The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011964	Bifidobacterium longum subsp. longum strain NCIMB8809 chromosome, complete genome	2340989	785743	848724	2340989	protease,transposase	Tupanvirus(12.5%)	46	NA	NA
WP_143247279.1|785743_787055_+|transposase	IS3 family transposase	transposase	A0A0N7C1X7	Escherichia_phage	39.8	6.4e-37
WP_058062549.1|787073_788270_+	MvaI/BcnI restriction endonuclease family protein	NA	NA	NA	NA	NA
WP_058062550.1|788266_789817_-	DNA cytosine methyltransferase	NA	K4HZD0	Acidithiobacillus_phage	27.9	1.2e-37
WP_058062551.1|789872_790058_-	hypothetical protein	NA	NA	NA	NA	NA
WP_143247278.1|790166_791057_+	hypothetical protein	NA	NA	NA	NA	NA
WP_058062552.1|791224_792799_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_058062553.1|792805_793561_+	ATP-binding protein	NA	A0A0D4DBZ2	Acinetobacter_phage	22.5	1.7e-05
WP_058062554.1|794225_797297_-	DUF4981 domain-containing protein	NA	L0N6M2	Herpes_simplex_virus	30.9	1.4e-122
WP_007053460.1|797661_799149_+	MFS transporter	NA	NA	NA	NA	NA
WP_077322452.1|799407_799548_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007052026.1|800787_801960_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012471929.1|801986_803324_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_007052028.1|803494_804724_-	acetate kinase	NA	NA	NA	NA	NA
WP_007052029.1|804858_806529_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_007052030.1|807182_807881_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_007052031.1|808013_808427_-	ribosome silencing factor	NA	NA	NA	NA	NA
WP_008782812.1|808430_809813_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L821	Tupanvirus	33.1	3.1e-26
WP_008782813.1|810094_811117_-	ribose-phosphate diphosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.2	9.6e-41
WP_058062555.1|811202_813077_-	acetyltransferase	NA	A0A166XZF2	Gordonia_phage	26.6	1.3e-14
WP_007052035.1|813252_814734_-	DUF1846 domain-containing protein	NA	NA	NA	NA	NA
WP_007053450.1|814980_815364_-	DUF600 family protein	NA	NA	NA	NA	NA
WP_058062556.1|815363_816641_-	endonuclease	NA	NA	NA	NA	NA
WP_008782817.1|816641_817295_-	hypothetical protein	NA	NA	NA	NA	NA
WP_077382859.1|817679_818771_+	MFS transporter	NA	NA	NA	NA	NA
WP_158336220.1|818890_819910_-|transposase	IS66 family transposase	transposase	S5VLC8	Leptospira_phage	36.2	6.3e-08
WP_129558950.1|820000_821548_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_007056226.1|821544_822306_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	38.8	4.8e-37
WP_023658196.1|823082_823478_-	arsenate reductase ArsC	NA	NA	NA	NA	NA
WP_007057943.1|824347_825910_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	26.1	3.4e-13
WP_007052042.1|826355_828833_+	phosphoketolase	NA	NA	NA	NA	NA
WP_007052043.1|828954_829776_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_007052045.1|829977_830958_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_015512286.1|831091_832297_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.2	5.3e-30
WP_007052047.1|832293_832980_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_007052048.1|833068_834220_+	amidohydrolase	NA	NA	NA	NA	NA
WP_058062558.1|834568_836266_+	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.2	2.3e-87
WP_007055377.1|836317_836542_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007052051.1|836807_839183_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	38.7	9.1e-151
WP_007052052.1|839292_840174_+	pyruvate formate lyase-activating protein	NA	NA	NA	NA	NA
WP_007052053.1|840236_840875_+	DUF3000 family protein	NA	NA	NA	NA	NA
WP_007052054.1|840871_842173_+	hypothetical protein	NA	U3REX6	uncultured_virus	24.8	4.4e-06
WP_007052055.1|842227_843607_+	trigger factor	NA	NA	NA	NA	NA
WP_007057022.1|843790_845257_+	chloride channel protein	NA	NA	NA	NA	NA
WP_007052057.1|845368_845749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007052059.1|846482_847184_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	43.4	5.2e-38
WP_007052060.1|847305_848724_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	48.7	8.5e-112
>prophage 2
NZ_CP011964	Bifidobacterium longum subsp. longum strain NCIMB8809 chromosome, complete genome	2340989	1241251	1296409	2340989	integrase,tRNA,transposase	Gordonia_phage(16.67%)	43	1260782:1260797	1299887:1299902
WP_032746984.1|1241251_1242187_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0K0MWE8	Gordonia_phage	34.1	9.1e-30
WP_007054363.1|1242853_1243897_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	39.3	7.8e-54
WP_008783284.1|1243893_1244448_-	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_007054365.1|1244464_1245346_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
WP_007052688.1|1245407_1245974_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_007054366.1|1245994_1246966_-	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_058062639.1|1247032_1248379_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_058062640.1|1248518_1250273_-	ComEC/Rec2 family competence protein	NA	NA	NA	NA	NA
WP_007054369.1|1250269_1250767_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011068058.1|1251209_1254173_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	42.0	8.6e-199
WP_010080747.1|1254215_1255061_-	glutamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_007054371.1|1255156_1256107_-	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_011068056.1|1256221_1257067_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_022527663.1|1257135_1258431_+	N6-adenine-specific methylase	NA	NA	NA	NA	NA
WP_007052678.1|1258458_1258863_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_007052677.1|1259141_1260077_+	DMT family transporter	NA	NA	NA	NA	NA
WP_007052675.1|1260460_1261429_+	hypothetical protein	NA	NA	NA	NA	NA
1260782:1260797	attL	GAAGTCGTGTCCAATC	NA	NA	NA	NA
WP_032735440.1|1261501_1262041_+	peptidylprolyl isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	42.3	1.2e-21
WP_058062641.1|1262137_1262653_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_007054866.1|1263314_1264370_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0U4IH55	Gordonia_phage	26.7	1.0e-05
WP_058062642.1|1264366_1265332_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_007053137.1|1265328_1266531_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_012471819.1|1267097_1269422_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1X9SH80	Bradyrhizobium_phage	36.8	8.4e-08
WP_007055963.1|1269555_1270032_-	dUTP diphosphatase	NA	A0A2L1IVN2	Streptomyces_phage	57.7	1.5e-33
WP_007052669.1|1270031_1270325_-	DUF4193 domain-containing protein	NA	NA	NA	NA	NA
WP_007056777.1|1270483_1271575_+	DUF3071 domain-containing protein	NA	NA	NA	NA	NA
WP_007054496.1|1271584_1272853_-	nucleotide pyrophosphatase	NA	NA	NA	NA	NA
WP_007052666.1|1273103_1275833_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	30.6	2.7e-82
WP_007054494.1|1275977_1276766_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_058062643.1|1276776_1281510_-	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
WP_007056771.1|1281525_1282518_-	ribokinase	NA	NA	NA	NA	NA
WP_007056778.1|1282561_1283788_-	MFS transporter	NA	NA	NA	NA	NA
WP_013410790.1|1284147_1286466_-	type IIA DNA topoisomerase subunit B	NA	G3M9Z3	Bacillus_virus	35.2	4.6e-107
WP_058062644.1|1286523_1287948_-	RNA polymerase sigma factor	NA	A0A2I7SAT0	Vibrio_phage	39.8	1.2e-41
WP_007052659.1|1288150_1288813_-	DUF4192 family protein	NA	NA	NA	NA	NA
WP_058062645.1|1289019_1290102_+	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_058062646.1|1290245_1292519_+	serine/threonine-protein kinase	NA	A0A2P1EMR8	Moumouvirus	26.6	2.8e-16
WP_007058769.1|1292570_1293275_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_013410786.1|1293335_1294031_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007054484.1|1294184_1294373_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011068039.1|1294419_1295466_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	34.7	7.1e-39
WP_007055164.1|1295850_1296030_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010080769.1|1296055_1296409_+|transposase	transposase	transposase	NA	NA	NA	NA
1299887:1299902	attR	GAAGTCGTGTCCAATC	NA	NA	NA	NA
>prophage 3
NZ_CP011964	Bifidobacterium longum subsp. longum strain NCIMB8809 chromosome, complete genome	2340989	1990882	2023057	2340989	portal,capsid,transposase,integrase,protease,tail,head	Propionibacterium_phage(27.78%)	34	2002372:2002390	2028047:2028065
WP_117761349.1|1990882_1992430_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_007056226.1|1992426_1993188_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	38.8	4.8e-37
WP_007052992.1|1994232_1994919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015512043.1|1996195_1997440_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_011068724.1|1997636_2000021_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_081040108.1|2000853_2001162_-	hypothetical protein	NA	A0A1P8BL51	Lactococcus_phage	39.7	7.4e-05
WP_080669967.1|2001216_2002494_-	LysM peptidoglycan-binding domain-containing protein	NA	Q9ZXB4	Leuconostoc_phage	24.9	3.6e-13
2002372:2002390	attL	GCTGTCGGCGAGCGCGGTG	NA	NA	NA	NA
WP_023658593.1|2002541_2002853_-	hypothetical protein	NA	I3NL84	Bifidobacterium_phage	59.4	6.5e-17
WP_080749409.1|2002935_2003805_+|integrase	site-specific integrase	integrase	A0A0M9JJ77	Lactobacillus_phage	26.4	1.9e-05
WP_058062747.1|2003838_2004132_+	hypothetical protein	NA	NA	NA	NA	NA
WP_058062748.1|2004147_2004429_+	hypothetical protein	NA	NA	NA	NA	NA
WP_058062749.1|2004498_2004762_+	hypothetical protein	NA	NA	NA	NA	NA
WP_058062750.1|2004813_2005053_-	hypothetical protein	NA	NA	NA	NA	NA
WP_058062751.1|2005131_2006040_-	hypothetical protein	NA	A0A1C9LZA8	Arthrobacter_phage	33.6	1.6e-10
WP_023658600.1|2006036_2006717_-|tail	tail fiber domain-containing protein	tail	NA	NA	NA	NA
WP_058062752.1|2006709_2007825_-	hypothetical protein	NA	A0A0U4B2C6	Arthrobacter_phage	29.1	1.5e-26
WP_058062753.1|2007841_2008717_-	hypothetical protein	NA	NA	NA	NA	NA
WP_058062754.1|2008716_2012541_-	tape measure protein	NA	A6N208	Microbacterium_phage	59.2	3.3e-70
WP_023658604.1|2012935_2013313_-	hypothetical protein	NA	A0A1P8VV87	Rathayibacter_phage	36.1	2.8e-14
WP_023658605.1|2013401_2014244_-	hypothetical protein	NA	A0A1D8ETI9	Propionibacterium_phage	64.4	5.8e-68
WP_058062755.1|2014274_2014700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023658607.1|2014696_2014987_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023658608.1|2014986_2015382_-	hypothetical protein	NA	A0A1D8ETC4	Propionibacterium_phage	38.2	5.6e-13
WP_023658609.1|2015378_2015900_-	hypothetical protein	NA	A0A1D8ETD3	Propionibacterium_phage	52.9	6.0e-47
WP_023658610.1|2015919_2016270_-	hypothetical protein	NA	NA	NA	NA	NA
WP_058062756.1|2016270_2016492_-	hypothetical protein	NA	NA	NA	NA	NA
WP_058062757.1|2016491_2017739_-|capsid	phage major capsid protein	capsid	M4WNS1	Mycobacterium_phage	28.0	3.4e-32
WP_058062758.1|2017764_2018388_-|head,protease	HK97 family phage prohead protease	head,protease	Q9MBK0	Corynebacterium_phage	42.3	2.0e-33
WP_023658614.1|2018384_2019665_-|portal	phage portal protein	portal	A0A222ZFM5	Arthrobacter_phage	32.0	8.1e-37
WP_023658615.1|2019664_2019886_-	hypothetical protein	NA	NA	NA	NA	NA
WP_058062759.1|2019900_2021478_-	hypothetical protein	NA	A0A1D8ET78	Propionibacterium_phage	58.0	1.5e-178
WP_129219756.1|2021500_2022112_-	hypothetical protein	NA	A0A2R4A176	Microbacterium_phage	50.7	4.2e-07
WP_023658618.1|2022364_2022715_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023658619.1|2022742_2023057_-	hypothetical protein	NA	A0A1D8ETB0	Propionibacterium_phage	52.8	2.0e-29
2028047:2028065	attR	GCTGTCGGCGAGCGCGGTG	NA	NA	NA	NA
>prophage 4
NZ_CP011964	Bifidobacterium longum subsp. longum strain NCIMB8809 chromosome, complete genome	2340989	2304176	2314116	2340989		Mycobacterium_phage(33.33%)	9	NA	NA
WP_010081208.1|2304176_2305304_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	33.8	2.9e-22
WP_058062816.1|2305662_2306838_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_007051806.1|2306901_2307894_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	77.9	1.2e-141
WP_007054636.1|2308204_2310400_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	47.3	2.1e-186
WP_007056564.1|2310515_2310974_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	R4JF54	Bacillus_phage	31.7	8.8e-10
WP_007051803.1|2310970_2311237_-	glutaredoxin family protein	NA	V5R9U9	Mycobacterium_phage	41.8	3.9e-10
WP_007054640.1|2311824_2312475_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_058062818.1|2312458_2313154_-	DUF3990 domain-containing protein	NA	NA	NA	NA	NA
WP_022527161.1|2313348_2314116_+	ion transport family protein	NA	A0A2I7SA68	Vibrio_phage	27.2	6.4e-05
