assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001446275.1_ASM144627v1	NZ_CP011965	Bifidobacterium longum subsp. longum strain CCUG30698 chromosome, complete genome	1	167095-167463	1	CRISPRCasFinder	no		csa3,cas3,Cas14u_CAS-V,c2c9_V-U4,DEDDh,cas14j,WYL	Orphan	CGATGACCCGTGGAATCAACCGCA	24	0	0	NA	NA	NA	6	6	Orphan	csa3,cas3,Cas14u_CAS-V,c2c9_V-U4,DEDDh,cas14j,WYL	NA|201aa|up_5|NZ_CP011965.1_160645_161248_+,NA|99aa|down_2|NZ_CP011965.1_169833_170130_+,NA|207aa|down_7|NZ_CP011965.1_174731_175352_+	NA|242aa|up_9|NZ_CP011965.1_157020_157746_+	PRK10847, PRK10847, DedA family protein	NA|317aa|up_8|NZ_CP011965.1_157968_158919_+	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|356aa|up_7|NZ_CP011965.1_158925_159993_+	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|219aa|up_6|NZ_CP011965.1_159992_160649_+	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|201aa|up_5|NZ_CP011965.1_160645_161248_+	NA	NA|96aa|up_4|NZ_CP011965.1_161532_161820_+	pfam14029, DUF4244, Protein of unknown function (DUF4244)	NA|126aa|up_3|NZ_CP011965.1_161825_162203_+	pfam07811, TadE, TadE-like protein	NA|126aa|up_2|NZ_CP011965.1_162252_162630_+	TIGR03816, tadE_like_DECH, helicase/secretion neighborhood TadE-like protein	NA|377aa|up_1|NZ_CP011965.1_162678_163809_+	PRK11914, PRK11914, diacylglycerol kinase; Reviewed	NA|200aa|up_0|NZ_CP011965.1_164006_164606_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|201aa|down_0|NZ_CP011965.1_167738_168341_+	PRK00076, recR, recombination protein RecR; Reviewed	NA|378aa|down_1|NZ_CP011965.1_168337_169471_-	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|99aa|down_2|NZ_CP011965.1_169833_170130_+	NA	NA|428aa|down_3|NZ_CP011965.1_170357_171641_+	pfam13635, DUF4143, Domain of unknown function (DUF4143)	NA|255aa|down_4|NZ_CP011965.1_172001_172766_+	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|189aa|down_5|NZ_CP011965.1_172821_173388_+	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|365aa|down_6|NZ_CP011965.1_173469_174564_-	PRK08664, PRK08664, aspartate-semialdehyde dehydrogenase; Reviewed	NA|207aa|down_7|NZ_CP011965.1_174731_175352_+	NA	NA|489aa|down_8|NZ_CP011965.1_175686_177153_+	cd07383, MPP_Dcr2, Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain	NA|639aa|down_9|NZ_CP011965.1_177644_179561_+	PRK03739, PRK03739, 2-isopropylmalate synthase; Validated
GCF_001446275.1_ASM144627v1	NZ_CP011965	Bifidobacterium longum subsp. longum strain CCUG30698 chromosome, complete genome	2	284965-285050	2	CRISPRCasFinder	no		csa3,cas3,Cas14u_CAS-V,c2c9_V-U4,DEDDh,cas14j,WYL	Orphan	GACAGCTCCCGCCAGCGGGAGCACTT	26	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,Cas14u_CAS-V,c2c9_V-U4,DEDDh,cas14j,WYL	NA,NA|695aa|down_6|NZ_CP011965.1_293506_295591_+	NA|560aa|up_9|NZ_CP011965.1_272507_274187_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|245aa|up_8|NZ_CP011965.1_274420_275155_+	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]	NA|889aa|up_7|NZ_CP011965.1_275238_277905_-	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|94aa|up_6|NZ_CP011965.1_278016_278298_+	COG1937, COG1937, Uncharacterized protein conserved in bacteria [Function unknown]	NA|475aa|up_5|NZ_CP011965.1_278340_279765_+	pfam02646, RmuC, RmuC family	NA|210aa|up_4|NZ_CP011965.1_279761_280391_+	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|283aa|up_3|NZ_CP011965.1_280484_281333_+	cd18096, SpoU-like, SAM-dependent rRNA or tRNA methylase related to SpoU	NA|100aa|up_2|NZ_CP011965.1_281499_281799_+	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|514aa|up_1|NZ_CP011965.1_281802_283344_+	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|500aa|up_0|NZ_CP011965.1_283369_284869_+	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|355aa|down_0|NZ_CP011965.1_285164_286229_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|105aa|down_1|NZ_CP011965.1_286239_286554_+	pfam10611, DUF2469, Protein of unknown function (DUF2469)	NA|618aa|down_2|NZ_CP011965.1_286727_288581_+	cd07061, HP_HAP_like, Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction	NA|538aa|down_3|NZ_CP011965.1_288799_290413_+	PRK07208, PRK07208, hypothetical protein; Provisional	NA|690aa|down_4|NZ_CP011965.1_290618_292688_+	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|130aa|down_5|NZ_CP011965.1_292995_293385_+	PRK09239, PRK09239, chorismate mutase; Provisional	NA|695aa|down_6|NZ_CP011965.1_293506_295591_+	NA	NA|912aa|down_7|NZ_CP011965.1_295702_298438_-	NF000540, alt_ValS, valine--tRNA ligase	NA|509aa|down_8|NZ_CP011965.1_298579_300106_-	cd08494, PBP2_NikA_DppA_OppA_like_6, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|229aa|down_9|NZ_CP011965.1_300167_300854_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
GCF_001446275.1_ASM144627v1	NZ_CP011965	Bifidobacterium longum subsp. longum strain CCUG30698 chromosome, complete genome	3	1565518-1565598	3	CRISPRCasFinder	no		csa3,cas3,Cas14u_CAS-V,c2c9_V-U4,DEDDh,cas14j,WYL	Orphan	CGCACAGTGAAACCGTCTCATAT	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,Cas14u_CAS-V,c2c9_V-U4,DEDDh,cas14j,WYL	NA|107aa|up_5|NZ_CP011965.1_1555865_1556186_-,NA|284aa|down_0|NZ_CP011965.1_1566498_1567350_+	NA|170aa|up_9|NZ_CP011965.1_1551742_1552252_+	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|353aa|up_8|NZ_CP011965.1_1552291_1553350_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|319aa|up_7|NZ_CP011965.1_1553574_1554531_+	cd09022, Aldose_epim_Ec_YihR, Aldose 1-epimerase, similar to Escherichia coli YihR	NA|315aa|up_6|NZ_CP011965.1_1554655_1555600_+	cd09022, Aldose_epim_Ec_YihR, Aldose 1-epimerase, similar to Escherichia coli YihR	NA|107aa|up_5|NZ_CP011965.1_1555865_1556186_-	NA	NA|251aa|up_4|NZ_CP011965.1_1556185_1556938_-	PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional	NA|518aa|up_3|NZ_CP011965.1_1557112_1558666_+	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional	NA|332aa|up_2|NZ_CP011965.1_1558787_1559783_+	pfam13480, Acetyltransf_6, Acetyltransferase (GNAT) domain	NA|1226aa|up_1|NZ_CP011965.1_1559901_1563579_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|535aa|up_0|NZ_CP011965.1_1563639_1565244_-	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]	NA|284aa|down_0|NZ_CP011965.1_1566498_1567350_+	NA	NA|532aa|down_1|NZ_CP011965.1_1567653_1569249_+	cd01087, Prolidase, Prolidase	NA|174aa|down_2|NZ_CP011965.1_1569297_1569819_+	cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|570aa|down_3|NZ_CP011965.1_1569868_1571578_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|390aa|down_4|NZ_CP011965.1_1571581_1572751_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|364aa|down_5|NZ_CP011965.1_1572752_1573844_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|545aa|down_6|NZ_CP011965.1_1574011_1575646_-	cd08519, PBP2_NikA_DppA_OppA_like_20, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|369aa|down_7|NZ_CP011965.1_1575894_1577001_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|428aa|down_8|NZ_CP011965.1_1577123_1578407_-	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|271aa|down_9|NZ_CP011965.1_1578462_1579275_-	PRK00443, nagB, glucosamine-6-phosphate deaminase; Provisional
GCF_001446275.1_ASM144627v1	NZ_CP011965	Bifidobacterium longum subsp. longum strain CCUG30698 chromosome, complete genome	4	1833004-1833078	4	CRISPRCasFinder	no		csa3,cas3,Cas14u_CAS-V,c2c9_V-U4,DEDDh,cas14j,WYL	Orphan	TTCTGCTGTCCCGGTTCGTCATTT	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,Cas14u_CAS-V,c2c9_V-U4,DEDDh,cas14j,WYL	NA,NA|59aa|down_0|NZ_CP011965.1_1833920_1834097_-	NA|442aa|up_9|NZ_CP011965.1_1819299_1820625_+	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|418aa|up_8|NZ_CP011965.1_1820673_1821927_-	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]	NA|311aa|up_7|NZ_CP011965.1_1822020_1822953_-	cd08423, PBP2_LTTR_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|422aa|up_6|NZ_CP011965.1_1823039_1824305_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|222aa|up_5|NZ_CP011965.1_1824313_1824979_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|621aa|up_4|NZ_CP011965.1_1825192_1827055_+	COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	NA|531aa|up_3|NZ_CP011965.1_1827057_1828650_+	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase	NA|439aa|up_2|NZ_CP011965.1_1828810_1830127_+	PRK06349, PRK06349, homoserine dehydrogenase; Provisional	NA|371aa|up_1|NZ_CP011965.1_1830221_1831334_+	PRK01212, PRK01212, homoserine kinase; Provisional	NA|485aa|up_0|NZ_CP011965.1_1831470_1832925_+	PRK00148, PRK00148, Maf-like protein; Reviewed	NA|59aa|down_0|NZ_CP011965.1_1833920_1834097_-	NA	NA|365aa|down_1|NZ_CP011965.1_1834546_1835641_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|483aa|down_2|NZ_CP011965.1_1835637_1837086_+	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|315aa|down_3|NZ_CP011965.1_1837261_1838206_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|402aa|down_4|NZ_CP011965.1_1838312_1839518_+	cd05647, M20_DapE_actinobac, M20 Peptidase actinobacterial DapE encoded N-succinyl-L,L-diaminopimelic acid desuccinylase	NA|1023aa|down_5|NZ_CP011965.1_1839831_1842900_+	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family	NA|103aa|down_6|NZ_CP011965.1_1843051_1843360_+	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|83aa|down_7|NZ_CP011965.1_1843382_1843631_+	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|564aa|down_8|NZ_CP011965.1_1843699_1845391_+	PRK12296, obgE, GTPase CgtA; Reviewed	NA|378aa|down_9|NZ_CP011965.1_1845391_1846525_+	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional
GCF_001446275.1_ASM144627v1	NZ_CP011965	Bifidobacterium longum subsp. longum strain CCUG30698 chromosome, complete genome	5	1966538-1966623	5	CRISPRCasFinder	no		csa3,cas3,Cas14u_CAS-V,c2c9_V-U4,DEDDh,cas14j,WYL	Orphan	CTCCGCGCCCGCACGCTCAGGGC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,Cas14u_CAS-V,c2c9_V-U4,DEDDh,cas14j,WYL	NA|243aa|up_1|NZ_CP011965.1_1963729_1964458_-,NA|211aa|down_4|NZ_CP011965.1_1973621_1974254_+,NA|30aa|down_5|NZ_CP011965.1_1974445_1974535_+	NA|133aa|up_9|NZ_CP011965.1_1953216_1953615_+	PRK05309, PRK05309, 30S ribosomal protein S11; Validated	NA|332aa|up_8|NZ_CP011965.1_1953695_1954691_+	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|181aa|up_7|NZ_CP011965.1_1954790_1955333_+	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|304aa|up_6|NZ_CP011965.1_1955414_1956326_-	cd02570, PseudoU_synth_EcTruA, Eukaryotic and bacterial pseudouridine synthases similar to E	NA|727aa|up_5|NZ_CP011965.1_1956547_1958728_+	pfam14403, CP_ATPgrasp_2, Circularly permuted ATP-grasp type 2	NA|267aa|up_4|NZ_CP011965.1_1958934_1959735_+	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]	NA|523aa|up_3|NZ_CP011965.1_1960544_1962113_+	COG3534, AbfA, Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]	NA|348aa|up_2|NZ_CP011965.1_1962645_1963689_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|243aa|up_1|NZ_CP011965.1_1963729_1964458_-	NA	NA|356aa|up_0|NZ_CP011965.1_1964665_1965733_+	PRK12327, nusA, transcription elongation factor NusA; Provisional	NA|158aa|down_0|NZ_CP011965.1_1969080_1969554_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|388aa|down_1|NZ_CP011965.1_1969555_1970719_+	PRK03287, truB, tRNA pseudouridine synthase B; Provisional	NA|375aa|down_2|NZ_CP011965.1_1970816_1971941_+	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|513aa|down_3|NZ_CP011965.1_1971955_1973494_-	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|211aa|down_4|NZ_CP011965.1_1973621_1974254_+	NA	NA|30aa|down_5|NZ_CP011965.1_1974445_1974535_+	NA	NA|233aa|down_6|NZ_CP011965.1_1974687_1975386_-	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|297aa|down_7|NZ_CP011965.1_1975516_1976407_-	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes	NA|539aa|down_8|NZ_CP011965.1_1977039_1978656_-	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed	NA|141aa|down_9|NZ_CP011965.1_1978789_1979212_-	pfam02082, Rrf2, Transcriptional regulator
