The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013137	Staphylococcus aureus strain XQ chromosome, complete genome	2803594	192224	200044	2803594		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|192224_193280_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|193279_193966_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037811.1|193940_194414_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093557.1|194755_195196_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637683.1|195475_196060_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062968.1|196158_196872_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941334.1|196875_197295_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446721.1|197296_197965_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.1	9.6e-66
WP_000604509.1|198315_198909_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	1.5e-38
WP_001217797.1|198892_200044_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 2
NZ_CP013137	Staphylococcus aureus strain XQ chromosome, complete genome	2803594	212016	226022	2803594	transposase	uncultured_Caudovirales_phage(50.0%)	12	NA	NA
WP_000663031.1|212016_213075_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.4	2.3e-21
WP_000197262.1|213232_213775_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429016.1|214379_215297_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.4	2.1e-07
WP_000193751.1|215578_217084_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_058007915.1|217433_217922_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	70.8	2.2e-51
WP_001068497.1|217941_218808_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692523.1|219608_220007_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.7	4.3e-53
WP_000855505.1|219969_222075_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|222192_223164_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_001807150.1|223298_224618_+|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_000499194.1|224859_225015_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001807234.1|225053_226022_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	79.4	9.5e-139
>prophage 3
NZ_CP013137	Staphylococcus aureus strain XQ chromosome, complete genome	2803594	408066	455715	2803594	bacteriocin,protease	Streptococcus_phage(20.0%)	46	NA	NA
WP_000896694.1|408066_408873_-|protease	protease adaptor protein YjbH	protease	NA	NA	NA	NA
WP_000214067.1|408895_409261_-	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000224616.1|409364_409958_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242107.1|410143_410491_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|410507_411143_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|411159_411969_+	NAD kinase	NA	NA	NA	NA	NA
WP_031927829.1|411965_412820_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062408.1|412840_414226_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395153.1|414235_416080_+	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_000933195.1|416357_417128_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|417323_418409_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570704.1|418750_420319_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_000889177.1|420461_421220_+	esterase family protein	NA	NA	NA	NA	NA
WP_000600387.1|421413_421923_+	YjcG family protein	NA	NA	NA	NA	NA
WP_001154217.1|422035_423226_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258650.1|423203_424379_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340127.1|424811_426296_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001798480.1|426276_426537_+	YueH family protein	NA	NA	NA	NA	NA
WP_001049957.1|426536_428099_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	2.2e-36
WP_000928413.1|428400_429204_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_072357901.1|429422_431747_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.1e-11
WP_000021872.1|431763_433122_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414179.1|433260_434772_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000876826.1|436038_436257_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668813.1|436337_437324_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|437522_437699_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033867.1|437713_438316_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_029693138.1|439341_439608_+|bacteriocin	bacteriocin transporter	bacteriocin	NA	NA	NA	NA
WP_000870824.1|439651_441616_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000668628.1|441618_441939_+	YxeA family protein	NA	NA	NA	NA	NA
WP_000571186.1|441935_442577_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	1.3e-19
WP_072357895.1|442664_442955_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000415394.1|443296_443584_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000719188.1|443589_445071_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_000766009.1|445159_445516_-	DoxX family protein	NA	NA	NA	NA	NA
WP_058007957.1|446002_446962_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020978112.1|447007_447139_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000867357.1|447202_447418_-	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	49.1	1.5e-07
WP_000620941.1|447582_448134_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000070966.1|448184_449123_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000190613.1|449304_450666_+	isochorismate synthase MenF	NA	NA	NA	NA	NA
WP_000526687.1|450652_452326_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_000150207.1|452312_453116_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000184945.1|453108_453930_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000284457.1|454166_454496_-	staphostatin B	NA	NA	NA	NA	NA
WP_042908123.1|454533_455715_-|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
>prophage 4
NZ_CP013137	Staphylococcus aureus strain XQ chromosome, complete genome	2803594	475746	484219	2803594		Synechococcus_phage(33.33%)	9	NA	NA
WP_001807178.1|475746_476229_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	43.3	3.4e-20
WP_001010403.1|476215_477340_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174052.1|477343_478048_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	2.8e-47
WP_000848351.1|478047_478311_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|478312_478984_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032747.1|478976_481166_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.8e-140
WP_000483713.1|481144_482629_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000030808.1|482621_483650_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	3.8e-61
WP_031927753.1|483652_484219_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	8.0e-29
>prophage 5
NZ_CP013137	Staphylococcus aureus strain XQ chromosome, complete genome	2803594	722324	769179	2803594	integrase,portal,capsid,protease,tRNA,transposase,terminase	Staphylococcus_phage(24.14%)	50	737447:737506	747988:749500
WP_001001521.1|722324_723869_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_000282386.1|723869_724235_+	YlbF family regulator	NA	NA	NA	NA	NA
WP_000842277.1|724261_724753_+	energy coupling factor transporter S component ThiW	NA	NA	NA	NA	NA
WP_000073332.1|725055_727674_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.7	5.0e-41
WP_000516257.1|727686_729696_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	29.5	5.3e-59
WP_001077635.1|729701_730244_+	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
WP_001103747.1|730718_731537_+	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.1	3.1e-26
WP_000417379.1|731665_733162_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_001218598.1|733319_734993_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_000136955.1|735142_736057_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001798536.1|736074_737010_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_000561359.1|737024_737258_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
737447:737506	attL	GGTTCTCCACCAAATGTGGTGGGTATATAATTTAAAGAACTATTTTAAATTACAACTTTT	NA	NA	NA	NA
WP_001807150.1|737519_738839_-|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_000448078.1|739000_739477_-	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	38.0	1.2e-22
WP_031927515.1|739588_740827_+	GTPase HflX	NA	NA	NA	NA	NA
WP_000652044.1|740845_742084_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000624945.1|742326_742695_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001126603.1|742713_744054_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_058008001.1|744193_745321_-|integrase	site-specific integrase	integrase	A0A0C5AN64	Paenibacillus_phage	31.2	1.1e-32
WP_001183751.1|745373_746069_-	Ltp family lipoprotein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	42.1	1.8e-06
WP_000554410.1|746080_746464_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001807150.1|746654_747974_+|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_000664916.1|748130_748523_-	helix-turn-helix domain-containing protein	NA	A0A2I6PE55	Staphylococcus_phage	53.6	2.7e-28
WP_001209962.1|748690_748909_+	DUF739 family protein	NA	A0A2I6PE94	Staphylococcus_phage	62.5	4.9e-19
WP_058008002.1|748935_749211_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000662665.1|749475_749646_+	hypothetical protein	NA	Q4ZDZ8	Staphylococcus_virus	89.3	1.8e-21
747988:749500	attR	AAAAGTTGTAATTTAAAATAGTTCTTTAAATTATATACCCACCACATTTGGTGGAGAACCGTTTAATTATGCATAATTTGATATATAAAAAAAGAAAGACGTAGTAATACTAATACAATGATTAGTAAAATGAGCGTCTTTCTTTATTTATCGCTATTTGAATTTGTATTTCTTTTAATTTTAATATATTCGATGAAGTTCACGATTTCTTTCATCTCTTCATCTGTGACATCATCTTTTATATGTGCTGCGATGATTTGTTCATTTTGATTTAAATGACGTTCCTCATCAGTAGGACGTTTAGGTGATACATCATAACCCAACAGCCAAGCTTCGCTAACATCTAGAACTTTAGATAAAACATAAAGTTTCTTTTGTCCAGGGCTAGTTTTACCATTTACATATTGGCTTAAATCGGTTTTGGTTATTTTAGCACCGTTATCACTTAGTAATTTAGATTTATTTATAATGTCTATTTGTTTCATTTGTTTATCTAACATTGCTTTCTTCAATCTAGAACTAAATGATTCTTTCATTTTAAGAAACCTCCAATGCAACTTATAGATAAATTATAGACAATTTTGAACAAAAGTTCAATAACTACATTCAAAAAATATGAACAAAAGTATTGCGTATTAATTTTTAATGTGATAAATTAAGTTCATAAAGTTCAAAAAAATTGAACTAAAAAGGAGGGATATTTATGCGTTTTGATTATTCAAGTTTAAATGGGAAAATAGTTGAGAAATTTGGTAGCAGATATAGCTTTGCTCATGCAATGCAATTGTCGGAAAGGAGTATATCGTTAAAACTTAATAATAAAGTTGGTTGGAAAGACAGAGAAATATTTAAAGCTGTAAACTTGTTAGAAATTAAAGAGTCAGAGATTCCAATTTATTTTTTTAACACAGAAGTTCAATAGAATTGAATTATAAAGGAGTGAACAACATGTTAAATATTCAACTGAATGAAGCAATAATTAACGAATTAGTACAAAAGAAAGTTGATGAAATTTTAAGTACCTACAAGAGGCAAGTTGCAACCGTTGATATTAAAGATTTAGTGGAGATTACAGGTTTAAGTAAAGCAACGCTAATACAAAAGATAGTCTATGAACCTGAAATTGTAGCAGTGACAAGACGAGTAGGCACAAGAGTGTTATACCTTTATCCGCAAGAATTAGATGCTTATCAAACGCTAATCAATCGAATTGGAGGACATTAACCACATGAGTAATAGTCAATTATTCAAAAACGAAACAGAACGAGCTGATTGTATGAAAAAAATTCTGAATGATCAACTGAAAATAAAACTAGAGAACGAGAAAGTTATACAAATTAAGGATTTAAAAGGTGTGAGATGAAGAAAAATAAATTAATAGGAGGAATGACAAATGTTTTGGTTAATCGTAAGTATTTTAGCAATGATTCTTTCAATCGTGTCAATAGCAATAAATTTAAATAATAAAGAATCAAGGAGGAAACTCAAATGAAAGAACCACAAAATCGTTTGA	NA	NA	NA	NA
WP_000800340.1|749634_749841_-	hypothetical protein	NA	A1BTY8	Staphylococcus_virus	75.0	4.3e-25
WP_001157026.1|749900_750584_+	phage repressor protein	NA	A9CR56	Staphylococcus_phage	86.0	8.0e-108
WP_000072840.1|750682_750844_+	DUF1270 family protein	NA	R4IH12	Staphylococcus_phage	69.8	1.1e-12
WP_042908107.1|750931_751207_+	DUF2482 family protein	NA	W5RAK4	Staphylococcus_phage	92.2	7.0e-39
WP_000786635.1|751237_751504_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	53.6	3.9e-18
WP_001002734.1|751508_752759_+	helicase SNF2	NA	A0A1B1P7L4	Bacillus_phage	57.8	1.8e-134
WP_025174483.1|752749_753067_+	hypothetical protein	NA	A0A2P0ZLA7	Lactobacillus_phage	43.2	7.1e-19
WP_000160835.1|753059_753365_+	hypothetical protein	NA	A0A1B1P7M6	Bacillus_phage	59.3	5.8e-26
WP_031927619.1|753354_755181_+	AAA family ATPase	NA	A0A1B1P7N0	Bacillus_phage	56.3	2.6e-166
WP_001250666.1|755198_755405_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000140895.1|755450_755933_+	DUF669 domain-containing protein	NA	A0A2H4J1S8	uncultured_Caudovirales_phage	37.3	2.9e-19
WP_000394569.1|758240_758630_+	hypothetical protein	NA	U3PG42	Staphylococcus_phage	51.9	4.5e-07
WP_000792984.1|758705_759011_+	MazG-like family protein	NA	A0A2H4JF73	uncultured_Caudovirales_phage	73.7	6.2e-36
WP_000231299.1|759033_759504_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000584491.1|759924_760116_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000276481.1|760147_762022_+	DNA primase family protein	NA	A0A1B1P7L5	Bacillus_phage	57.6	1.1e-210
WP_000933402.1|762326_762818_+	hypothetical protein	NA	S5MAA9	Brevibacillus_phage	30.0	7.4e-07
WP_000870118.1|763249_763540_+	HNH endonuclease	NA	D2XR61	Bacillus_phage	43.2	1.3e-19
WP_000868798.1|763858_764191_+	hypothetical protein	NA	NA	NA	NA	NA
WP_058008006.1|764174_765818_+|terminase	terminase large subunit	terminase	A0A0U4B089	Bacillus_phage	57.1	7.1e-179
WP_000523761.1|765833_766970_+|portal	phage portal protein	portal	A0A2H4JBZ5	uncultured_Caudovirales_phage	41.4	7.8e-84
WP_000394245.1|766969_767656_+|protease	Clp protease ClpP	protease	A0A2H4J8Y7	uncultured_Caudovirales_phage	49.5	1.4e-43
WP_058008008.1|767682_768852_+|capsid	phage major capsid protein	capsid	A0A0U4JIF4	Bacillus_phage	50.3	9.8e-98
WP_000406284.1|768873_769179_+	hypothetical protein	NA	A0A059T7R0	Listeria_phage	44.8	6.0e-15
>prophage 6
NZ_CP013137	Staphylococcus aureus strain XQ chromosome, complete genome	2803594	780022	786469	2803594	capsid,holin	Staphylococcus_phage(83.33%)	10	NA	NA
WP_000569801.1|780022_780433_+	hypothetical protein	NA	A0A1I9KKA6	Lactobacillus_phage	32.8	3.9e-09
WP_000665466.1|780467_780782_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000435147.1|780765_781149_+|holin	phage holin family protein	holin	H9A0W5	Staphylococcus_phage	40.0	3.3e-18
WP_058008014.1|781213_782134_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6JQL2	Staphylococcus_phage	50.2	2.0e-66
WP_001793526.1|782611_782809_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	50.0	9.9e-11
WP_001019311.1|783002_783506_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000459699.1|783518_783833_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000907423.1|783832_784261_+	protein-export chaperone SecB	NA	NA	NA	NA	NA
WP_000997672.1|784664_784874_+	helix-turn-helix domain-containing protein	NA	A0A1W6JNK0	Staphylococcus_phage	59.4	1.9e-12
WP_052724874.1|785128_786469_+|capsid	minor capsid protein	capsid	A0A1J0MFV1	Staphylococcus_phage	58.7	7.0e-140
>prophage 7
NZ_CP013137	Staphylococcus aureus strain XQ chromosome, complete genome	2803594	962931	1045400	2803594	integrase,tail,portal,capsid,protease,holin,tRNA,transposase,head,terminase	Staphylococcus_phage(80.28%)	94	973133:973150	1047169:1047186
WP_000858797.1|962931_964224_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.5e-54
WP_000525073.1|964546_967240_-	ATP-dependent DNA helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000049912.1|967263_968235_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_058008040.1|968221_969424_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	G3MAR3	Bacillus_virus	27.9	3.4e-29
WP_058008041.1|969428_970571_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000839926.1|970814_971132_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_001827022.1|971467_972148_-	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000154688.1|972219_972807_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_000005212.1|972796_973372_-	YpiB family protein	NA	G3MAV7	Bacillus_virus	27.2	2.1e-08
973133:973150	attL	ATTCATTAACTTTATATT	NA	NA	NA	NA
WP_000389525.1|973385_974630_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000245910.1|974636_975935_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000776332.1|975944_977009_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_001269935.1|977034_978201_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.3	2.0e-34
WP_001807150.1|978626_979946_+|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_058008043.1|980189_980639_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_001096479.1|980730_981690_-	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000774684.1|981691_982417_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_058008044.1|982419_982992_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_001043863.1|983422_983695_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_058008046.1|983865_984864_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_058008048.1|986413_987589_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_031844926.1|988154_988259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000644392.1|988301_988961_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_029549671.1|989037_990006_+	asparaginase	NA	NA	NA	NA	NA
WP_001174260.1|990120_991107_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_031927468.1|991300_991384_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000069302.1|991508_992792_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_000902112.1|992944_994324_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	3.8e-56
WP_058008050.1|994313_995267_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001151998.1|995374_995623_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	46.7	1.9e-14
WP_001186910.1|995728_996274_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_001033755.1|997868_998015_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031927470.1|998007_998934_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_058008054.1|999292_1000312_-	Panton-Valentine bi-component leukocidin subunit F	NA	A0A2I6PEU3	Staphylococcus_phage	100.0	1.7e-183
WP_000239544.1|1000307_1001246_-	Panton-Valentine bi-component leukocidin subunit S	NA	A0A2I6PF61	Staphylococcus_phage	100.0	1.7e-180
WP_000909207.1|1001635_1003090_-	N-acetylmuramoyl-L-alanine amidase	NA	M1TB12	Staphylococcus_phage	100.0	3.4e-289
WP_000339141.1|1003100_1003403_-|holin	phage holin	holin	A0A2I6PF56	Staphylococcus_phage	100.0	3.1e-48
WP_031887865.1|1003538_1003838_-	DUF2951 family protein	NA	A0A2I6PER2	Staphylococcus_phage	99.0	5.9e-31
WP_000916020.1|1003883_1004048_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|1004040_1004430_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000179860.1|1007819_1008110_-	hypothetical protein	NA	A0A2I6PF46	Staphylococcus_phage	100.0	2.1e-49
WP_000384462.1|1008109_1009693_-|tail	phage tail protein	tail	Q8SDP1	Staphylococcus_virus	100.0	7.1e-309
WP_001190533.1|1009701_1010526_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_058008056.1|1010525_1016726_-|tail	phage tail tape measure protein	tail	A0A2I6PF36	Staphylococcus_phage	99.7	0.0e+00
WP_000438833.1|1016739_1016898_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_000589166.1|1016948_1017290_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.5e-54
WP_000169128.1|1017347_1017803_-	Ig domain-containing protein	NA	A0A2I6PF45	Staphylococcus_phage	100.0	1.3e-77
WP_000807536.1|1017894_1018536_-|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_001023806.1|1018570_1018966_-	DUF3168 domain-containing protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
WP_000110023.1|1018966_1019368_-	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
WP_000395498.1|1019364_1019697_-	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
WP_000050973.1|1019708_1019987_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_001142734.1|1020055_1021219_-|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
WP_058008059.1|1021230_1022004_-|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	99.6	1.2e-136
WP_001100665.1|1021987_1023226_-|portal	phage portal protein	portal	A0A2I6PF26	Staphylococcus_phage	100.0	1.2e-234
WP_000778933.1|1024910_1025216_-|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
WP_000160693.1|1025343_1025658_-	HNH endonuclease	NA	A0A2I6PF37	Staphylococcus_phage	100.0	2.5e-56
WP_000528512.1|1025814_1026252_-	transcriptional regulator	NA	A0A2I6PEN3	Staphylococcus_phage	100.0	7.9e-77
WP_001793488.1|1026264_1027632_-	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	100.0	1.7e-263
WP_000665203.1|1027612_1027903_-	VRR-NUC domain-containing protein	NA	A0A2I6PEN7	Staphylococcus_phage	100.0	6.5e-51
WP_072357819.1|1028036_1028141_+	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	97.1	8.0e-12
WP_058008061.1|1028243_1030691_-	virulence-associated E family protein	NA	Q4ZCN2	Staphylococcus_virus	99.3	0.0e+00
WP_000265258.1|1030742_1030943_-	DUF1514 family protein	NA	A0A2I6PF41	Staphylococcus_phage	100.0	2.9e-26
WP_000237866.1|1031010_1031163_-	transcriptional activator RinB	NA	A0A2I6PF16	Staphylococcus_phage	98.0	5.8e-19
WP_001125015.1|1031165_1031366_-	hypothetical protein	NA	A0A2I6PF22	Staphylococcus_phage	100.0	1.8e-28
WP_058008063.1|1031340_1031529_-	DUF1381 domain-containing protein	NA	A0A2I6PF34	Staphylococcus_phage	96.8	2.0e-24
WP_033858013.1|1031545_1031719_-	hypothetical protein	NA	A0A1W6JQ45	Staphylococcus_phage	98.2	6.2e-25
WP_000700108.1|1032274_1032517_-	hypothetical protein	NA	A0A2I6PF40	Staphylococcus_phage	100.0	3.7e-36
WP_000370296.1|1032506_1032743_-	DUF1024 family protein	NA	A0A2I6PF11	Staphylococcus_phage	100.0	4.0e-35
WP_001813803.1|1032735_1032903_-	hypothetical protein	NA	A0A2I6PF20	Staphylococcus_phage	100.0	3.5e-25
WP_000178883.1|1032914_1033163_-	hypothetical protein	NA	A0A2I6PF06	Staphylococcus_phage	100.0	3.6e-42
WP_000235381.1|1033171_1033372_-	hypothetical protein	NA	A0A2I6PF32	Staphylococcus_phage	100.0	1.3e-29
WP_000111488.1|1033374_1033632_-	DUF3310 domain-containing protein	NA	A0A2I6PF10	Staphylococcus_phage	100.0	5.7e-43
WP_000113977.1|1033631_1034033_-	PVL family protein	NA	A7TWG8	Staphylococcus_phage	100.0	9.5e-69
WP_001164629.1|1034032_1034218_-	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_072357865.1|1034230_1036183_-	DNA polymerase	NA	A0A2I6PF18	Staphylococcus_phage	99.4	0.0e+00
WP_058008067.1|1036251_1036809_-	DUF2815 family protein	NA	A0A2I6PF05	Staphylococcus_phage	99.5	6.7e-97
WP_058008068.1|1036834_1038001_-	DUF2800 domain-containing protein	NA	A7TWG4	Staphylococcus_phage	98.7	2.7e-217
WP_000985984.1|1037997_1038360_-	hypothetical protein	NA	Q4ZCP8	Staphylococcus_virus	99.2	1.4e-55
WP_031773431.1|1038374_1038698_-	hypothetical protein	NA	A0A2I6PF12	Staphylococcus_phage	99.1	2.2e-52
WP_001285955.1|1038776_1038938_-	DUF1270 family protein	NA	O80077	Staphylococcus_phage	100.0	6.6e-21
WP_001124160.1|1038950_1039214_-	helix-turn-helix domain-containing protein	NA	A7TWG0	Staphylococcus_phage	100.0	5.7e-46
WP_001097552.1|1039238_1039454_-	hypothetical protein	NA	A0A2I6PF01	Staphylococcus_phage	100.0	1.9e-31
WP_001128433.1|1039508_1039874_+	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
WP_001025401.1|1039842_1040088_-	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
WP_000642492.1|1040143_1040353_+	hypothetical protein	NA	W5R9J5	Staphylococcus_phage	100.0	1.2e-30
WP_000939498.1|1040342_1040486_-	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
WP_001148544.1|1040514_1041291_-	Rha family transcriptional regulator	NA	A0A2I6PD87	Staphylococcus_phage	100.0	1.1e-140
WP_001121027.1|1041304_1041541_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PD81	Staphylococcus_phage	100.0	1.5e-37
WP_058008071.1|1041692_1042007_+	helix-turn-helix transcriptional regulator	NA	A0A0N9BAW4	Staphylococcus_phage	99.0	2.2e-52
WP_000525004.1|1042019_1042481_+	hypothetical protein	NA	A0A2K9VBR7	Staphylococcus_phage	100.0	1.2e-83
WP_000825948.1|1042498_1043083_+	hypothetical protein	NA	A0A2I6PD77	Staphylococcus_phage	100.0	1.4e-68
WP_001013104.1|1043312_1043459_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_000264748.1|1044194_1045400_+|integrase	site-specific integrase	integrase	Q8SDS6	Staphylococcus_virus	100.0	5.9e-223
1047169:1047186	attR	ATTCATTAACTTTATATT	NA	NA	NA	NA
>prophage 8
NZ_CP013137	Staphylococcus aureus strain XQ chromosome, complete genome	2803594	1106223	1114535	2803594	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1106223_1107009_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924216.1|1107134_1108025_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062177.1|1108034_1109381_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000683926.1|1109494_1110595_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	2.3e-08
WP_058008082.1|1110597_1111275_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1111405_1112512_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217266.1|1112735_1114535_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.3	1.3e-53
>prophage 9
NZ_CP013137	Staphylococcus aureus strain XQ chromosome, complete genome	2803594	1307285	1373978	2803594	tRNA,transposase,protease	Staphylococcus_phage(93.33%)	61	NA	NA
WP_001266157.1|1307285_1307930_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_000434769.1|1307944_1308736_-	phosphotransferase family protein	NA	NA	NA	NA	NA
WP_000411088.1|1309286_1310135_-	D-amino-acid transaminase	NA	NA	NA	NA	NA
WP_031927453.1|1310138_1311548_-	Mn(2+)-dependent dipeptidase Sapep	NA	NA	NA	NA	NA
WP_001051855.1|1312046_1312469_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_001217117.1|1312485_1313181_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000004344.1|1313177_1314839_-	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_031927455.1|1315245_1316514_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	99.1	2.0e-56
WP_058008115.1|1316630_1323170_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	92.5	3.3e-291
WP_000836469.1|1323495_1323807_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	96.1	4.5e-50
WP_141767132.1|1323828_1326246_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
WP_001025061.1|1326533_1327715_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|1327824_1328778_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1328774_1329338_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1329457_1329859_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266089.1|1330430_1331258_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_072357767.1|1331260_1331380_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1331491_1332493_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1332614_1333079_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159035.1|1333091_1334273_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	100.0	1.7e-227
WP_000493884.1|1334283_1334916_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	1.4e-111
WP_000077341.1|1334922_1335966_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	9.1e-196
WP_001261666.1|1336446_1337949_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	8.6e-30
WP_000221188.1|1338469_1338784_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	97.1	2.8e-52
WP_000989112.1|1338783_1340076_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	97.7	8.8e-225
WP_000163240.1|1340093_1340489_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	99.2	2.4e-72
WP_001032833.1|1340838_1341693_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1341968_1342193_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671048.1|1342391_1342862_+	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	96.8	4.8e-80
WP_001153740.1|1342974_1343418_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|1343404_1343848_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001168909.1|1344145_1344781_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1345217_1345931_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1346188_1346491_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200550.1|1346746_1347112_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	98.3	6.2e-59
WP_000623473.1|1347108_1347462_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	77.8	4.2e-20
WP_058008119.1|1347711_1348545_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	3.5e-158
WP_000366163.1|1348756_1349665_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000933822.1|1349789_1350983_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109907.1|1351354_1352947_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_072357842.1|1353241_1353988_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	97.6	1.3e-140
WP_000672018.1|1353992_1354466_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	97.5	1.0e-82
WP_000718107.1|1354531_1354789_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778513.1|1354785_1355787_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.3	8.2e-186
WP_000348367.1|1355791_1357270_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	96.7	6.9e-282
WP_072357839.1|1357428_1357884_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	1.4e-79
WP_072357764.1|1358186_1358837_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	67.6	9.5e-34
WP_000070657.1|1358918_1359914_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.8	2.9e-74
WP_000669043.1|1359988_1360615_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	93.0	2.8e-75
WP_000627546.1|1360655_1360997_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	3.0e-55
WP_000414223.1|1361097_1361670_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	7.1e-25
WP_000864137.1|1361867_1362425_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	96.2	2.0e-77
WP_058008370.1|1362610_1363051_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_103225775.1|1363058_1364625_+|transposase	IS3-like element ISSau2 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	51.8	1.7e-49
WP_000742593.1|1365038_1365488_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_058008121.1|1366123_1367314_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	34.7	8.9e-46
WP_001038741.1|1369226_1369946_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	95.8	4.0e-126
WP_001038864.1|1370071_1370791_-|protease	serine protease	protease	A0A2H4PQP7	Staphylococcus_phage	92.9	2.4e-123
WP_001039451.1|1370848_1371571_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	95.8	8.1e-127
WP_031927812.1|1371695_1372403_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	95.7	1.7e-124
WP_058008123.1|1373357_1373978_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	67.5	2.4e-63
>prophage 10
NZ_CP013137	Staphylococcus aureus strain XQ chromosome, complete genome	2803594	1486740	1569547	2803594	integrase,tail,portal,capsid,protease,holin,head,terminase	Staphylococcus_phage(89.33%)	107	1527628:1527645	1582341:1582358
WP_000827765.1|1486740_1487907_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434533.1|1487937_1488264_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669861.1|1488554_1488728_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011539.1|1488708_1489311_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_058008148.1|1489579_1490401_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	53.1	7.9e-70
WP_000284433.1|1490393_1491863_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	3.5e-108
WP_058008150.1|1492046_1493123_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177828.1|1493142_1493937_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|1494008_1494116_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323164.1|1494126_1495689_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275712.1|1495893_1496991_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	1.5e-47
WP_000149686.1|1497362_1497923_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|1497975_1498905_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001790680.1|1499097_1499271_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042908133.1|1499322_1500702_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181312.1|1500821_1501850_-	lactonase family protein	NA	NA	NA	NA	NA
WP_001284658.1|1502309_1502690_-	penicillinase repressor BlaI	NA	NA	NA	NA	NA
WP_001096369.1|1502679_1504437_-	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA	NA
WP_000612780.1|1505703_1506114_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	54.2	1.4e-30
WP_000514485.1|1506142_1506508_-	hypothetical protein	NA	NA	NA	NA	NA
WP_058008153.1|1506516_1508580_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_000706211.1|1508582_1509695_-|integrase	tyrosine-type recombinase/integrase	integrase	P97010	Streptococcus_pyogenes_phage	31.0	8.7e-11
WP_000267034.1|1510240_1510414_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188066.1|1510864_1511905_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713075.1|1511961_1512804_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033968.1|1512800_1513358_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|1513417_1513942_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|1514062_1514626_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221656.1|1514691_1515432_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763047.1|1515431_1516304_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645730.1|1516300_1516981_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991298.1|1516981_1517878_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691584.1|1517874_1518255_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681972.1|1518512_1518689_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|1518931_1519030_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068524.1|1519229_1520516_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_058008155.1|1520786_1521077_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_031927804.1|1521087_1522527_-	extracellular adherence protein Eap/Map	NA	NA	NA	NA	NA
WP_000669791.1|1523484_1523664_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	98.3	1.4e-24
WP_001791826.1|1523974_1524235_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|1524286_1524637_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000920038.1|1526131_1526623_-	staphylokinase	NA	A0A1W6JQ12	Staphylococcus_phage	99.4	4.7e-86
WP_000861038.1|1526813_1527569_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|1527580_1527835_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
1527628:1527645	attL	CACCTATACCTTTAGTAG	NA	NA	NA	NA
WP_031762631.1|1527886_1527994_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078157113.1|1528036_1528222_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	96.5	2.0e-21
WP_000340977.1|1528364_1528739_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_001040255.1|1528794_1529082_-	hypothetical protein	NA	A0A075LZJ6	Staphylococcus_phage	100.0	5.8e-44
WP_000654329.1|1529128_1529281_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	98.0	1.2e-19
WP_031927805.1|1529270_1533056_-	phage minor structural protein	NA	D2JLF9	Staphylococcus_phage	99.4	0.0e+00
WP_058008156.1|1533071_1534562_-|tail	phage tail family protein	tail	D2JLF8	Staphylococcus_phage	99.6	9.0e-298
WP_042908137.1|1534561_1539211_-|tail	phage tail tape measure protein	tail	A0A1V0E5H1	Staphylococcus_phage	98.2	0.0e+00
WP_000570353.1|1539266_1539389_-	hypothetical protein	NA	D2JLF6	Staphylococcus_phage	100.0	6.9e-15
WP_058008158.1|1539448_1539895_-	hypothetical protein	NA	O80053	Staphylococcus_phage	95.9	4.2e-73
WP_000570652.1|1539959_1540913_-	Ig-like domain-containing protein	NA	A7TWD0	Staphylococcus_phage	100.0	6.2e-175
WP_000611452.1|1540913_1541294_-	hypothetical protein	NA	D2JLF3	Staphylococcus_phage	100.0	5.8e-68
WP_000501244.1|1541290_1541668_-	HK97 gp10 family phage protein	NA	D2JLF2	Staphylococcus_phage	100.0	1.1e-61
WP_000975314.1|1541667_1542003_-|head,tail	head-tail adaptor protein	head,tail	A7TWC7	Staphylococcus_phage	100.0	1.1e-59
WP_001177483.1|1541989_1542322_-|head,tail	phage head-tail connector protein	head,tail	D2JLF0	Staphylococcus_phage	100.0	2.1e-58
WP_001252099.1|1542330_1542489_-	hypothetical protein	NA	D2JLE9	Staphylococcus_phage	100.0	3.2e-20
WP_000849950.1|1542524_1543772_-|capsid	phage major capsid protein	capsid	A7TWC4	Staphylococcus_phage	100.0	5.0e-209
WP_000032525.1|1543859_1544444_-|head,protease	HK97 family phage prohead protease	head,protease	D2JLE7	Staphylococcus_phage	100.0	9.8e-107
WP_000511067.1|1544436_1545687_-|portal	phage portal protein	portal	D2JLE6	Staphylococcus_phage	100.0	4.4e-237
WP_000133304.1|1545906_1547601_-|terminase	phage terminase large subunit	terminase	D2JLE4	Staphylococcus_phage	100.0	0.0e+00
WP_000919026.1|1547603_1548071_-|terminase	phage terminase small subunit P27 family	terminase	D2JLE3	Staphylococcus_phage	100.0	1.1e-81
WP_000817289.1|1548200_1548545_-	HNH endonuclease	NA	D2JLE2	Staphylococcus_phage	100.0	4.2e-65
WP_000406191.1|1548560_1549013_-	nucleoside triphosphate pyrophosphohydrolase family protein	NA	D2JLE1	Staphylococcus_phage	100.0	1.4e-79
WP_000282745.1|1549127_1549589_-	hypothetical protein	NA	A7TWB6	Staphylococcus_phage	100.0	1.6e-72
WP_047213617.1|1549611_1549812_-	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	98.5	3.1e-28
WP_000595240.1|1549811_1549961_-	hypothetical protein	NA	A0A1W6JPZ2	Staphylococcus_phage	98.0	4.1e-17
WP_000573772.1|1549953_1550154_-	hypothetical protein	NA	NA	NA	NA	NA
WP_058008160.1|1550150_1550357_-	DUF1381 domain-containing protein	NA	A0A2I6PDB6	Staphylococcus_phage	80.9	2.4e-23
WP_057520733.1|1550353_1550599_-	hypothetical protein	NA	A0A0H4ITX2	Staphylococcus_phage	97.5	3.2e-35
WP_000185680.1|1550635_1551172_-	dUTP diphosphatase	NA	A0A1P8L6E0	Staphylococcus_phage	100.0	2.1e-95
WP_000714406.1|1551164_1551335_-	hypothetical protein	NA	A0A1W6JQ22	Staphylococcus_phage	98.2	9.7e-23
WP_001065063.1|1551321_1551576_-	DUF1024 family protein	NA	B5WZN0	Staphylococcus_phage	100.0	3.8e-39
WP_058008163.1|1551568_1551832_-	hypothetical protein	NA	A0A2I6PDB3	Staphylococcus_phage	89.7	2.4e-36
WP_031927916.1|1551828_1552230_-	hypothetical protein	NA	A0A0H4IPW3	Staphylococcus_phage	79.9	2.1e-55
WP_000131379.1|1552244_1552487_-	hypothetical protein	NA	A0A0F6N3E1	Staphylococcus_phage	98.8	1.9e-40
WP_047213626.1|1552490_1552859_-	phage protein	NA	I1W656	Staphylococcus_phage	99.2	3.1e-50
WP_001662398.1|1552871_1553276_-	RusA family crossover junction endodeoxyribonuclease	NA	O80087	Staphylococcus_phage	100.0	8.4e-73
WP_000338528.1|1553284_1553503_-	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_058008165.1|1553509_1554427_-	DnaD domain protein	NA	S4V6D4	Staphylococcus_phage	95.1	4.2e-136
WP_000934769.1|1554456_1554927_-	single-stranded DNA-binding protein	NA	A0A0E3T9H6	Staphylococcus_phage	100.0	5.7e-81
WP_076692545.1|1554927_1555530_-	MBL fold metallo-hydrolase	NA	S4SWA4	Staphylococcus_phage	100.0	8.9e-87
WP_000138475.1|1555625_1556546_-	recombinase RecT	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_047213630.1|1556547_1558503_-	AAA family ATPase	NA	R9QT82	Staphylococcus_phage	99.8	0.0e+00
WP_001205732.1|1558499_1558763_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291489.1|1558771_1559032_-	DUF1108 family protein	NA	A0A1W6JQ03	Staphylococcus_phage	100.0	7.6e-43
WP_000066020.1|1559123_1559285_-	DUF1270 domain-containing protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
WP_001120935.1|1559281_1559602_-	DUF771 domain-containing protein	NA	Q4ZDR7	Staphylococcus_virus	100.0	1.5e-56
WP_047213632.1|1559660_1559888_+	hypothetical protein	NA	A7TWL9	Staphylococcus_phage	98.7	1.1e-37
WP_000389906.1|1559889_1560081_-	hypothetical protein	NA	A7TWL8	Staphylococcus_phage	100.0	2.8e-26
WP_000768245.1|1560130_1560487_+	DUF2513 domain-containing protein	NA	A0A1P8L6H1	Staphylococcus_phage	100.0	6.1e-59
WP_001148853.1|1560481_1560676_-	hypothetical protein	NA	Q4ZDS1	Staphylococcus_virus	98.4	2.9e-23
WP_047213634.1|1560691_1561441_-	phage antirepressor KilAC domain-containing protein	NA	Q8SDM9	Staphylococcus_phage	99.2	1.7e-135
WP_047213263.1|1561497_1561710_+	hypothetical protein	NA	A0A2H4JBA9	uncultured_Caudovirales_phage	55.1	1.6e-14
WP_000435357.1|1561816_1562260_-	hypothetical protein	NA	A7TWF2	Staphylococcus_phage	100.0	8.9e-76
WP_000213811.1|1562307_1562520_-	helix-turn-helix transcriptional regulator	NA	A7TWF1	Staphylococcus_phage	100.0	1.6e-30
WP_001566740.1|1562671_1563403_+	helix-turn-helix transcriptional regulator	NA	A0A075LYE4	Staphylococcus_phage	75.8	9.8e-88
WP_178136400.1|1563414_1563579_+	hypothetical protein	NA	A0A2I6PDR9	Staphylococcus_phage	100.0	8.7e-21
WP_001089804.1|1563556_1563742_+	hypothetical protein	NA	A0A2I6PDS4	Staphylococcus_phage	100.0	2.3e-25
WP_000705240.1|1563941_1564124_+	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
WP_001013104.1|1564159_1564306_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_058008167.1|1565023_1566049_+|integrase	site-specific integrase	integrase	A0A0H3U2W9	Staphylococcus_phage	99.1	1.8e-175
WP_000595397.1|1567453_1568470_-	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.2	8.7e-26
WP_000791409.1|1568491_1569547_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.6	1.9e-36
1582341:1582358	attR	CTACTAAAGGTATAGGTG	NA	NA	NA	NA
>prophage 11
NZ_CP013137	Staphylococcus aureus strain XQ chromosome, complete genome	2803594	2654858	2670458	2803594	integrase,coat,terminase	Staphylococcus_phage(95.24%)	24	2656533:2656547	2659068:2659082
WP_000934799.1|2654858_2655362_+	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
WP_000897044.1|2655413_2655656_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_000281092.1|2655987_2656614_-	hypothetical protein	NA	NA	NA	NA	NA
2656533:2656547	attL	AAAATGAATATGAAG	NA	NA	NA	NA
WP_000270126.1|2657300_2658515_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	96.8	8.0e-220
WP_000142630.1|2658813_2659548_-	helix-turn-helix transcriptional regulator	NA	Q4ZE79	Staphylococcus_phage	98.4	8.5e-132
2659068:2659082	attR	CTTCATATTCATTTT	NA	NA	NA	NA
WP_001063624.1|2659697_2659910_+	helix-turn-helix transcriptional regulator	NA	Q4ZE78	Staphylococcus_phage	98.6	3.4e-33
WP_001138298.1|2659910_2660183_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	100.0	3.4e-46
WP_000784887.1|2660194_2660341_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058495.1|2660333_2660543_+	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	94.2	2.9e-29
WP_000383747.1|2660545_2660872_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	88.0	3.7e-47
WP_058008337.1|2660936_2661806_+	primase C-terminal domain-containing protein	NA	Q4ZE74	Staphylococcus_phage	95.8	1.2e-164
WP_000447469.1|2661819_2663529_+	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	92.8	1.4e-302
WP_058008339.1|2663838_2664219_+	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	96.0	4.9e-67
WP_001047698.1|2664215_2664857_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	93.0	7.2e-111
WP_001190614.1|2665306_2665648_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	100.0	2.9e-58
WP_000214172.1|2665678_2666332_+	hypothetical protein	NA	Q4ZE82	Staphylococcus_phage	99.5	2.6e-116
WP_000771368.1|2666384_2666912_+|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	97.1	3.5e-87
WP_000358778.1|2666914_2667256_+	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	100.0	1.7e-58
WP_058008341.1|2667252_2667822_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.4	6.0e-101
WP_000278086.1|2668128_2668929_+	staphylococcal enterotoxin type B	NA	A0A097PAT7	Streptococcus_pyogenes_phage	46.5	1.9e-52
WP_001035615.1|2669006_2669564_-	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	71.6	3.6e-66
WP_001788502.1|2669937_2670090_+	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	3.1e-20
WP_000139423.1|2670160_2670271_+	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_001286805.1|2670272_2670458_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	100.0	2.7e-26
