assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001454965.1_ASM145496v1	NZ_CP012144	Salmonella enterica subsp. enterica serovar Typhimurium strain FORC_020 chromosome, complete genome	1	82774-82868	1	CRISPRCasFinder	no	cas3	cas3,PD-DExK,WYL,csa3,DEDDh,DinG,c2c9_V-U4	Unclear	ACCGGGTCTACTGGCTCAGGGTCTAC	26	0	0	NA	NA	NA	1	1	Unclear	cas3,PD-DExK,WYL,csa3,DEDDh,DinG,c2c9_V-U4	NA|31aa|up_5|NZ_CP012144.1_77850_77943_+,NA|160aa|up_4|NZ_CP012144.1_78143_78623_+,NA|38aa|up_2|NZ_CP012144.1_80150_80264_+,NA|155aa|up_0|NZ_CP012144.1_81184_81649_+,NA|70aa|down_2|NZ_CP012144.1_87106_87316_-,NA|115aa|down_3|NZ_CP012144.1_89181_89526_+,NA|284aa|down_9|NZ_CP012144.1_98696_99548_+	NA|310aa|up_9|NZ_CP012144.1_71804_72734_+	PRK09956, PRK09956, ISNCY family transposase	NA|301aa|up_8|NZ_CP012144.1_72776_73679_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|232aa|up_7|NZ_CP012144.1_74188_74884_+	PRK15385, PRK15385, MgtC family protein	NA|909aa|up_6|NZ_CP012144.1_75102_77829_+	PRK15122, PRK15122, magnesium-transporting ATPase; Provisional	NA|31aa|up_5|NZ_CP012144.1_77850_77943_+	NA	NA|160aa|up_4|NZ_CP012144.1_78143_78623_+	NA	NA|227aa|up_3|NZ_CP012144.1_78851_79532_-	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|38aa|up_2|NZ_CP012144.1_80150_80264_+	NA	NA|286aa|up_1|NZ_CP012144.1_80316_81174_+	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|155aa|up_0|NZ_CP012144.1_81184_81649_+	NA	NA|206aa|down_0|NZ_CP012144.1_84670_85288_-	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription]	NA|242aa|down_1|NZ_CP012144.1_86384_87110_-	TIGR02646, Hypothetical_protein_SMc04429, TIGR02646 family protein	NA|70aa|down_2|NZ_CP012144.1_87106_87316_-	NA	NA|115aa|down_3|NZ_CP012144.1_89181_89526_+	NA	NA|461aa|down_4|NZ_CP012144.1_90224_91607_+	PRK11462, PRK11462, putative transporter; Provisional	NA|773aa|down_5|NZ_CP012144.1_91618_93937_+	PRK10658, PRK10658, putative alpha-glucosidase; Provisional	NA|570aa|down_6|NZ_CP012144.1_94039_95749_-	pfam05170, AsmA, AsmA family	NA|464aa|down_7|NZ_CP012144.1_95869_97261_-	TIGR00801, Uric_acid_permease, uracil-xanthine permease	NA|402aa|down_8|NZ_CP012144.1_97488_98694_+	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS)	NA|284aa|down_9|NZ_CP012144.1_98696_99548_+	NA
GCF_001454965.1_ASM145496v1	NZ_CP012144	Salmonella enterica subsp. enterica serovar Typhimurium strain FORC_020 chromosome, complete genome	2	584731-584831	2	CRISPRCasFinder	no		cas3,PD-DExK,WYL,csa3,DEDDh,DinG,c2c9_V-U4	Orphan	GCTTCAGTGGCGAACGTCGTGAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,csa3,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|448aa|up_9|NZ_CP012144.1_570809_572153_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|151aa|up_8|NZ_CP012144.1_572780_573233_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|501aa|up_7|NZ_CP012144.1_573260_574763_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|893aa|up_6|NZ_CP012144.1_574787_577466_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|134aa|up_5|NZ_CP012144.1_577686_578088_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|315aa|up_4|NZ_CP012144.1_578087_579032_+	PRK05033, truB, tRNA pseudouridine synthase B; Provisional	NA|90aa|up_3|NZ_CP012144.1_579182_579452_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|712aa|up_2|NZ_CP012144.1_579693_581829_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|295aa|up_1|NZ_CP012144.1_581938_582823_+	PRK11189, PRK11189, lipoprotein NlpI; Provisional	NA|27aa|up_0|NZ_CP012144.1_582928_583009_+	NF033440, small_YrbN, protein YrbN	NA|415aa|down_0|NZ_CP012144.1_585045_586290_+	PRK10483, PRK10483, tryptophan permease; Provisional	NA|336aa|down_1|NZ_CP012144.1_586380_587388_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|299aa|down_2|NZ_CP012144.1_587565_588462_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|down_3|NZ_CP012144.1_588452_589448_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|down_4|NZ_CP012144.1_589664_590189_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|down_5|NZ_CP012144.1_590182_590686_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|106aa|down_6|NZ_CP012144.1_590672_590990_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|down_7|NZ_CP012144.1_591027_591471_+	PRK03467, PRK03467, hypothetical protein; Provisional	NA|173aa|down_8|NZ_CP012144.1_591450_591969_-	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|212aa|down_9|NZ_CP012144.1_592099_592735_+	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs
GCF_001454965.1_ASM145496v1	NZ_CP012144	Salmonella enterica subsp. enterica serovar Typhimurium strain FORC_020 chromosome, complete genome	3	932501-933933	1,3,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas3	cas3,PD-DExK,WYL,csa3,DEDDh,DinG,c2c9_V-U4	Unclear	GTGTTCCCCGTGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC	29,29,29,28	0	0	NA	NA	I-E:I-E:I-E:I-E	20,23,23,20	23	Unclear	cas3,PD-DExK,WYL,csa3,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|381aa|up_9|NZ_CP012144.1_918303_919446_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|919aa|up_8|NZ_CP012144.1_919489_922246_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_7|NZ_CP012144.1_922303_923599_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_6|NZ_CP012144.1_923650_925885_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|119aa|up_5|NZ_CP012144.1_925968_926325_+	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|99aa|up_4|NZ_CP012144.1_926290_926587_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|267aa|up_3|NZ_CP012144.1_927350_928151_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP012144.1_928378_930016_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP012144.1_930098_931397_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP012144.1_931532_932204_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP012144.1_934030_934828_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP012144.1_934915_935278_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP012144.1_935713_937513_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP012144.1_937512_939225_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP012144.1_939300_940035_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP012144.1_940122_941076_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|526aa|down_6|NZ_CP012144.1_941459_943037_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|349aa|down_7|NZ_CP012144.1_944759_945806_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_8|NZ_CP012144.1_946056_946965_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_9|NZ_CP012144.1_946974_948414_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional
GCF_001454965.1_ASM145496v1	NZ_CP012144	Salmonella enterica subsp. enterica serovar Typhimurium strain FORC_020 chromosome, complete genome	4	943070-944745	3,4,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3	cas3,PD-DExK,WYL,csa3,DEDDh,DinG,c2c9_V-U4	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	27,27,27	27	Unclear	cas3,PD-DExK,WYL,csa3,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|546aa|up_9|NZ_CP012144.1_928378_930016_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_8|NZ_CP012144.1_930098_931397_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_7|NZ_CP012144.1_931532_932204_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|up_6|NZ_CP012144.1_934030_934828_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|up_5|NZ_CP012144.1_934915_935278_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_4|NZ_CP012144.1_935713_937513_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_3|NZ_CP012144.1_937512_939225_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_2|NZ_CP012144.1_939300_940035_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_1|NZ_CP012144.1_940122_941076_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|526aa|up_0|NZ_CP012144.1_941459_943037_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|349aa|down_0|NZ_CP012144.1_944759_945806_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP012144.1_946056_946965_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP012144.1_946974_948414_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP012144.1_948400_949006_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP012144.1_949056_949380_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP012144.1_949570_949882_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP012144.1_949900_950611_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP012144.1_950610_951090_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP012144.1_951086_952136_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP012144.1_952116_952878_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
