfam03349, Toluene_X, Outer membrane protein transport protein (OMPP1/FadL/TodX)	NA|358aa|down_7|NZ_CP011130.1_522852_523926_-	pfam13847, Methyltransf_31, Methyltransferase domain	NA|486aa|down_8|NZ_CP011130.1_524012_525470_-	cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like	NA|457aa|down_9|NZ_CP011130.1_525528_526899_-	cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like
GCF_001442785.1_ASM144278v1	NZ_CP011130	Lysobacter capsici strain 55 chromosome, complete genome	5	961915-961989	4	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	Orphan	GAAAGAAACGCCGTACGCGCGCA	23	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	NA|260aa|up_9|NZ_CP011130.1_950888_951668_-,NA|162aa|up_4|NZ_CP011130.1_957328_957814_+,NA|247aa|down_1|NZ_CP011130.1_962783_963524_-,NA|247aa|down_6|NZ_CP011130.1_967858_968599_+	NA|260aa|up_9|NZ_CP011130.1_950888_951668_-	NA	NA|529aa|up_8|NZ_CP011130.1_951726_953313_-	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|215aa|up_7|NZ_CP011130.1_953584_954229_+	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|587aa|up_6|NZ_CP011130.1_954228_955989_+	pfam12147, Methyltransf_20, Putative methyltransferase	NA|449aa|up_5|NZ_CP011130.1_955985_957332_+	cd14527, DSP_bac, unknown subfamily of bacterial and plant dual specificity protein phosphatases	NA|162aa|up_4|NZ_CP011130.1_957328_957814_+	NA	NA|502aa|up_3|NZ_CP011130.1_957825_959331_+	TIGR04222, integral_membrane_protein, TIGR04222 domain	NA|233aa|up_2|NZ_CP011130.1_959344_960043_+	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|227aa|up_1|NZ_CP011130.1_960039_960720_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|320aa|up_0|NZ_CP011130.1_960716_961676_+	COG4589, COG4589, Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]	NA|146aa|down_0|NZ_CP011130.1_962161_962599_+	sd00006, TPR, Tetratricopeptide repeat	NA|247aa|down_1|NZ_CP011130.1_962783_963524_-	NA	NA|91aa|down_2|NZ_CP011130.1_963703_963976_-	PRK00430, fis, DNA-binding transcriptional regulator Fis	NA|363aa|down_3|NZ_CP011130.1_964097_965186_-	pfam11906, DUF3426, Protein of unknown function (DUF3426)	NA|307aa|down_4|NZ_CP011130.1_965213_966134_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|359aa|down_5|NZ_CP011130.1_966224_967301_+	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau	NA|247aa|down_6|NZ_CP011130.1_967858_968599_+	NA	NA|456aa|down_7|NZ_CP011130.1_969456_970824_-	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated	NA|146aa|down_8|NZ_CP011130.1_970816_971254_-	cd16377, 23S_rRNA_IVP_like, 23S rRNA-intervening sequence protein and similar proteins	NA|162aa|down_9|NZ_CP011130.1_971282_971768_-	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein
GCF_001442785.1_ASM144278v1	NZ_CP011130	Lysobacter capsici strain 55 chromosome, complete genome	6	1149460-1149564	5	CRISPRCasFinder	no	cas3	WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	Unclear	CTCTCGATATGCGGCGCCCCGCGTA	25	0	0	NA	NA	NA	1	1	Unclear	WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	NA,NA|130aa|down_2|NZ_CP011130.1_1152281_1152671_-,NA|284aa|down_3|NZ_CP011130.1_1152835_1153687_-,NA|243aa|down_4|NZ_CP011130.1_1153922_1154651_-,NA|218aa|down_5|NZ_CP011130.1_1155361_1156015_-	NA|727aa|up_9|NZ_CP011130.1_1135339_1137520_+	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|128aa|up_8|NZ_CP011130.1_1137653_1138037_+	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase	NA|354aa|up_7|NZ_CP011130.1_1138255_1139317_-	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term	NA|411aa|up_6|NZ_CP011130.1_1139498_1140731_+	TIGR03805, beta_helix_1, parallel beta-helix repeat-containing protein	NA|392aa|up_5|NZ_CP011130.1_1140779_1141955_+	TIGR03806, chp_HNE_0200, conserved hypothetical protein, HNE_0200 family	NA|814aa|up_4|NZ_CP011130.1_1142141_1144583_+	COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism]	cas3|707aa|up_3|NZ_CP011130.1_1144690_1146811_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|213aa|up_2|NZ_CP011130.1_1146957_1147596_+	NF033203, entero_EhxA, enterohemolysin EhxA	NA|194aa|up_1|NZ_CP011130.1_1147885_1148467_+	pfam13761, DUF4166, Domain of unknown function (DUF4166)	NA|314aa|up_0|NZ_CP011130.1_1148463_1149405_+	cd02649, nuc_hydro_CeIAG, nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans	NA|81aa|down_0|NZ_CP011130.1_1149909_1150152_+	PRK01678, rpmE2, type B 50S ribosomal protein L31	NA|436aa|down_1|NZ_CP011130.1_1150683_1151991_+	PRK05614, gltA, citrate synthase	NA|130aa|down_2|NZ_CP011130.1_1152281_1152671_-	NA	NA|284aa|down_3|NZ_CP011130.1_1152835_1153687_-	NA	NA|243aa|down_4|NZ_CP011130.1_1153922_1154651_-	NA	NA|218aa|down_5|NZ_CP011130.1_1155361_1156015_-	NA	NA|858aa|down_6|NZ_CP011130.1_1156264_1158838_-	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]	NA|353aa|down_7|NZ_CP011130.1_1159345_1160404_+	pfam11104, PilM_2, Type IV pilus assembly protein PilM;	NA|272aa|down_8|NZ_CP011130.1_1160403_1161219_+	COG3166, PilN, Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion]	NA|241aa|down_9|NZ_CP011130.1_1161215_1161938_+	COG3167, PilO, Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
GCF_001442785.1_ASM144278v1	NZ_CP011130	Lysobacter capsici strain 55 chromosome, complete genome	7	1390471-1390572	6	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	Orphan	CCCTTCTCCCGCAAGCGGGAGAAGG	25	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	NA|90aa|up_8|NZ_CP011130.1_1366076_1366346_-,NA|135aa|up_4|NZ_CP011130.1_1383563_1383968_-,NA|272aa|down_7|NZ_CP011130.1_1405214_1406030_-	NA|200aa|up_9|NZ_CP011130.1_1365306_1365906_-	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|90aa|up_8|NZ_CP011130.1_1366076_1366346_-	NA	NA|387aa|up_7|NZ_CP011130.1_1366869_1368030_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|4890aa|up_6|NZ_CP011130.1_1368165_1382835_+	COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane]	NA|154aa|up_5|NZ_CP011130.1_1382836_1383298_+	pfam18228, CdiI_N, CdiI N-terminal domain	NA|135aa|up_4|NZ_CP011130.1_1383563_1383968_-	NA	NA|159aa|up_3|NZ_CP011130.1_1384148_1384625_-	pfam14539, DUF4442, Domain of unknown function (DUF4442)	NA|830aa|up_2|NZ_CP011130.1_1385047_1387537_-	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|228aa|up_1|NZ_CP011130.1_1387932_1388616_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|589aa|up_0|NZ_CP011130.1_1388695_1390462_+	PRK04210, PRK04210, phosphoenolpyruvate carboxykinase (GTP)	NA|196aa|down_0|NZ_CP011130.1_1390696_1391284_+	PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional	NA|252aa|down_1|NZ_CP011130.1_1391325_1392081_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|318aa|down_2|NZ_CP011130.1_1392098_1393052_+	pfam13349, DUF4097, Putative adhesin	NA|449aa|down_3|NZ_CP011130.1_1393176_1394523_+	pfam05118, Asp_Arg_Hydrox, Aspartyl/Asparaginyl beta-hydroxylase	NA|968aa|down_4|NZ_CP011130.1_1394685_1397589_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|1017aa|down_5|NZ_CP011130.1_1397828_1400879_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|995aa|down_6|NZ_CP011130.1_1401206_1404191_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|272aa|down_7|NZ_CP011130.1_1405214_1406030_-	NA	NA|315aa|down_8|NZ_CP011130.1_1406207_1407152_-	cd00498, Hsp33, Heat shock protein 33 (Hsp33):  Cytosolic protein that acts as a molecular chaperone under oxidative conditions	NA|254aa|down_9|NZ_CP011130.1_1407354_1408116_+	PRK00056, mtgA, monofunctional biosynthetic peptidoglycan transglycosylase; Provisional
GCF_001442785.1_ASM144278v1	NZ_CP011130	Lysobacter capsici strain 55 chromosome, complete genome	8	1954797-1954898	7	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	Orphan	CTCTCACTCACTTCTCACTCCTCTC	25	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	NA|159aa|up_8|NZ_CP011130.1_1940747_1941224_-,NA|139aa|up_5|NZ_CP011130.1_1943992_1944409_+,NA|620aa|up_4|NZ_CP011130.1_1944412_1946272_+,NA|923aa|up_3|NZ_CP011130.1_1946264_1949033_+,NA|147aa|up_1|NZ_CP011130.1_1951781_1952222_+,NA|139aa|down_2|NZ_CP011130.1_1958976_1959393_+,NA|95aa|down_6|NZ_CP011130.1_1963175_1963460_-	NA|309aa|up_9|NZ_CP011130.1_1939824_1940751_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|159aa|up_8|NZ_CP011130.1_1940747_1941224_-	NA	NA|456aa|up_7|NZ_CP011130.1_1941223_1942591_-	COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]	NA|381aa|up_6|NZ_CP011130.1_1942853_1943996_+	PRK13531, PRK13531, regulatory ATPase RavA; Provisional	NA|139aa|up_5|NZ_CP011130.1_1943992_1944409_+	NA	NA|620aa|up_4|NZ_CP011130.1_1944412_1946272_+	NA	NA|923aa|up_3|NZ_CP011130.1_1946264_1949033_+	NA	NA|671aa|up_2|NZ_CP011130.1_1949268_1951281_-	cd08662, M13, Peptidase family M13 includes neprilysin and endothelin-converting enzyme I	NA|147aa|up_1|NZ_CP011130.1_1951781_1952222_+	NA	NA|713aa|up_0|NZ_CP011130.1_1952449_1954588_-	COG3590, PepO, Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]	NA|695aa|down_0|NZ_CP011130.1_1954912_1956997_-	COG3590, PepO, Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]	NA|458aa|down_1|NZ_CP011130.1_1957436_1958810_+	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]	NA|139aa|down_2|NZ_CP011130.1_1958976_1959393_+	NA	NA|515aa|down_3|NZ_CP011130.1_1959456_1961001_-	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter	NA|172aa|down_4|NZ_CP011130.1_1961364_1961880_-	pfam11745, DUF3304, Protein of unknown function (DUF3304)	NA|400aa|down_5|NZ_CP011130.1_1961961_1963161_-	COG4292, COG4292, Predicted membrane protein [Function unknown]	NA|95aa|down_6|NZ_CP011130.1_1963175_1963460_-	NA	NA|258aa|down_7|NZ_CP011130.1_1963633_1964407_-	PRK12744, PRK12744, SDR family oxidoreductase	NA|290aa|down_8|NZ_CP011130.1_1964567_1965437_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|299aa|down_9|NZ_CP011130.1_1965769_1966666_+	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component
GCF_001442785.1_ASM144278v1	NZ_CP011130	Lysobacter capsici strain 55 chromosome, complete genome	9	3315990-3316090	8	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	Orphan	GCAGAGCCCGCCTTCGCGGGAAT	23	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	NA,NA	NA|306aa|up_9|NZ_CP011130.1_3301368_3302286_-	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase	NA|648aa|up_8|NZ_CP011130.1_3302278_3304222_-	TIGR04377, 3D-35/4-trihydroxycyclohexane-12-dione_hydrolase, 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase	NA|652aa|up_7|NZ_CP011130.1_3304218_3306174_-	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090)	NA|264aa|up_6|NZ_CP011130.1_3306214_3307006_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|374aa|up_5|NZ_CP011130.1_3307016_3308138_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|363aa|up_4|NZ_CP011130.1_3308283_3309372_-	cd06312, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of uncharacterized ABC-type transport systems	NA|289aa|up_3|NZ_CP011130.1_3309568_3310435_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|331aa|up_2|NZ_CP011130.1_3310427_3311420_+	TIGR04380, hypothetical_protein_HOLDEFILI_04020, inositol 2-dehydrogenase	NA|341aa|up_1|NZ_CP011130.1_3311486_3312509_+	TIGR04380, hypothetical_protein_HOLDEFILI_04020, inositol 2-dehydrogenase	NA|917aa|up_0|NZ_CP011130.1_3312635_3315386_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|353aa|down_0|NZ_CP011130.1_3316200_3317259_-	PRK05720, mtnA, methylthioribose-1-phosphate isomerase; Reviewed	NA|256aa|down_1|NZ_CP011130.1_3317406_3318174_-	pfam11218, DUF3011, Protein of unknown function (DUF3011)	NA|243aa|down_2|NZ_CP011130.1_3318363_3319092_-	pfam11218, DUF3011, Protein of unknown function (DUF3011)	NA|333aa|down_3|NZ_CP011130.1_3319196_3320195_-	TIGR00462, genX, EF-P lysine aminoacylase GenX	NA|788aa|down_4|NZ_CP011130.1_3320191_3322555_-	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|257aa|down_5|NZ_CP011130.1_3323146_3323917_-	PRK04570, PRK04570, cell division protein ZipA; Provisional	NA|1168aa|down_6|NZ_CP011130.1_3324172_3327676_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|131aa|down_7|NZ_CP011130.1_3328002_3328395_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|512aa|down_8|NZ_CP011130.1_3328406_3329942_+	cd07341, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|521aa|down_9|NZ_CP011130.1_3330064_3331627_+	pfam00144, Beta-lactamase, Beta-lactamase
GCF_001442785.1_ASM144278v1	NZ_CP011130	Lysobacter capsici strain 55 chromosome, complete genome	10	3461786-3461917	9	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	Orphan	CGACCGGATCGACCAGCGGCGCGG	24	0	0	NA	NA	NA	2	2	Orphan	WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	NA|226aa|up_8|NZ_CP011130.1_3449817_3450495_+,NA|356aa|down_6|NZ_CP011130.1_3470441_3471509_+,NA|55aa|down_9|NZ_CP011130.1_3475093_3475258_-	NA|388aa|up_9|NZ_CP011130.1_3448251_3449415_+	COG3591, COG3591, V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]	NA|226aa|up_8|NZ_CP011130.1_3449817_3450495_+	NA	NA|332aa|up_7|NZ_CP011130.1_3450582_3451578_-	COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only]	NA|620aa|up_6|NZ_CP011130.1_3451798_3453658_+	COG3083, COG3083, Predicted hydrolase of alkaline phosphatase superfamily [General function prediction only]	NA|447aa|up_5|NZ_CP011130.1_3454402_3455743_-	PRK10887, glmM, phosphoglucosamine mutase; Provisional	NA|296aa|up_4|NZ_CP011130.1_3455910_3456798_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|271aa|up_3|NZ_CP011130.1_3456931_3457744_-	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional	NA|409aa|up_2|NZ_CP011130.1_3457940_3459167_-	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|221aa|up_1|NZ_CP011130.1_3459836_3460499_-	PRK01222, PRK01222, phosphoribosylanthranilate isomerase	NA|281aa|up_0|NZ_CP011130.1_3460495_3461338_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|341aa|down_0|NZ_CP011130.1_3463726_3464749_-	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional	NA|331aa|down_1|NZ_CP011130.1_3464885_3465878_-	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)	NA|372aa|down_2|NZ_CP011130.1_3465870_3466986_-	PRK05382, PRK05382, chorismate synthase; Validated	NA|310aa|down_3|NZ_CP011130.1_3467653_3468583_-	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA|215aa|down_4|NZ_CP011130.1_3468920_3469565_+	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold	NA|283aa|down_5|NZ_CP011130.1_3469561_3470410_+	PRK00044, psd, phosphatidylserine decarboxylase; Reviewed	NA|356aa|down_6|NZ_CP011130.1_3470441_3471509_+	NA	NA|692aa|down_7|NZ_CP011130.1_3472270_3474346_+	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|228aa|down_8|NZ_CP011130.1_3474413_3475097_-	pfam07947, YhhN, YhhN family	NA|55aa|down_9|NZ_CP011130.1_3475093_3475258_-	NA
GCF_001442785.1_ASM144278v1	NZ_CP011130	Lysobacter capsici strain 55 chromosome, complete genome	11	3956132-3956288	10	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	Orphan	CACGGCGCACATCCATGTGCGCCGCCCTTCGGGTGTGCTTTTGTTCTCGCGAGT	54	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	NA|183aa|up_7|NZ_CP011130.1_3946240_3946789_+,NA|104aa|up_6|NZ_CP011130.1_3946841_3947153_+,NA|205aa|up_4|NZ_CP011130.1_3949315_3949930_+,NA|67aa|down_6|NZ_CP011130.1_3963681_3963882_+,NA|75aa|down_7|NZ_CP011130.1_3964146_3964371_+	NA|695aa|up_9|NZ_CP011130.1_3942042_3944127_+	PRK05443, PRK05443, polyphosphate kinase; Provisional	NA|510aa|up_8|NZ_CP011130.1_3944137_3945667_+	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]	NA|183aa|up_7|NZ_CP011130.1_3946240_3946789_+	NA	NA|104aa|up_6|NZ_CP011130.1_3946841_3947153_+	NA	NA|573aa|up_5|NZ_CP011130.1_3947279_3948998_-	PRK08315, PRK08315, AMP-binding domain protein; Validated	NA|205aa|up_4|NZ_CP011130.1_3949315_3949930_+	NA	NA|640aa|up_3|NZ_CP011130.1_3950042_3951962_-	PRK05454, PRK05454, glucans biosynthesis glucosyltransferase MdoH	NA|507aa|up_2|NZ_CP011130.1_3951958_3953479_-	pfam04349, MdoG, Periplasmic glucan biosynthesis protein, MdoG	NA|396aa|up_1|NZ_CP011130.1_3953713_3954901_+	cd03814, GT4-like, glycosyltransferase family 4 proteins	NA|184aa|up_0|NZ_CP011130.1_3954897_3955449_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|295aa|down_0|NZ_CP011130.1_3956431_3957316_-	cd07574, nitrilase_Rim1_like, Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases)	NA|202aa|down_1|NZ_CP011130.1_3957315_3957921_-	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate	NA|484aa|down_2|NZ_CP011130.1_3958134_3959586_-	PRK11715, PRK11715, cell envelope integrity protein CreD	NA|481aa|down_3|NZ_CP011130.1_3960028_3961471_-	PRK11100, PRK11100, sensory histidine kinase CreC; Provisional	NA|224aa|down_4|NZ_CP011130.1_3961481_3962153_-	PRK11083, PRK11083, DNA-binding response regulator CreB; Provisional	NA|287aa|down_5|NZ_CP011130.1_3962342_3963203_+	COG2961, ComJ, Protein involved in catabolism of external DNA [General function prediction only]	NA|67aa|down_6|NZ_CP011130.1_3963681_3963882_+	NA	NA|75aa|down_7|NZ_CP011130.1_3964146_3964371_+	NA	NA|164aa|down_8|NZ_CP011130.1_3964432_3964924_-	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|338aa|down_9|NZ_CP011130.1_3964908_3965922_-	pfam09234, DUF1963, Domain of unknown function (DUF1963)
GCF_001442785.1_ASM144278v1	NZ_CP011130	Lysobacter capsici strain 55 chromosome, complete genome	12	3983381-3983473	11	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	Orphan	CGAAAGTCCGGGAATGCAGTGAC	23	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	NA|138aa|up_8|NZ_CP011130.1_3974848_3975262_+,NA|160aa|up_6|NZ_CP011130.1_3976462_3976942_+,NA|82aa|up_4|NZ_CP011130.1_3978080_3978326_-,NA|284aa|down_3|NZ_CP011130.1_3985870_3986722_+,NA|211aa|down_4|NZ_CP011130.1_3986935_3987568_-	NA|173aa|up_9|NZ_CP011130.1_3974228_3974747_+	cd07067, HP_PGM_like, Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction	NA|138aa|up_8|NZ_CP011130.1_3974848_3975262_+	NA	NA|287aa|up_7|NZ_CP011130.1_3975494_3976355_+	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|160aa|up_6|NZ_CP011130.1_3976462_3976942_+	NA	NA|237aa|up_5|NZ_CP011130.1_3977163_3977874_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|82aa|up_4|NZ_CP011130.1_3978080_3978326_-	NA	NA|287aa|up_3|NZ_CP011130.1_3978583_3979444_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|196aa|up_2|NZ_CP011130.1_3979756_3980344_-	COG3963, COG3963, Phospholipid N-methyltransferase [Lipid metabolism]	NA|800aa|up_1|NZ_CP011130.1_3980402_3982802_-	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA|176aa|up_0|NZ_CP011130.1_3982815_3983343_-	COG2945, COG2945, Predicted hydrolase of the alpha/beta superfamily [General function prediction only]	NA|171aa|down_0|NZ_CP011130.1_3983755_3984268_-	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown]	NA|188aa|down_1|NZ_CP011130.1_3984308_3984872_+	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]	NA|295aa|down_2|NZ_CP011130.1_3984984_3985869_+	COG1946, TesB, Acyl-CoA thioesterase [Lipid metabolism]	NA|284aa|down_3|NZ_CP011130.1_3985870_3986722_+	NA	NA|211aa|down_4|NZ_CP011130.1_3986935_3987568_-	NA	NA|432aa|down_5|NZ_CP011130.1_3988017_3989313_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|765aa|down_6|NZ_CP011130.1_3989452_3991747_-	pfam01345, DUF11, Domain of unknown function DUF11	NA|213aa|down_7|NZ_CP011130.1_3992246_3992885_-	pfam13499, EF-hand_7, EF-hand domain pair	NA|248aa|down_8|NZ_CP011130.1_3993077_3993821_+	PRK01305, PRK01305, arginyl-tRNA-protein transferase; Provisional	NA|145aa|down_9|NZ_CP011130.1_3993945_3994380_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit
GCF_001442785.1_ASM144278v1	NZ_CP011130	Lysobacter capsici strain 55 chromosome, complete genome	13	4421644-4421742	12	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	Orphan	CGGTCGCGGCTCACGCCGCTCCTACA	26	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	NA,NA|124aa|down_6|NZ_CP011130.1_4427031_4427403_+,NA|366aa|down_8|NZ_CP011130.1_4428552_4429650_-	NA|397aa|up_9|NZ_CP011130.1_4409200_4410391_-	PRK00049, PRK00049, elongation factor Tu; Reviewed	NA|364aa|up_8|NZ_CP011130.1_4410980_4412072_-	PRK09601, PRK09601, redox-regulated ATPase YchF	NA|194aa|up_7|NZ_CP011130.1_4412149_4412731_-	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	NA|220aa|up_6|NZ_CP011130.1_4412790_4413450_-	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|320aa|up_5|NZ_CP011130.1_4413626_4414586_-	PRK04923, PRK04923, ribose-phosphate diphosphokinase	NA|319aa|up_4|NZ_CP011130.1_4414760_4415717_-	PRK00343, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	NA|337aa|up_3|NZ_CP011130.1_4415732_4416743_-	PRK00022, lolB, lipoprotein localization protein LolB	NA|576aa|up_2|NZ_CP011130.1_4416772_4418500_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|432aa|up_1|NZ_CP011130.1_4418778_4420074_+	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed	NA|361aa|up_0|NZ_CP011130.1_4420143_4421226_+	PRK00591, prfA, peptide chain release factor 1; Validated	NA|157aa|down_0|NZ_CP011130.1_4421887_4422358_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|575aa|down_1|NZ_CP011130.1_4422380_4424105_+	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]	NA|173aa|down_2|NZ_CP011130.1_4424180_4424699_+	TIGR02667, Molybdenum_cofactor_biosynthesis_protein_B	NA|127aa|down_3|NZ_CP011130.1_4424704_4425085_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|257aa|down_4|NZ_CP011130.1_4425081_4425852_+	TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family	NA|248aa|down_5|NZ_CP011130.1_4426102_4426846_-	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|124aa|down_6|NZ_CP011130.1_4427031_4427403_+	NA	NA|309aa|down_7|NZ_CP011130.1_4427429_4428356_+	pfam09916, DUF2145, Uncharacterized protein conserved in bacteria (DUF2145)	NA|366aa|down_8|NZ_CP011130.1_4428552_4429650_-	NA	NA|90aa|down_9|NZ_CP011130.1_4429812_4430082_-	PRK14426, PRK14426, acylphosphatase; Provisional
GCF_001442785.1_ASM144278v1	NZ_CP011130	Lysobacter capsici strain 55 chromosome, complete genome	14	4525109-4525227	13	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	Orphan	CCTGTAGGAGCGGCGCAAGCCGCGACCGCG	30	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	NA,NA|102aa|down_1|NZ_CP011130.1_4526749_4527055_-,NA|122aa|down_2|NZ_CP011130.1_4527056_4527422_-,NA|198aa|down_5|NZ_CP011130.1_4530491_4531085_+,NA|145aa|down_8|NZ_CP011130.1_4532893_4533328_+	NA|319aa|up_9|NZ_CP011130.1_4513342_4514299_+	PRK11151, PRK11151, DNA-binding transcriptional regulator OxyR; Provisional	NA|191aa|up_8|NZ_CP011130.1_4514582_4515155_+	cd03140, GATase1_PfpI_3, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus	NA|217aa|up_7|NZ_CP011130.1_4515382_4516033_-	PRK00058, PRK00058, peptide-methionine (S)-S-oxide reductase MsrA	NA|550aa|up_6|NZ_CP011130.1_4516272_4517922_+	pfam12222, PNGaseA, Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A	NA|312aa|up_5|NZ_CP011130.1_4518717_4519653_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|94aa|up_4|NZ_CP011130.1_4519902_4520184_-	pfam09413, DUF2007, Putative prokaryotic signal transducing protein	NA|583aa|up_3|NZ_CP011130.1_4520399_4522148_+	PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional	NA|185aa|up_2|NZ_CP011130.1_4522165_4522720_+	cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases	NA|357aa|up_1|NZ_CP011130.1_4522857_4523928_+	PRK11760, PRK11760, putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional	NA|249aa|up_0|NZ_CP011130.1_4524128_4524875_+	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|448aa|down_0|NZ_CP011130.1_4525387_4526731_+	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|102aa|down_1|NZ_CP011130.1_4526749_4527055_-	NA	NA|122aa|down_2|NZ_CP011130.1_4527056_4527422_-	NA	NA|400aa|down_3|NZ_CP011130.1_4527584_4528784_-	PRK08773, PRK08773, UbiH/UbiF family hydroxylase	NA|418aa|down_4|NZ_CP011130.1_4528780_4530034_-	PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated	NA|198aa|down_5|NZ_CP011130.1_4530491_4531085_+	NA	NA|185aa|down_6|NZ_CP011130.1_4531101_4531656_+	pfam01923, Cob_adeno_trans, Cobalamin adenosyltransferase	NA|304aa|down_7|NZ_CP011130.1_4531658_4532570_+	cd11599, HDAC_classII_2, Histone deacetylases and histone-like deacetylases, classII	NA|145aa|down_8|NZ_CP011130.1_4532893_4533328_+	NA	NA|166aa|down_9|NZ_CP011130.1_4533613_4534111_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB
GCF_001442785.1_ASM144278v1	NZ_CP011130	Lysobacter capsici strain 55 chromosome, complete genome	15	4631614-4631780	14	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	Orphan	GACGCGGTCGCGGCTCGCGCCGCTCCTACAGGGGGCGGCCGCGGCTTCGTTTCGC	55	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	NA|478aa|up_8|NZ_CP011130.1_4603643_4605077_-,NA|92aa|up_7|NZ_CP011130.1_4605384_4605660_-,NA|177aa|up_4|NZ_CP011130.1_4622334_4622865_+,NA|162aa|up_3|NZ_CP011130.1_4622919_4623405_+,NA|57aa|down_4|NZ_CP011130.1_4637187_4637358_-	NA|342aa|up_9|NZ_CP011130.1_4601867_4602893_-	cd04196, GT_2_like_d, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|478aa|up_8|NZ_CP011130.1_4603643_4605077_-	NA	NA|92aa|up_7|NZ_CP011130.1_4605384_4605660_-	NA	NA|4633aa|up_6|NZ_CP011130.1_4605656_4619555_-	COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane]	NA|716aa|up_5|NZ_CP011130.1_4620069_4622217_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|177aa|up_4|NZ_CP011130.1_4622334_4622865_+	NA	NA|162aa|up_3|NZ_CP011130.1_4622919_4623405_+	NA	NA|1400aa|up_2|NZ_CP011130.1_4624350_4628550_-	TIGR01967, ATP-dependent_RNA_helicase_HrpA, RNA helicase HrpA	NA|196aa|up_1|NZ_CP011130.1_4628787_4629375_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|606aa|up_0|NZ_CP011130.1_4629688_4631506_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|571aa|down_0|NZ_CP011130.1_4631927_4633640_-	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|375aa|down_1|NZ_CP011130.1_4633906_4635031_-	pfam15984, Collagen_mid, Bacterial collagen, middle region	NA|82aa|down_2|NZ_CP011130.1_4635110_4635356_+	pfam09849, DUF2076, Uncharacterized protein conserved in bacteria (DUF2076)	NA|293aa|down_3|NZ_CP011130.1_4635968_4636847_-	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only]	NA|57aa|down_4|NZ_CP011130.1_4637187_4637358_-	NA	NA|328aa|down_5|NZ_CP011130.1_4637579_4638563_-	pfam01341, Glyco_hydro_6, Glycosyl hydrolases family 6	NA|230aa|down_6|NZ_CP011130.1_4639078_4639768_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|463aa|down_7|NZ_CP011130.1_4639760_4641149_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|366aa|down_8|NZ_CP011130.1_4641175_4642273_+	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|121aa|down_9|NZ_CP011130.1_4642368_4642731_+	PRK00124, PRK00124, YaiI/YqxD family protein
GCF_001442785.1_ASM144278v1	NZ_CP011130	Lysobacter capsici strain 55 chromosome, complete genome	16	5199356-5199435	15	CRISPRCasFinder	no	WYL	WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	Unclear	TCTGGAAGGATGACGCTGAAGTCTCTG	27	1	56	5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408|5199383-5199408	NZ_CP011130.1_19004-18979|NZ_CP011130.1_178764-178739|NZ_CP011130.1_1933110-1933085|NZ_CP011130.1_2046514-2046489|NZ_CP011130.1_2451094-2451069|NZ_CP011130.1_2465164-2465139|NZ_CP011130.1_2515693-2515668|NZ_CP011130.1_2704515-2704490|NZ_CP011130.1_3187237-3187212|NZ_CP011130.1_3520720-3520695|NZ_CP011130.1_3675822-3675797|NZ_CP011130.1_3852542-3852517|NZ_CP011130.1_4766069-4766044|NZ_CP011130.1_19184-19209|NZ_CP011130.1_178853-178878|NZ_CP011130.1_381018-381043|NZ_CP011130.1_540627-540652|NZ_CP011130.1_2280830-2280855|NZ_CP011130.1_2307457-2307482|NZ_CP011130.1_3638477-3638502|NZ_CP011130.1_19055-19030|NZ_CP011130.1_779940-779915|NZ_CP011130.1_828668-828643|NZ_CP011130.1_1131281-1131256|NZ_CP011130.1_1131450-1131425|NZ_CP011130.1_1465139-1465114|NZ_CP011130.1_1589208-1589183|NZ_CP011130.1_1624197-1624172|NZ_CP011130.1_1915150-1915125|NZ_CP011130.1_1937846-1937821|NZ_CP011130.1_1984627-1984602|NZ_CP011130.1_2120158-2120133|NZ_CP011130.1_2516141-2516116|NZ_CP011130.1_2720642-2720617|NZ_CP011130.1_2897642-2897617|NZ_CP011130.1_3165035-3165010|NZ_CP011130.1_5170307-5170282|NZ_CP011130.1_26020-26045|NZ_CP011130.1_162138-162163|NZ_CP011130.1_853292-853317|NZ_CP011130.1_985158-985183|NZ_CP011130.1_1131343-1131368|NZ_CP011130.1_2140331-2140356|NZ_CP011130.1_2570383-2570408|NZ_CP011130.1_2838048-2838073|NZ_CP011130.1_2891146-2891171|NZ_CP011130.1_2897900-2897925|NZ_CP011130.1_4042003-4042028|NZ_CP011130.1_4126932-4126957|NZ_CP011130.1_4480468-4480493|NZ_CP011130.1_4594687-4594712|NZ_CP011130.1_4646115-4646140|NZ_CP011130.1_5170192-5170217|NZ_CP011130.1_5712326-5712351|NZ_CP011130.1_5723605-5723630|NZ_CP011130.1_5809691-5809716	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	NA|195aa|up_7|NZ_CP011130.1_5191014_5191599_+,NA|72aa|up_6|NZ_CP011130.1_5191653_5191869_-,NA|74aa|up_4|NZ_CP011130.1_5195103_5195325_+,NA|139aa|down_4|NZ_CP011130.1_5203674_5204091_+,NA|194aa|down_9|NZ_CP011130.1_5211241_5211823_-	NA|313aa|up_9|NZ_CP011130.1_5189018_5189957_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	WYL|323aa|up_8|NZ_CP011130.1_5189956_5190925_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|195aa|up_7|NZ_CP011130.1_5191014_5191599_+	NA	NA|72aa|up_6|NZ_CP011130.1_5191653_5191869_-	NA	NA|1010aa|up_5|NZ_CP011130.1_5191991_5195021_+	cd02763, MopB_2, The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site	NA|74aa|up_4|NZ_CP011130.1_5195103_5195325_+	NA	NA|270aa|up_3|NZ_CP011130.1_5195321_5196131_+	cd10551, PsrB, polysulfide reductase beta (PsrB) subunit	NA|316aa|up_2|NZ_CP011130.1_5196239_5197187_+	pfam04976, DmsC, DMSO reductase anchor subunit (DmsC)	NA|225aa|up_1|NZ_CP011130.1_5197376_5198051_+	COG3137, COG3137, Putative salt-induced outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|313aa|up_0|NZ_CP011130.1_5198256_5199195_-	PRK00072, hemC, porphobilinogen deaminase; Reviewed	NA|245aa|down_0|NZ_CP011130.1_5199550_5200285_-	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|329aa|down_1|NZ_CP011130.1_5200305_5201292_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|234aa|down_2|NZ_CP011130.1_5201388_5202090_-	pfam02230, Abhydrolase_2, Phospholipase/Carboxylesterase	NA|330aa|down_3|NZ_CP011130.1_5202342_5203332_-	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal	NA|139aa|down_4|NZ_CP011130.1_5203674_5204091_+	NA	NA|441aa|down_5|NZ_CP011130.1_5204219_5205542_+	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|336aa|down_6|NZ_CP011130.1_5205538_5206546_+	TIGR00999, Nickel-cobalt-cadmium_resistance_protein_NccB, Membrane Fusion Protein cluster 2 (function with RND porters)	NA|1075aa|down_7|NZ_CP011130.1_5206598_5209823_+	TIGR00914, Nickel-cobalt-cadmium_resistance_protein_NccA, heavy metal efflux pump, CzcA family	NA|299aa|down_8|NZ_CP011130.1_5209949_5210846_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|194aa|down_9|NZ_CP011130.1_5211241_5211823_-	NA
GCF_001442785.1_ASM144278v1	NZ_CP011130	Lysobacter capsici strain 55 chromosome, complete genome	17	5671049-5671451	16	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	Orphan	CGCGCTGGCGTTGTCGCCGCTGGC	24	2	4	5671073-5671090|5671073-5671090|5671073-5671090|5671409-5671426	NZ_CP011130.1_2767976-2767993|NZ_CP011130.1_2861078-2861061|NZ_CP011130.1_5670509-5670526|NZ_CP011130.1_5668919-5668936	NA	7	7	Orphan	WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	NA|144aa|up_9|NZ_CP011130.1_5655050_5655482_+,NA|145aa|down_0|NZ_CP011130.1_5673979_5674414_+,NA|83aa|down_2|NZ_CP011130.1_5676238_5676487_+,NA|66aa|down_6|NZ_CP011130.1_5679946_5680144_+	NA|144aa|up_9|NZ_CP011130.1_5655050_5655482_+	NA	NA|918aa|up_8|NZ_CP011130.1_5656077_5658831_-	pfam03797, Autotransporter, Autotransporter beta-domain	NA|779aa|up_7|NZ_CP011130.1_5658999_5661336_-	COG4258, COG4258, Predicted exporter [General function prediction only]	NA|193aa|up_6|NZ_CP011130.1_5661335_5661914_-	cd16325, LolA, LolA, a periplasmic chaperone	NA|327aa|up_5|NZ_CP011130.1_5661981_5662962_-	COG4261, COG4261, Predicted acyltransferase [General function prediction only]	NA|107aa|up_4|NZ_CP011130.1_5662958_5663279_-	COG0764, FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]	NA|223aa|up_3|NZ_CP011130.1_5663558_5664227_-	COG4648, COG4648, Predicted membrane protein [Function unknown]	NA|90aa|up_2|NZ_CP011130.1_5664524_5664794_-	PRK09184, PRK09184, acyl carrier protein; Provisional	NA|469aa|up_1|NZ_CP011130.1_5665013_5666420_+	NF033113, halo_ClmS, chloramphenicol-biosynthetic FADH2-dependent halogenase CmlS	NA|333aa|up_0|NZ_CP011130.1_5666434_5667433_+	TIGR04444, hypothetical_protein_ThecoDRAFT_3161, chorismatase, FkbO/Hyg5 family	NA|145aa|down_0|NZ_CP011130.1_5673979_5674414_+	NA	NA|552aa|down_1|NZ_CP011130.1_5674406_5676062_+	cd04818, PA_subtilisin_1, PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1	NA|83aa|down_2|NZ_CP011130.1_5676238_5676487_+	NA	NA|530aa|down_3|NZ_CP011130.1_5676615_5678205_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|286aa|down_4|NZ_CP011130.1_5678201_5679059_-	PRK15406, PRK15406, oligopeptide ABC transporter permease OppC; Provisional	NA|173aa|down_5|NZ_CP011130.1_5679299_5679818_+	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|66aa|down_6|NZ_CP011130.1_5679946_5680144_+	NA	NA|487aa|down_7|NZ_CP011130.1_5680315_5681776_+	pfam07396, Porin_O_P, Phosphate-selective porin O and P	NA|335aa|down_8|NZ_CP011130.1_5681809_5682814_+	COG1613, Sbp, ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|79aa|down_9|NZ_CP011130.1_5683091_5683328_-	cd00387, Ribosomal_L7_L12, Ribosomal protein L7/L12
GCF_001442785.1_ASM144278v1	NZ_CP011130	Lysobacter capsici strain 55 chromosome, complete genome	18	5671709-5671774	17	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	Orphan	CGCGCTGGCGTTGTCGCCGCTGGC	24	1	3	5671733-5671750|5671733-5671750|5671733-5671750	NZ_CP011130.1_2767976-2767993|NZ_CP011130.1_2861078-2861061|NZ_CP011130.1_5670509-5670526	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	NA|144aa|up_9|NZ_CP011130.1_5655050_5655482_+,NA|145aa|down_0|NZ_CP011130.1_5673979_5674414_+,NA|83aa|down_2|NZ_CP011130.1_5676238_5676487_+,NA|66aa|down_6|NZ_CP011130.1_5679946_5680144_+	NA|144aa|up_9|NZ_CP011130.1_5655050_5655482_+	NA	NA|918aa|up_8|NZ_CP011130.1_5656077_5658831_-	pfam03797, Autotransporter, Autotransporter beta-domain	NA|779aa|up_7|NZ_CP011130.1_5658999_5661336_-	COG4258, COG4258, Predicted exporter [General function prediction only]	NA|193aa|up_6|NZ_CP011130.1_5661335_5661914_-	cd16325, LolA, LolA, a periplasmic chaperone	NA|327aa|up_5|NZ_CP011130.1_5661981_5662962_-	COG4261, COG4261, Predicted acyltransferase [General function prediction only]	NA|107aa|up_4|NZ_CP011130.1_5662958_5663279_-	COG0764, FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]	NA|223aa|up_3|NZ_CP011130.1_5663558_5664227_-	COG4648, COG4648, Predicted membrane protein [Function unknown]	NA|90aa|up_2|NZ_CP011130.1_5664524_5664794_-	PRK09184, PRK09184, acyl carrier protein; Provisional	NA|469aa|up_1|NZ_CP011130.1_5665013_5666420_+	NF033113, halo_ClmS, chloramphenicol-biosynthetic FADH2-dependent halogenase CmlS	NA|333aa|up_0|NZ_CP011130.1_5666434_5667433_+	TIGR04444, hypothetical_protein_ThecoDRAFT_3161, chorismatase, FkbO/Hyg5 family	NA|145aa|down_0|NZ_CP011130.1_5673979_5674414_+	NA	NA|552aa|down_1|NZ_CP011130.1_5674406_5676062_+	cd04818, PA_subtilisin_1, PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1	NA|83aa|down_2|NZ_CP011130.1_5676238_5676487_+	NA	NA|530aa|down_3|NZ_CP011130.1_5676615_5678205_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|286aa|down_4|NZ_CP011130.1_5678201_5679059_-	PRK15406, PRK15406, oligopeptide ABC transporter permease OppC; Provisional	NA|173aa|down_5|NZ_CP011130.1_5679299_5679818_+	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|66aa|down_6|NZ_CP011130.1_5679946_5680144_+	NA	NA|487aa|down_7|NZ_CP011130.1_5680315_5681776_+	pfam07396, Porin_O_P, Phosphate-selective porin O and P	NA|335aa|down_8|NZ_CP011130.1_5681809_5682814_+	COG1613, Sbp, ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|79aa|down_9|NZ_CP011130.1_5683091_5683328_-	cd00387, Ribosomal_L7_L12, Ribosomal protein L7/L12
GCF_001442785.1_ASM144278v1	NZ_CP011130	Lysobacter capsici strain 55 chromosome, complete genome	19	5712391-5712492	18	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	Orphan	CGCCGAAGTAAAGCAGAGCCCGC	23	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	NA|549aa|up_8|NZ_CP011130.1_5702191_5703838_-,NA|421aa|up_2|NZ_CP011130.1_5708866_5710129_+,NA|416aa|up_1|NZ_CP011130.1_5710125_5711373_+,NA|144aa|down_6|NZ_CP011130.1_5718618_5719050_+	NA|405aa|up_9|NZ_CP011130.1_5700980_5702195_-	pfam14258, DUF4350, Domain of unknown function (DUF4350)	NA|549aa|up_8|NZ_CP011130.1_5702191_5703838_-	NA	NA|338aa|up_7|NZ_CP011130.1_5703834_5704848_-	pfam01944, SpoIIM, Stage II sporulation protein M	NA|228aa|up_6|NZ_CP011130.1_5704844_5705528_-	pfam06271, RDD, RDD family	NA|171aa|up_5|NZ_CP011130.1_5705527_5706040_-	pfam06271, RDD, RDD family	NA|181aa|up_4|NZ_CP011130.1_5706107_5706650_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|476aa|up_3|NZ_CP011130.1_5706936_5708364_+	cd07133, ALDH_CALDH_CalB, Coniferyl aldehyde dehydrogenase-like	NA|421aa|up_2|NZ_CP011130.1_5708866_5710129_+	NA	NA|416aa|up_1|NZ_CP011130.1_5710125_5711373_+	NA	NA|257aa|up_0|NZ_CP011130.1_5711401_5712172_+	cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases	NA|92aa|down_0|NZ_CP011130.1_5712604_5712880_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|467aa|down_1|NZ_CP011130.1_5713214_5714615_-	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]	NA|208aa|down_2|NZ_CP011130.1_5714833_5715457_+	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism]	NA|222aa|down_3|NZ_CP011130.1_5715644_5716310_+	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|273aa|down_4|NZ_CP011130.1_5716499_5717318_+	pfam13614, AAA_31, AAA domain	NA|306aa|down_5|NZ_CP011130.1_5717314_5718232_+	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|144aa|down_6|NZ_CP011130.1_5718618_5719050_+	NA	NA|322aa|down_7|NZ_CP011130.1_5719352_5720318_+	cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs	NA|242aa|down_8|NZ_CP011130.1_5720643_5721369_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|112aa|down_9|NZ_CP011130.1_5721379_5721715_+	COG3952, COG3952, Predicted membrane protein [Function unknown]
GCF_001442785.1_ASM144278v1	NZ_CP011130	Lysobacter capsici strain 55 chromosome, complete genome	20	6263232-6263388	19	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	Orphan	TTGCCTTCGGCGGTCTTGCCCGCGGCCTTGGCGT	34	1	1	6263266-6263291	NZ_CP011130.1_2114913-2114938	NA	2	2	Orphan	WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	NA,NA|84aa|down_1|NZ_CP011130.1_6264530_6264782_+,NA|201aa|down_3|NZ_CP011130.1_6267866_6268469_+	NA|277aa|up_9|NZ_CP011130.1_6253400_6254231_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|233aa|up_8|NZ_CP011130.1_6254291_6254990_-	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain	NA|307aa|up_7|NZ_CP011130.1_6255090_6256011_+	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|546aa|up_6|NZ_CP011130.1_6256027_6257665_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|459aa|up_5|NZ_CP011130.1_6257831_6259208_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|247aa|up_4|NZ_CP011130.1_6259204_6259945_-	PRK09468, ompR, osmolarity response regulator; Provisional	NA|193aa|up_3|NZ_CP011130.1_6260073_6260652_-	cd03012, TlpA_like_DipZ_like, TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain	NA|224aa|up_2|NZ_CP011130.1_6260648_6261320_-	COG2717, COG2717, Predicted membrane protein [Function unknown]	NA|256aa|up_1|NZ_CP011130.1_6261309_6262077_-	COG3219, COG3219, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|up_0|NZ_CP011130.1_6262069_6262921_-	PRK05409, PRK05409, hypothetical protein; Provisional	NA|225aa|down_0|NZ_CP011130.1_6263625_6264300_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|84aa|down_1|NZ_CP011130.1_6264530_6264782_+	NA	NA|789aa|down_2|NZ_CP011130.1_6265075_6267442_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|201aa|down_3|NZ_CP011130.1_6267866_6268469_+	NA	NA|436aa|down_4|NZ_CP011130.1_6268468_6269776_+	cd00519, Lipase_3, Lipase (class 3)	NA|259aa|down_5|NZ_CP011130.1_6269914_6270691_-	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]	NA|298aa|down_6|NZ_CP011130.1_6270777_6271671_+	cd08461, PBP2_DntR_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold	NA|202aa|down_7|NZ_CP011130.1_6271800_6272406_-	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan	NA|340aa|down_8|NZ_CP011130.1_6272559_6273579_-	cd05640, M28_like, M28 Zn-peptidase; uncharacterized subfamily	NA|322aa|down_9|NZ_CP011130.1_6273607_6274573_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]
GCF_001442785.1_ASM144278v1	NZ_CP011130	Lysobacter capsici strain 55 chromosome, complete genome	21	6298762-6298879	20	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	Orphan	CGCCGAAGTAAGGCAGAGCCCGCTTTCGCGGGAATGACG	39	0	0	NA	NA	I-E	1	1	Orphan	WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	NA|170aa|up_6|NZ_CP011130.1_6291556_6292066_+,NA|123aa|down_8|NZ_CP011130.1_6308039_6308408_+	NA|716aa|up_9|NZ_CP011130.1_6286345_6288493_-	COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism]	NA|238aa|up_8|NZ_CP011130.1_6288577_6289291_-	COG2977, EntD, Phosphopantetheinyl transferase component of siderophore synthetase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|553aa|up_7|NZ_CP011130.1_6289564_6291223_-	cd09597, M4_TLP, Peptidase M4 family including thermolysin, protealysin, aureolysin, and neutral protease	NA|170aa|up_6|NZ_CP011130.1_6291556_6292066_+	NA	NA|548aa|up_5|NZ_CP011130.1_6292193_6293837_-	cd09597, M4_TLP, Peptidase M4 family including thermolysin, protealysin, aureolysin, and neutral protease	NA|398aa|up_4|NZ_CP011130.1_6294234_6295428_-	pfam03738, GSP_synth, Glutathionylspermidine synthase preATP-grasp	NA|207aa|up_3|NZ_CP011130.1_6295516_6296137_-	pfam06693, DUF1190, Protein of unknown function (DUF1190)	NA|136aa|up_2|NZ_CP011130.1_6296145_6296553_-	COG3766, COG3766, Predicted membrane protein [Function unknown]	NA|224aa|up_1|NZ_CP011130.1_6296617_6297289_-	pfam10679, DUF2491, Protein of unknown function (DUF2491)	NA|352aa|up_0|NZ_CP011130.1_6297410_6298466_-	pfam07885, Ion_trans_2, Ion channel	NA|255aa|down_0|NZ_CP011130.1_6299014_6299779_-	pfam04012, PspA_IM30, PspA/IM30 family	NA|139aa|down_1|NZ_CP011130.1_6299775_6300192_-	pfam09938, DUF2170, Uncharacterized protein conserved in bacteria (DUF2170)	NA|172aa|down_2|NZ_CP011130.1_6300641_6301157_+	COG3245, CycB, Cytochrome c5 [Energy production and conversion]	NA|599aa|down_3|NZ_CP011130.1_6301863_6303660_+	COG2374, COG2374, Predicted extracellular nuclease [General function prediction only]	NA|233aa|down_4|NZ_CP011130.1_6303898_6304597_+	COG2945, COG2945, Predicted hydrolase of the alpha/beta superfamily [General function prediction only]	NA|360aa|down_5|NZ_CP011130.1_6304649_6305729_+	COG4461, LprI, Uncharacterized protein conserved in bacteria, putative lipoprotein [Function unknown]	NA|361aa|down_6|NZ_CP011130.1_6305764_6306847_+	COG1485, COG1485, Predicted ATPase [General function prediction only]	NA|132aa|down_7|NZ_CP011130.1_6307321_6307717_+	cd13834, HU_like, DNA-binding proteins similar to HU domains	NA|123aa|down_8|NZ_CP011130.1_6308039_6308408_+	NA	NA|269aa|down_9|NZ_CP011130.1_6308555_6309362_+	COG3570, StrB, Streptomycin 6-kinase [Defense mechanisms]
GCF_001442785.1_ASM144278v1	NZ_CP011130	Lysobacter capsici strain 55 chromosome, complete genome	22	6354150-6354276	21	CRISPRCasFinder	no		WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	Orphan	GAGAGTCGGGAATCGTAAATGCGGCCGCGCGGCGCTCTGGCT	42	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,csa3,cas3,RT,Cas9_archaeal,DinG	NA|86aa|up_8|NZ_CP011130.1_6343974_6344232_+,NA|133aa|up_6|NZ_CP011130.1_6344900_6345299_-,NA|586aa|up_5|NZ_CP011130.1_6345991_6347749_+,NA|597aa|up_4|NZ_CP011130.1_6347831_6349622_+,NA|120aa|up_0|NZ_CP011130.1_6353669_6354029_-,NA|144aa|down_1|NZ_CP011130.1_6356929_6357361_-,NA|153aa|down_3|NZ_CP011130.1_6358381_6358840_-,NA|289aa|down_5|NZ_CP011130.1_6362689_6363556_+,NA|180aa|down_6|NZ_CP011130.1_6363672_6364212_-	NA|274aa|up_9|NZ_CP011130.1_6343149_6343971_+	COG4798, COG4798, Predicted methyltransferase [General function prediction only]	NA|86aa|up_8|NZ_CP011130.1_6343974_6344232_+	NA	NA|178aa|up_7|NZ_CP011130.1_6344302_6344836_+	cd02566, PseudoU_synth_RluE, Pseudouridine synthase, Escherichia coli RluE	NA|133aa|up_6|NZ_CP011130.1_6344900_6345299_-	NA	NA|586aa|up_5|NZ_CP011130.1_6345991_6347749_+	NA	NA|597aa|up_4|NZ_CP011130.1_6347831_6349622_+	NA	NA|324aa|up_3|NZ_CP011130.1_6349643_6350615_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|318aa|up_2|NZ_CP011130.1_6350736_6351690_-	cd19081, AKR_AKR9C1, AKR9C family of aldo-keto reductase (AKR)	NA|367aa|up_1|NZ_CP011130.1_6351941_6353042_+	cd17538, REC_D1_PleD-like, first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains	NA|120aa|up_0|NZ_CP011130.1_6353669_6354029_-	NA	NA|849aa|down_0|NZ_CP011130.1_6354313_6356860_-	TIGR01970, ATP-dependent_RNA_helicase_HrpB, ATP-dependent helicase HrpB	NA|144aa|down_1|NZ_CP011130.1_6356929_6357361_-	NA	NA|265aa|down_2|NZ_CP011130.1_6357530_6358325_+	PRK10425, PRK10425, 3'-5' ssDNA/RNA exonuclease TatD	NA|153aa|down_3|NZ_CP011130.1_6358381_6358840_-	NA	NA|1045aa|down_4|NZ_CP011130.1_6359090_6362225_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|289aa|down_5|NZ_CP011130.1_6362689_6363556_+	NA	NA|180aa|down_6|NZ_CP011130.1_6363672_6364212_-	NA	NA|273aa|down_7|NZ_CP011130.1_6364348_6365167_-	PRK15066, PRK15066, inner membrane transport permease; Provisional	NA|343aa|down_8|NZ_CP011130.1_6365163_6366192_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|249aa|down_9|NZ_CP011130.1_6366577_6367324_+	cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin
