The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP009623	Staphylococcus agnetis strain 908 chromosome, complete genome	2474434	14476	20209	2474434		Streptococcus_phage(33.33%)	6	NA	NA
WP_060550613.1|14476_15421_+	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	49.8	6.5e-84
WP_060550614.1|15586_16510_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	32.8	4.4e-08
WP_037567903.1|16496_17504_+	YvcK family protein	NA	A1IMD5	Streptococcus_phage	38.2	5.4e-52
WP_037567905.1|17639_18584_+	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.3	2.9e-52
WP_037567907.1|18625_19207_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	56.3	1.6e-53
WP_156407404.1|20044_20209_+	hypothetical protein	NA	A0A1S6L1H5	Staphylococcus_phage	68.6	3.0e-13
>prophage 2
NZ_CP009623	Staphylococcus agnetis strain 908 chromosome, complete genome	2474434	162246	231123	2474434	portal,transposase,terminase,head,holin,capsid,protease,integrase,tail	Staphylococcus_phage(48.15%)	89	160626:160641	183793:183808
160626:160641	attL	TAAAGGTCAATCAAAT	NA	NA	NA	NA
WP_037566249.1|162246_162849_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_060550701.1|162855_163041_-	DUF2187 family protein	NA	NA	NA	NA	NA
WP_060550702.1|163216_164209_+	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_037565942.1|164264_164492_-	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_060550703.1|164718_165357_+	competence protein ComK	NA	NA	NA	NA	NA
WP_060552462.1|165730_166180_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001284658.1|166819_167200_-	penicillinase repressor BlaI	NA	NA	NA	NA	NA
WP_001096367.1|167189_168947_-	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA	NA
WP_000733622.1|169053_169899_+	penicillin-hydrolyzing class A beta-lactamase BlaZ	NA	A0A1B0VBP7	Salmonella_phage	33.9	4.4e-31
WP_000612779.1|170212_170623_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	53.5	3.1e-30
WP_000368919.1|170665_172036_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000410574.1|172040_172406_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_060550704.1|172414_174478_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_000706213.1|174480_175593_-|integrase	tyrosine-type recombinase/integrase	integrase	P97010	Streptococcus_pyogenes_phage	31.6	1.7e-11
WP_082624712.1|175809_176073_+	YolD-like family protein	NA	NA	NA	NA	NA
WP_060550705.1|176445_177495_-|integrase	site-specific integrase	integrase	W5R968	Staphylococcus_phage	75.0	5.4e-156
WP_060550706.1|177807_178431_+	hypothetical protein	NA	B7T0F3	Staphylococcus_virus	74.9	1.6e-78
WP_167337565.1|178795_178957_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060550707.1|178969_179641_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0F6N3H6	Staphylococcus_phage	46.6	4.5e-47
WP_060550708.1|179654_179993_-	helix-turn-helix transcriptional regulator	NA	R4IH08	Staphylococcus_phage	72.7	2.4e-41
WP_060550709.1|180256_180451_+	helix-turn-helix transcriptional regulator	NA	A0A0F6N3M9	Staphylococcus_phage	84.4	9.4e-22
WP_060550710.1|180450_181239_+	antirepressor	NA	A0A2H4J5J5	uncultured_Caudovirales_phage	77.2	6.8e-111
WP_060550711.1|181250_181472_+	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	93.2	1.3e-30
WP_060550712.1|181605_181818_-	hypothetical protein	NA	A0A2H4JBA9	uncultured_Caudovirales_phage	58.0	2.2e-16
WP_060550713.1|181890_182103_+	hypothetical protein	NA	A0A1W6JNP3	Staphylococcus_phage	69.6	1.0e-21
WP_167337566.1|182096_182270_+	hypothetical protein	NA	Q4ZC27	Staphylococcus_virus	65.3	1.5e-07
WP_060550714.1|182349_182616_+	DUF1108 family protein	NA	A0A1J0MFD3	Staphylococcus_phage	33.3	8.9e-07
WP_060550715.1|182612_182831_+	DUF2483 family protein	NA	Q4ZC24	Staphylococcus_virus	87.5	1.6e-30
WP_060550716.1|182831_183494_+	single-stranded DNA-binding protein	NA	A0A2H4J7J4	uncultured_Caudovirales_phage	67.7	1.4e-77
WP_060550717.1|183493_183892_+	single-stranded DNA-binding protein	NA	Q4ZC22	Staphylococcus_virus	92.4	1.3e-62
183793:183808	attR	TAAAGGTCAATCAAAT	NA	NA	NA	NA
WP_060550718.1|183903_184578_+	hypothetical protein	NA	A0A1J0MFX6	Staphylococcus_phage	82.9	4.0e-104
WP_060550720.1|184816_185617_+	DnaD domain protein	NA	A0A223LFI6	Staphylococcus_phage	80.5	3.9e-82
WP_060550721.1|185613_185955_+	hypothetical protein	NA	Q4ZC18	Staphylococcus_virus	73.5	3.8e-42
WP_060550722.1|185947_187186_+	AAA family ATPase	NA	Q4ZC17	Staphylococcus_virus	97.8	2.8e-228
WP_060550724.1|187387_187810_+	RusA family crossover junction endodeoxyribonuclease	NA	Q4ZC15	Staphylococcus_virus	97.1	9.4e-75
WP_060550725.1|187811_188234_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060550726.1|188230_188641_+	DUF3310 domain-containing protein	NA	A0A1J0MFM3	Staphylococcus_phage	44.9	5.4e-27
WP_060550727.1|188637_189132_+	hypothetical protein	NA	H9A100	Staphylococcus_phage	72.2	6.5e-59
WP_060550728.1|189124_189337_+	DUF3269 family protein	NA	Q4ZC11	Staphylococcus_virus	87.1	2.7e-30
WP_060550729.1|189348_189753_+	hypothetical protein	NA	A0A0U1ZWJ6	Staphylococcus_phage	36.7	3.5e-10
WP_060552463.1|189848_190082_+	hypothetical protein	NA	Q4ZC08	Staphylococcus_virus	86.2	1.3e-25
WP_060550730.1|190065_190362_+	hypothetical protein	NA	Q4Z930	Staphylococcus_phage	83.5	3.9e-35
WP_167337567.1|190387_190540_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060550732.1|190532_190763_+	hypothetical protein	NA	A0A2H4JHN5	uncultured_Caudovirales_phage	38.2	2.5e-05
WP_060550733.1|190746_191106_+	nuclease	NA	Q4ZC06	Staphylococcus_virus	90.8	4.0e-58
WP_060550734.1|191106_191625_+	dUTP pyrophosphatase	NA	Q4ZC04	Staphylococcus_virus	77.2	4.5e-63
WP_060550735.1|191943_192432_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060550737.1|193033_193426_+	HNH endonuclease	NA	A0A2H4J2W1	uncultured_Caudovirales_phage	71.2	2.2e-41
WP_060550738.1|193558_194029_+|terminase	phage terminase small subunit P27 family	terminase	A0A1W6JPP8	Staphylococcus_phage	86.5	1.5e-76
WP_082624713.1|194021_195155_+	hypothetical protein	NA	A0A1W6JPU1	Staphylococcus_phage	86.2	2.5e-191
WP_078096487.1|195428_195902_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	45.0	8.7e-29
WP_001085423.1|195882_196413_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_000166623.1|196524_196887_-	cystatin-like fold lipoprotein	NA	NA	NA	NA	NA
WP_000850646.1|196933_197527_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031882365.1|197532_198561_-	CHAP domain-containing protein	NA	NA	NA	NA	NA
WP_000875438.1|198550_200482_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000274938.1|200581_200983_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042744079.1|200987_202346_-	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	29.8	3.5e-46
WP_031882373.1|202350_202683_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031882368.1|202679_202910_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060550739.1|202913_203132_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060550740.1|203143_205639_-	DUF87 domain-containing protein	NA	NA	NA	NA	NA
WP_000358151.1|205673_206063_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000369240.1|206068_206329_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060550741.1|206333_207410_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_050438939.1|207637_208777_-	replication initiation factor domain-containing protein	NA	NA	NA	NA	NA
WP_001007543.1|208942_209368_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000595049.1|209389_209713_-	DUF961 family protein	NA	NA	NA	NA	NA
WP_082624714.1|210184_210844_+	hypothetical protein	NA	A0A2H4J313	uncultured_Caudovirales_phage	91.9	3.3e-111
WP_060550742.1|210855_211041_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060550743.1|211050_212280_+|portal	phage portal protein	portal	A0A2H4J5A4	uncultured_Caudovirales_phage	59.7	4.4e-141
WP_060550744.1|212266_212830_+|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JDQ0	uncultured_Caudovirales_phage	65.2	6.0e-69
WP_060550745.1|212869_214186_+|capsid	phage major capsid protein	capsid	A0A2H4J824	uncultured_Caudovirales_phage	84.5	1.7e-138
WP_167337568.1|214205_214379_+	hypothetical protein	NA	A0A2H4JAK4	uncultured_Caudovirales_phage	66.1	9.2e-13
WP_060550746.1|214387_214699_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2H4JB23	uncultured_Caudovirales_phage	86.0	5.9e-42
WP_060550747.1|214680_215004_+|head,tail	head-tail adaptor protein	head,tail	A0A2H4J5V5	uncultured_Caudovirales_phage	78.5	8.8e-41
WP_060550748.1|215000_215426_+	hypothetical protein	NA	A0A0D4DCC4	Staphylococcus_phage	68.6	2.8e-50
WP_060550749.1|215415_215829_+	hypothetical protein	NA	U3PBL6	Staphylococcus_phage	73.4	3.5e-50
WP_060550750.1|215835_216693_+	hypothetical protein	NA	A0A0D4DCZ2	Staphylococcus_phage	85.5	7.2e-90
WP_060550751.1|216759_217299_+	hypothetical protein	NA	A0A1W6JPW8	Staphylococcus_phage	52.0	9.6e-40
WP_156407405.1|217313_217481_+	hypothetical protein	NA	U3PG11	Staphylococcus_phage	83.6	2.2e-19
WP_060550752.1|217499_223304_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A0D4DC81	Staphylococcus_phage	66.0	2.5e-08
WP_060550753.1|223304_224795_+	hypothetical protein	NA	Q4ZD64	Staphylococcus_phage	37.0	3.0e-91
WP_060550754.1|224796_228279_+	hypothetical protein	NA	A0A1Q1PW30	Staphylococcus_phage	35.6	3.7e-161
WP_156407406.1|228289_228439_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060550755.1|228481_228814_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060550756.1|228832_229132_+	DUF2951 family protein	NA	A0A1J0MFW4	Staphylococcus_phage	86.9	1.2e-39
WP_060550757.1|229262_229697_+|holin	phage holin	holin	Q4ZC45	Staphylococcus_virus	89.6	5.7e-67
WP_060550758.1|229677_231123_+	CHAP domain-containing protein	NA	Q4ZC44	Staphylococcus_virus	90.9	8.5e-269
>prophage 3
NZ_CP009623	Staphylococcus agnetis strain 908 chromosome, complete genome	2474434	275333	283761	2474434		Prochlorococcus_phage(33.33%)	9	NA	NA
WP_060550786.1|275333_275816_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	3.6e-22
WP_060550787.1|275802_276930_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_060550788.1|276926_277634_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	G8EYA2	Synechococcus_phage	43.3	1.3e-47
WP_037566003.1|277636_277906_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_039646367.1|277905_278577_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_060550789.1|278569_280759_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.3	6.9e-137
WP_060552466.1|280737_282159_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.0	1.6e-49
WP_060550790.1|282163_283192_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	42.9	3.1e-63
WP_060550791.1|283194_283761_+	phosphoribosylglycinamide formyltransferase	NA	E3SNR5	Prochlorococcus_phage	37.3	1.1e-25
>prophage 4
NZ_CP009623	Staphylococcus agnetis strain 908 chromosome, complete genome	2474434	678518	690187	2474434		Bacillus_phage(37.5%)	14	NA	NA
WP_060551088.1|678518_679895_-	ATP-dependent DNA helicase RecQ	NA	J2YAJ8	Acanthamoeba_polyphaga_lentillevirus	33.6	5.1e-53
WP_060551089.1|679884_680838_-	hypothetical protein	NA	NA	NA	NA	NA
WP_037564263.1|680943_681192_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	53.3	3.1e-17
WP_060551090.1|681310_681859_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_060552477.1|681977_683720_-	HAMP domain-containing protein	NA	W8CYF6	Bacillus_phage	31.3	3.1e-31
WP_060551091.1|683703_684429_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	41.4	2.7e-45
WP_037564259.1|684556_685297_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_060551092.1|685293_685839_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	41.9	1.5e-08
WP_060551093.1|685822_686557_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	25.4	7.2e-06
WP_060552478.1|686668_687157_+	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_037564247.1|687177_688065_-	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	31.8	1.6e-39
WP_060551094.1|688101_688554_-	transcriptional repressor	NA	NA	NA	NA	NA
WP_060551095.1|688657_689200_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_060551096.1|689278_690187_+	aldo/keto reductase	NA	A0A1V0SKP9	Klosneuvirus	33.1	7.6e-05
>prophage 5
NZ_CP009623	Staphylococcus agnetis strain 908 chromosome, complete genome	2474434	818861	830423	2474434	tRNA	uncultured_Mediterranean_phage(42.86%)	8	NA	NA
WP_060551191.1|818861_821051_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	35.5	1.9e-09
WP_037565470.1|821462_821981_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	48.8	4.0e-27
WP_060551192.1|821992_824275_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.1	1.1e-68
WP_060551193.1|824367_826647_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	31.1	7.2e-28
WP_037565473.1|826955_827219_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	49.1	8.8e-07
WP_060551194.1|827235_828375_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	45.5	2.4e-88
WP_060551195.1|828388_829414_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_060551196.1|829427_830423_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.9	7.5e-06
>prophage 6
NZ_CP009623	Staphylococcus agnetis strain 908 chromosome, complete genome	2474434	940331	1020928	2474434	portal,tRNA,terminase,head,capsid,protease,integrase,tail	Staphylococcus_phage(60.27%)	101	979279:979294	1024549:1024564
WP_060551279.1|940331_941594_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	76.7	1.7e-31
WP_037565581.1|941636_941948_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	67.0	4.2e-32
WP_060551280.1|941970_944382_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	80.8	0.0e+00
WP_060551281.1|944742_945924_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	64.1	2.2e-137
WP_060551282.1|946035_946995_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	78.5	3.5e-61
WP_060551283.1|946991_947555_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	53.0	9.6e-51
WP_060551284.1|947652_948063_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_037565589.1|948205_949159_-	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_060551285.1|949287_950109_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_060551286.1|950244_950577_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060551287.1|951111_952152_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	66.4	1.5e-121
WP_037565594.1|952249_952708_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	65.8	2.4e-52
WP_060551288.1|952719_953901_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	66.2	7.7e-151
WP_060551289.1|953914_954544_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	56.2	1.2e-57
WP_060551290.1|954548_955595_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	52.3	3.3e-105
WP_060551291.1|955980_957696_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	56.5	1.7e-13
WP_060551292.1|958011_958878_-	autolysin	NA	A0A0E3T9J6	Staphylococcus_phage	41.0	3.8e-38
WP_060551293.1|959041_959266_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060551294.1|959466_959928_+	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	36.8	1.5e-17
WP_157950709.1|960045_960378_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060551295.1|960360_960810_-	hypothetical protein	NA	NA	NA	NA	NA
WP_037565603.1|960903_961614_-	transaldolase	NA	M1PR54	Cyanophage	38.5	2.6e-21
WP_037565604.1|961767_962070_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060551296.1|962090_962456_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	52.1	2.9e-24
WP_060551297.1|962452_962818_+	fluoride efflux transporter CrcB	NA	NA	NA	NA	NA
WP_060551298.1|963002_963839_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	63.7	2.6e-100
WP_060551299.1|964052_964961_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	69.0	1.6e-92
WP_060551300.1|965049_966249_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	79.3	6.2e-180
WP_060551301.1|966680_968261_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	76.4	1.4e-243
WP_060551302.1|968285_969071_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	61.2	1.6e-83
WP_060551303.1|969051_969522_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	49.0	2.9e-40
WP_037565613.1|969584_969815_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	78.4	2.9e-30
WP_060551304.1|969811_970801_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	47.4	1.3e-87
WP_060551305.1|970797_972204_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	52.4	4.9e-136
WP_060551306.1|972480_972774_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060551307.1|973280_973772_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_060551308.1|973809_974052_-	DUF2273 domain-containing protein	NA	NA	NA	NA	NA
WP_060551309.1|974072_974618_-	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA	NA
WP_060551310.1|975179_976034_-|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_060551311.1|976747_977593_-|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_060551312.1|978687_979131_-	DUF2335 domain-containing protein	NA	NA	NA	NA	NA
WP_060551313.1|979120_979345_-	hypothetical protein	NA	NA	NA	NA	NA
979279:979294	attL	CAAAAGAACTTGAAAA	NA	NA	NA	NA
WP_060551314.1|979636_980374_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_060551315.1|980955_982425_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A1J0MFY3	Staphylococcus_phage	81.4	8.5e-232
WP_060551316.1|982426_982675_-	hypothetical protein	NA	Q4ZD59	Staphylococcus_phage	92.7	2.0e-37
WP_060551317.1|982814_983159_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060551318.1|983207_983522_-	hypothetical protein	NA	NA	NA	NA	NA
WP_156407408.1|983564_983714_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060551319.1|983723_987206_-	hypothetical protein	NA	A0A1Q1PW30	Staphylococcus_phage	36.0	6.8e-163
WP_060551320.1|987207_988695_-	hypothetical protein	NA	Q4ZD64	Staphylococcus_phage	41.5	1.2e-108
WP_060551321.1|988691_993503_-|tail	phage tail tape measure protein	tail	A0A1J0MFP9	Staphylococcus_phage	60.2	5.0e-297
WP_165885626.1|993519_993663_-	hypothetical protein	NA	A0A2H4JAE7	uncultured_Caudovirales_phage	68.2	1.0e-09
WP_060551322.1|993722_994094_-	hypothetical protein	NA	A0A2H4JH57	uncultured_Caudovirales_phage	62.6	1.5e-36
WP_086375142.1|994161_994347_-	hypothetical protein	NA	A0A0N9STM6	Staphylococcus_phage	55.7	1.4e-11
WP_060551323.1|994358_994982_-|tail	phage tail protein	tail	A0A2H4JDS5	uncultured_Caudovirales_phage	62.9	1.6e-70
WP_060552487.1|994994_995390_-	hypothetical protein	NA	A0A2H4JBV0	uncultured_Caudovirales_phage	43.3	1.5e-21
WP_060551324.1|995410_995800_-	hypothetical protein	NA	A0A2H4J7V9	uncultured_Caudovirales_phage	56.8	9.6e-34
WP_060551325.1|995789_996158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060551326.1|996141_996429_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2H4JAA9	uncultured_Caudovirales_phage	57.8	3.4e-20
WP_060551327.1|996446_997646_-|capsid	phage major capsid protein	capsid	A0A2H4JHT8	uncultured_Caudovirales_phage	47.3	5.5e-88
WP_060552488.1|997657_998371_-|protease	Clp protease ClpP	protease	A0A2H4J8Y7	uncultured_Caudovirales_phage	53.5	1.2e-50
WP_060551328.1|998333_999512_-|portal	phage portal protein	portal	A8AT96	Listeria_phage	49.6	8.6e-102
WP_060551329.1|999531_1001199_-|terminase	terminase large subunit	terminase	A0A059T7Q8	Listeria_phage	60.5	2.4e-198
WP_060551330.1|1001185_1001569_-	hypothetical protein	NA	A0A1X9H0I2	Staphylococcus_phage	65.5	4.1e-29
WP_060552489.1|1001705_1002005_-	HNH endonuclease	NA	A0A1W6JQ75	Staphylococcus_phage	70.0	4.8e-33
WP_060551331.1|1002487_1002883_-	antitoxin HicB	NA	M1PG28	Streptococcus_phage	44.0	7.5e-26
WP_037567940.1|1002917_1003103_-	type II toxin-antitoxin system HicA family toxin	NA	A0A0D4DC32	Acinetobacter_phage	75.4	7.1e-19
WP_167337572.1|1003275_1003677_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060551333.1|1004001_1004517_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060551334.1|1004795_1004984_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060551335.1|1005034_1005337_-	hypothetical protein	NA	A0A2H4J4F6	uncultured_Caudovirales_phage	76.0	1.1e-37
WP_060551336.1|1005337_1005697_-	nuclease	NA	Q4ZC06	Staphylococcus_virus	86.6	5.4e-55
WP_060552490.1|1005683_1005911_-	hypothetical protein	NA	Q4ZC08	Staphylococcus_virus	83.9	5.8e-23
WP_060551337.1|1006000_1006396_-	hypothetical protein	NA	Q4ZC09	Staphylococcus_virus	63.4	6.8e-35
WP_060551338.1|1006408_1006621_-	DUF3269 family protein	NA	Q4ZC11	Staphylococcus_virus	91.4	6.4e-32
WP_060551339.1|1006617_1007109_-	hypothetical protein	NA	H9A100	Staphylococcus_phage	71.5	1.1e-58
WP_060551340.1|1007105_1007336_-	DUF3310 domain-containing protein	NA	A0A0D4DCF1	Staphylococcus_phage	79.2	1.0e-27
WP_060551341.1|1007328_1007514_-	hypothetical protein	NA	Q4ZC13	Staphylococcus_virus	76.6	1.1e-19
WP_060551342.1|1007510_1007933_-	hypothetical protein	NA	Q4ZC14	Staphylococcus_virus	52.5	7.8e-29
WP_060551343.1|1007934_1008357_-	RusA family crossover junction endodeoxyribonuclease	NA	Q4ZC15	Staphylococcus_virus	96.4	6.1e-74
WP_060551344.1|1008343_1008562_-	hypothetical protein	NA	A0A1J0MFB5	Staphylococcus_phage	79.2	1.1e-26
WP_156407409.1|1008561_1009809_-	AAA family ATPase	NA	H9A0S1	Staphylococcus_phage	66.3	1.5e-157
WP_156407410.1|1009795_1010086_-	hypothetical protein	NA	I6SN23	Staphylococcus_virus	37.5	2.2e-14
WP_060551346.1|1010145_1010871_-	DnaD domain protein	NA	A0A2H4J7J5	uncultured_Caudovirales_phage	79.5	3.6e-74
WP_060551347.1|1010857_1011541_-	hypothetical protein	NA	A0A1J0MFX6	Staphylococcus_phage	90.1	2.5e-117
WP_060551348.1|1011555_1011954_-	single-stranded DNA-binding protein	NA	Q4ZC22	Staphylococcus_virus	92.4	1.0e-62
WP_060551349.1|1011953_1012616_-	single-stranded DNA-binding protein	NA	A0A2H4J7J4	uncultured_Caudovirales_phage	67.7	1.4e-77
WP_060551350.1|1012616_1013102_-	siphovirus Gp157 family protein	NA	R4IBM0	Listeria_phage	34.0	9.9e-12
WP_060551351.1|1013098_1013365_-	DUF1108 family protein	NA	NA	NA	NA	NA
WP_060551352.1|1013615_1013942_-	DUF771 domain-containing protein	NA	Q4ZC28	Staphylococcus_virus	34.3	4.0e-09
WP_060552492.1|1013954_1014152_-	hypothetical protein	NA	A0A1J0MFJ7	Staphylococcus_phage	45.3	1.2e-05
WP_060551353.1|1014276_1014519_-	hypothetical protein	NA	A0A2H4J7P2	uncultured_Caudovirales_phage	77.9	1.6e-23
WP_060551354.1|1014567_1014903_+	hypothetical protein	NA	M9NS98	Staphylococcus_phage	40.7	2.3e-15
WP_060551355.1|1014888_1015122_-	hypothetical protein	NA	A0A2H4JBS5	uncultured_Caudovirales_phage	50.0	2.1e-12
WP_060551356.1|1015163_1015478_-	hypothetical protein	NA	S4V9P0	Staphylococcus_phage	38.6	4.0e-14
WP_060551357.1|1015488_1016076_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060551359.1|1017017_1017287_-	helix-turn-helix transcriptional regulator	NA	H9A0Y0	Staphylococcus_phage	94.4	1.8e-39
WP_060551360.1|1017421_1018126_+	helix-turn-helix transcriptional regulator	NA	A0A0D4DD29	Staphylococcus_phage	54.8	3.0e-65
WP_060551361.1|1018690_1018882_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060551362.1|1018986_1019703_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	H9A0K1	Staphylococcus_phage	64.4	3.8e-76
WP_060551363.1|1019896_1020928_+|integrase	site-specific integrase	integrase	U3PJ31	Staphylococcus_phage	70.0	7.2e-137
1024549:1024564	attR	TTTTCAAGTTCTTTTG	NA	NA	NA	NA
>prophage 7
NZ_CP009623	Staphylococcus agnetis strain 908 chromosome, complete genome	2474434	1121785	1178468	2474434	portal,tRNA,terminase,head,capsid,protease,integrase,tail	Staphylococcus_phage(19.23%)	62	1162455:1162474	1176495:1176514
WP_039644777.1|1121785_1123213_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_060551441.1|1123226_1124687_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_037566951.1|1124689_1124992_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_060551442.1|1125389_1126934_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_060551443.1|1127078_1128275_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060551444.1|1128292_1130290_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.7	2.8e-113
WP_060551445.1|1130295_1132485_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	41.9	4.8e-130
WP_060551446.1|1132484_1133174_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_037566960.1|1133334_1133637_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060551447.1|1133707_1135003_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	2.5e-17
WP_082624731.1|1135267_1135444_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_037566962.1|1135433_1136003_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_060552495.1|1136069_1136891_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	49.2	2.6e-60
WP_060551448.1|1136883_1138359_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	44.9	2.6e-111
WP_060551449.1|1138516_1139587_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_060551450.1|1139631_1140426_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_060551451.1|1140510_1141620_-	pectate lyase	NA	NA	NA	NA	NA
WP_037566971.1|1141702_1142254_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	40.6	2.7e-29
WP_037566973.1|1142316_1143240_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_082624732.1|1143257_1143542_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_060551453.1|1143573_1144995_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_060551454.1|1145104_1146154_-	lactonase family protein	NA	NA	NA	NA	NA
WP_167337573.1|1146220_1146790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_086375163.1|1146914_1147088_-	hypothetical protein	NA	NA	NA	NA	NA
WP_037566976.1|1147260_1147641_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060552496.1|1147908_1148949_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_060551456.1|1149012_1149855_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_060551457.1|1149851_1150415_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_060551458.1|1150598_1151150_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_060551459.1|1151199_1151610_-	DUF2188 domain-containing protein	NA	NA	NA	NA	NA
WP_060551460.1|1151660_1153022_-	gluconate permease	NA	NA	NA	NA	NA
WP_060551461.1|1153011_1154583_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060551462.1|1154582_1155263_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_037566985.1|1155469_1156198_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_060551463.1|1156194_1157070_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.3	6.1e-28
WP_156407411.1|1157637_1157814_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060552497.1|1157973_1159263_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_060551464.1|1159346_1160162_+	radical SAM protein	NA	A0A1C9EG49	Acidianus_two-tailed_virus	33.7	3.6e-14
WP_060551465.1|1160176_1160701_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	36.0	5.7e-21
WP_060551466.1|1160816_1161257_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_060551467.1|1161693_1162203_+	DUF1440 domain-containing protein	NA	NA	NA	NA	NA
1162455:1162474	attL	TTTTACATCATACCAGGCAT	NA	NA	NA	NA
WP_060551468.1|1162665_1162899_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060551469.1|1162988_1163297_-|head	phage head closure protein	head	NA	NA	NA	NA
WP_060551470.1|1163683_1165327_-|terminase	terminase large subunit	terminase	A0A290GJW3	Caldibacillus_phage	50.8	4.7e-154
WP_015728780.1|1165319_1165640_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060551472.1|1166062_1166344_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A0S2GLH6	Bacillus_phage	29.3	8.9e-05
WP_060551473.1|1166403_1167633_-|capsid	phage major capsid protein	capsid	A0A0K2SUH4	Clostridium_phage	27.8	6.2e-18
WP_031914425.1|1167634_1168201_-|head,protease	HK97 family phage prohead protease	head,protease	A0A1B1PA08	Enterococcus_phage	35.4	1.6e-21
WP_060552498.1|1168187_1169366_-|portal	phage portal protein	portal	A0A1L2BY94	Clostridium_phage	37.7	1.6e-63
WP_060551474.1|1169479_1169812_-	hypothetical protein	NA	A0A2H4JHE6	uncultured_Caudovirales_phage	83.2	6.7e-44
WP_060551475.1|1170122_1171571_-	hypothetical protein	NA	A0A2H4JBE3	uncultured_Caudovirales_phage	37.9	1.0e-80
WP_060551476.1|1171563_1172466_-	hypothetical protein	NA	A0A1W6JQL5	Staphylococcus_phage	38.5	2.6e-50
WP_060551477.1|1172497_1172794_-	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	53.8	1.3e-17
WP_060551478.1|1172793_1173207_-	hypothetical protein	NA	A0A2H4JBF1	uncultured_Caudovirales_phage	82.8	3.0e-57
WP_060551479.1|1173208_1173412_-	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	77.6	1.0e-23
WP_060551480.1|1173408_1173714_-	helix-turn-helix domain-containing protein	NA	A0A2H4JHK0	uncultured_Caudovirales_phage	79.2	2.5e-37
WP_060551481.1|1173714_1174344_-	Bro-N domain-containing protein	NA	A0A2H4JB17	uncultured_Caudovirales_phage	70.4	6.7e-77
WP_060551482.1|1174347_1174566_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_050439619.1|1174661_1175249_+	helix-turn-helix transcriptional regulator	NA	A6XML9	Bacillus_virus	46.6	6.8e-15
WP_060551483.1|1175258_1176428_+|integrase	site-specific integrase	integrase	A0A1W6JPB2	Staphylococcus_phage	89.7	5.0e-203
WP_060551484.1|1176496_1178116_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	53.6	1.3e-156
1176495:1176514	attR	TTTTACATCATACCAGGCAT	NA	NA	NA	NA
WP_060551485.1|1178180_1178468_-	co-chaperone GroES	NA	A0A221S322	uncultured_virus	38.0	1.5e-12
>prophage 8
NZ_CP009623	Staphylococcus agnetis strain 908 chromosome, complete genome	2474434	2445954	2455417	2474434		uncultured_Caudovirales_phage(33.33%)	8	NA	NA
WP_060552439.1|2445954_2447004_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.1	3.1e-18
WP_037567821.1|2447075_2447609_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_037567823.1|2447669_2448599_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	23.9	1.2e-10
WP_060552440.1|2448918_2450430_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	34.7	1.4e-72
WP_037567828.1|2450841_2451342_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	70.8	7.7e-52
WP_060552441.1|2451355_2452240_-	DMT family transporter	NA	NA	NA	NA	NA
WP_037567834.1|2452950_2453340_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	62.8	1.5e-42
WP_060552442.1|2453311_2455417_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	86.0	0.0e+00
