assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001442815.1_ASM144281v1	NZ_CP009623	Staphylococcus agnetis strain 908 chromosome, complete genome	1	1021422-1021529	1	CRISPRCasFinder	no		cas3,DEDDh,csa3,DinG,WYL,cas2,cas1,cas9	Orphan	GCGGGTGATGGGAATCGAACCCAC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,WYL,cas2,cas1,cas9	NA|81aa|up_9|NZ_CP009623.1_1014276_1014519_-,NA|112aa|up_8|NZ_CP009623.1_1014567_1014903_+,NA|105aa|up_6|NZ_CP009623.1_1015163_1015478_-,NA|196aa|up_5|NZ_CP009623.1_1015488_1016076_-,NA|64aa|up_2|NZ_CP009623.1_1018690_1018882_+,NA	NA|81aa|up_9|NZ_CP009623.1_1014276_1014519_-	NA	NA|112aa|up_8|NZ_CP009623.1_1014567_1014903_+	NA	NA|78aa|up_7|NZ_CP009623.1_1014888_1015122_-	pfam11195, DUF2829, Protein of unknown function (DUF2829)	NA|105aa|up_6|NZ_CP009623.1_1015163_1015478_-	NA	NA|196aa|up_5|NZ_CP009623.1_1015488_1016076_-	NA	NA|90aa|up_4|NZ_CP009623.1_1017017_1017287_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|235aa|up_3|NZ_CP009623.1_1017421_1018126_+	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell	NA|64aa|up_2|NZ_CP009623.1_1018690_1018882_+	NA	NA|239aa|up_1|NZ_CP009623.1_1018986_1019703_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|344aa|up_0|NZ_CP009623.1_1019896_1020928_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|185aa|down_0|NZ_CP009623.1_1022172_1022727_-	COG3545, COG3545, Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]	NA|468aa|down_1|NZ_CP009623.1_1022809_1024213_-	PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed	NA|308aa|down_2|NZ_CP009623.1_1024226_1025150_-	PRK12435, PRK12435, ferrochelatase; Provisional	NA|348aa|down_3|NZ_CP009623.1_1025172_1026216_-	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated	NA|177aa|down_4|NZ_CP009623.1_1026412_1026943_+	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]	NA|405aa|down_5|NZ_CP009623.1_1026990_1028205_-	pfam05975, EcsB, Bacterial ABC transporter protein EcsB	NA|246aa|down_6|NZ_CP009623.1_1028201_1028939_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|143aa|down_7|NZ_CP009623.1_1029070_1029499_+	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]	NA|119aa|down_8|NZ_CP009623.1_1029578_1029935_+	COG4980, GvpP, Gas vesicle protein [General function prediction only]	NA|177aa|down_9|NZ_CP009623.1_1030034_1030565_+	PRK13777, PRK13777, HTH-type transcriptional regulator Hpr
GCF_001442815.1_ASM144281v1	NZ_CP009623	Staphylococcus agnetis strain 908 chromosome, complete genome	2	1074197-1074338	2	CRISPRCasFinder	no		cas3,DEDDh,csa3,DinG,WYL,cas2,cas1,cas9	Orphan	TTTCCGGGAAGGAAAGTGTTCTGAGAGTTGAACTACTCCCGCATA	45	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,WYL,cas2,cas1,cas9	NA|134aa|up_8|NZ_CP009623.1_1066212_1066614_-,NA|52aa|up_7|NZ_CP009623.1_1066772_1066928_-,NA	NA|462aa|up_9|NZ_CP009623.1_1064670_1066056_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|134aa|up_8|NZ_CP009623.1_1066212_1066614_-	NA	NA|52aa|up_7|NZ_CP009623.1_1066772_1066928_-	NA	NA|200aa|up_6|NZ_CP009623.1_1066946_1067546_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|390aa|up_5|NZ_CP009623.1_1067563_1068733_-	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|157aa|up_4|NZ_CP009623.1_1068747_1069218_-	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL	NA|376aa|up_3|NZ_CP009623.1_1069220_1070348_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|241aa|up_2|NZ_CP009623.1_1070520_1071243_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|up_1|NZ_CP009623.1_1071235_1072693_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|353aa|up_0|NZ_CP009623.1_1072810_1073869_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|154aa|down_0|NZ_CP009623.1_1082111_1082573_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|317aa|down_1|NZ_CP009623.1_1082657_1083608_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|153aa|down_2|NZ_CP009623.1_1083613_1084072_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|434aa|down_3|NZ_CP009623.1_1084152_1085454_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|366aa|down_4|NZ_CP009623.1_1085788_1086886_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|527aa|down_5|NZ_CP009623.1_1086990_1088571_-	COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism]	NA|579aa|down_6|NZ_CP009623.1_1088731_1090468_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|182aa|down_7|NZ_CP009623.1_1090582_1091128_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|351aa|down_8|NZ_CP009623.1_1091184_1092237_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|326aa|down_9|NZ_CP009623.1_1092325_1093303_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]
GCF_001442815.1_ASM144281v1	NZ_CP009623	Staphylococcus agnetis strain 908 chromosome, complete genome	3	1857932-1860144	3,1,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas2,cas1,cas9	cas3,DEDDh,csa3,DinG,WYL,cas2,cas1,cas9	Type II-B, or Type II-C?, Type II-B,Type II-C,Type II-A	GTTTCACTTATACCTAAAATTACAGAGTACTAAAAC,GTTTCACTTATACCTAAAATTACAGAGTACTAAAAC,GTTTCACTTATACCTAAAATTACAGAGTACTAAAAC,GTTTCACTTATACCTAAAATTACAGAGTACTAAAACT	36,36,36,37	1	1	1860078-1860107	NZ_CP009623.1_181240-181269	NA:NA:NA:NA	33,33,22,22	33	TypeII-B,orTypeII-C?,TypeII-B,TypeII-C,TypeII-A	cas3,DEDDh,csa3,DinG,WYL,cas2,cas1,cas9	NA|102aa|up_9|NZ_CP009623.1_1846766_1847072_-,NA|95aa|up_7|NZ_CP009623.1_1847552_1847837_-,NA|334aa|up_3|NZ_CP009623.1_1852219_1853221_-,NA|46aa|down_1|NZ_CP009623.1_1860857_1860995_-,NA|107aa|down_5|NZ_CP009623.1_1866762_1867083_+	NA|102aa|up_9|NZ_CP009623.1_1846766_1847072_-	NA	NA|107aa|up_8|NZ_CP009623.1_1847085_1847406_-	pfam06125, DUF961, Bacterial protein of unknown function (DUF961)	NA|95aa|up_7|NZ_CP009623.1_1847552_1847837_-	NA	NA|147aa|up_6|NZ_CP009623.1_1847930_1848371_+	smart00850, LytTR, LytTr DNA-binding domain	NA|153aa|up_5|NZ_CP009623.1_1848367_1848826_+	pfam11457, DUF3021, Protein of unknown function (DUF3021)	NA|441aa|up_4|NZ_CP009623.1_1850815_1852138_+	PRK00701, PRK00701, divalent metal cation transporter MntH	NA|334aa|up_3|NZ_CP009623.1_1852219_1853221_-	NA	cas2|103aa|up_2|NZ_CP009623.1_1853234_1853543_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|301aa|up_1|NZ_CP009623.1_1853547_1854450_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1056aa|up_0|NZ_CP009623.1_1854449_1857617_-	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1	NA|141aa|down_0|NZ_CP009623.1_1860366_1860789_+	cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18	NA|46aa|down_1|NZ_CP009623.1_1860857_1860995_-	NA	NA|554aa|down_2|NZ_CP009623.1_1861176_1862838_+	PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed	NA|530aa|down_3|NZ_CP009623.1_1863261_1864851_-	cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)	NA|342aa|down_4|NZ_CP009623.1_1865357_1866383_-	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated	NA|107aa|down_5|NZ_CP009623.1_1866762_1867083_+	NA	NA|209aa|down_6|NZ_CP009623.1_1867314_1867941_+	PRK00170, PRK00170, azoreductase; Reviewed	NA|654aa|down_7|NZ_CP009623.1_1868178_1870140_-	pfam02687, FtsX, FtsX-like permease family	NA|250aa|down_8|NZ_CP009623.1_1870141_1870891_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|286aa|down_9|NZ_CP009623.1_1870980_1871838_-	cd16948, HATPase_BceS-YxdK-YvcQ-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Bacillus subtilis BceS, YxdK, and Bacillus thuringiensis YvcQ
GCF_001442815.1_ASM144281v1	NZ_CP009623	Staphylococcus agnetis strain 908 chromosome, complete genome	4	1965588-1966001	2	CRT	no		cas3,DEDDh,csa3,DinG,WYL,cas2,cas1,cas9	Orphan	CTGAGCCGACTCCGGAACCAACACCTGANC	30	0	0	NA	NA	NA	6	6	Orphan	cas3,DEDDh,csa3,DinG,WYL,cas2,cas1,cas9	NA|555aa|up_9|NZ_CP009623.1_1948590_1950255_-,NA|506aa|up_1|NZ_CP009623.1_1959934_1961452_+,NA|54aa|down_3|NZ_CP009623.1_1969262_1969424_-,NA|167aa|down_8|NZ_CP009623.1_1974664_1975165_+	NA|555aa|up_9|NZ_CP009623.1_1948590_1950255_-	NA	NA|262aa|up_8|NZ_CP009623.1_1950652_1951438_-	pfam04507, DUF576, Csa1 family	NA|266aa|up_7|NZ_CP009623.1_1951566_1952364_-	pfam04507, DUF576, Csa1 family	NA|268aa|up_6|NZ_CP009623.1_1954115_1954919_-	pfam04507, DUF576, Csa1 family	NA|139aa|up_5|NZ_CP009623.1_1955293_1955710_-	PRK08298, PRK08298, cytidine deaminase; Validated	NA|193aa|up_4|NZ_CP009623.1_1955722_1956301_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|233aa|up_3|NZ_CP009623.1_1956883_1957582_+	PRK13036, PRK13036, superantigen-like protein; Reviewed	NA|698aa|up_2|NZ_CP009623.1_1957609_1959703_+	pfam14962, AIF-MLS, Mitochondria localization Sequence	NA|506aa|up_1|NZ_CP009623.1_1959934_1961452_+	NA	NA|239aa|up_0|NZ_CP009623.1_1961591_1962308_+	PRK13037, PRK13037, superantigen-like protein; Reviewed	NA|230aa|down_0|NZ_CP009623.1_1966469_1967159_+	PRK13037, PRK13037, superantigen-like protein; Reviewed	NA|237aa|down_1|NZ_CP009623.1_1967329_1968040_+	PRK13037, PRK13037, superantigen-like protein; Reviewed	NA|238aa|down_2|NZ_CP009623.1_1968244_1968958_+	PRK13036, PRK13036, superantigen-like protein; Reviewed	NA|54aa|down_3|NZ_CP009623.1_1969262_1969424_-	NA	NA|178aa|down_4|NZ_CP009623.1_1969449_1969983_-	pfam13353, Fer4_12, 4Fe-4S single cluster domain	NA|621aa|down_5|NZ_CP009623.1_1969969_1971832_-	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|310aa|down_6|NZ_CP009623.1_1972075_1973005_-	cd05290, LDH_3, A subgroup of L-lactate dehydrogenases	NA|297aa|down_7|NZ_CP009623.1_1973418_1974309_-	TIGR01533, Lipoprotein_E, 5'-nucleotidase, lipoprotein e(P4) family	NA|167aa|down_8|NZ_CP009623.1_1974664_1975165_+	NA	NA|743aa|down_9|NZ_CP009623.1_1975258_1977487_+	COG3664, XynB, Beta-xylosidase [Carbohydrate transport and metabolism]
