assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001455225.1_ASM145522v1	NZ_CP013338	Raoultella ornithinolytica strain Yangling I2, complete genome	1	3275807-3275902	1	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,DinG,cas14j	Orphan	CCGGGATTGTGTATCGAACCGCAT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG,cas14j	NA,NA	NA|267aa|up_9|NZ_CP013338.1_3264648_3265449_-	cd07713, DHPS-like_MBL-fold, Methanocaldococcus jannaschii dihydropteroate synthase, Thermoanaerobacter tengcongensis Tflp, and related proteins; MBL-fold metallo hydrolase domain	NA|417aa|up_8|NZ_CP013338.1_3265825_3267076_-	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|207aa|up_7|NZ_CP013338.1_3267339_3267960_+	PRK11394, PRK11394, 23S rRNA pseudouridine(2457) synthase RluE	NA|153aa|up_6|NZ_CP013338.1_3267980_3268439_+	cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function	NA|369aa|up_5|NZ_CP013338.1_3268495_3269602_+	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|214aa|up_4|NZ_CP013338.1_3269661_3270303_+	PRK00218, PRK00218, lysogenization regulator HflD	NA|457aa|up_3|NZ_CP013338.1_3270306_3271677_+	PRK09285, PRK09285, adenylosuccinate lyase; Provisional	NA|225aa|up_2|NZ_CP013338.1_3272369_3273044_+	PRK10816, PRK10816, two-component system response regulator PhoP	NA|489aa|up_1|NZ_CP013338.1_3273040_3274507_+	PRK10815, PRK10815, two-component system sensor histidine kinase PhoQ	NA|374aa|up_0|NZ_CP013338.1_3274631_3275753_+	COG2850, COG2850, Uncharacterized conserved protein [Function unknown]	NA|168aa|down_0|NZ_CP013338.1_3275988_3276492_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|410aa|down_1|NZ_CP013338.1_3276624_3277854_-	PRK05469, PRK05469, tripeptide aminopeptidase PepT	NA|373aa|down_2|NZ_CP013338.1_3278128_3279247_+	PRK09452, potA, spermidine/putrescine ABC transporter ATP-binding protein PotA	NA|286aa|down_3|NZ_CP013338.1_3279230_3280088_+	PRK09497, potB, spermidine/putrescine ABC transporter membrane protein; Reviewed	NA|262aa|down_4|NZ_CP013338.1_3280084_3280870_+	PRK09500, potC, spermidine/putrescine ABC transporter membrane protein; Reviewed	NA|349aa|down_5|NZ_CP013338.1_3280866_3281913_+	PRK09501, potD, spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed	NA|174aa|down_6|NZ_CP013338.1_3282019_3282541_+	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]	NA|546aa|down_7|NZ_CP013338.1_3282565_3284203_-	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|240aa|down_8|NZ_CP013338.1_3284507_3285227_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|204aa|down_9|NZ_CP013338.1_3285371_3285983_+	COG4117, COG4117, Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) [Energy production and conversion]
GCF_001455225.1_ASM145522v1	NZ_CP013338	Raoultella ornithinolytica strain Yangling I2, complete genome	2	3729665-3729782	2	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,DinG,cas14j	Orphan	CCCCTTTGTAGCCCCGGTAAGCGCAGCGCCACCGGGG	37	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG,cas14j	NA,NA	NA|224aa|up_9|NZ_CP013338.1_3718539_3719211_+	PRK10643, PRK10643, two-component system response regulator PmrA	NA|364aa|up_8|NZ_CP013338.1_3719215_3720307_+	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|674aa|up_7|NZ_CP013338.1_3720542_3722564_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|241aa|up_6|NZ_CP013338.1_3723301_3724024_+	TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE	NA|241aa|up_5|NZ_CP013338.1_3723965_3724688_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_4|NZ_CP013338.1_3724680_3725436_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|386aa|up_3|NZ_CP013338.1_3725419_3726577_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_2|NZ_CP013338.1_3726573_3727614_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_1|NZ_CP013338.1_3727699_3728989_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_0|NZ_CP013338.1_3729064_3729541_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|469aa|down_0|NZ_CP013338.1_3729788_3731195_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|511aa|down_1|NZ_CP013338.1_3731294_3732827_-	PRK09367, PRK09367, histidine ammonia-lyase; Provisional	NA|562aa|down_2|NZ_CP013338.1_3732828_3734514_-	PRK05414, PRK05414, urocanate hydratase; Provisional	NA|242aa|down_3|NZ_CP013338.1_3734657_3735383_-	PRK14999, PRK14999, histidine utilization repressor; Provisional	NA|319aa|down_4|NZ_CP013338.1_3735439_3736396_-	PRK01722, PRK01722, formimidoylglutamase; Provisional	NA|406aa|down_5|NZ_CP013338.1_3736392_3737610_-	PRK09356, PRK09356, imidazolonepropionase; Validated	NA|428aa|down_6|NZ_CP013338.1_3737977_3739261_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|184aa|down_7|NZ_CP013338.1_3739554_3740106_+	sd00006, TPR, Tetratricopeptide repeat	NA|184aa|down_8|NZ_CP013338.1_3740092_3740644_+	PRK12511, PRK12511, RNA polymerase sigma factor; Provisional	NA|268aa|down_9|NZ_CP013338.1_3740640_3741444_+	COG5662, COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) [Transcription]
GCF_001455225.1_ASM145522v1	NZ_CP013338	Raoultella ornithinolytica strain Yangling I2, complete genome	3	3943864-3943989	3	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,DinG,cas14j	Orphan	CGGGTAGCCCGGATAAGGCGCTGGCGCCGCTATCCGGGAA	40	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG,cas14j	NA,NA	NA|678aa|up_9|NZ_CP013338.1_3931285_3933319_-	PRK09928, PRK09928, choline transport protein BetT; Provisional	NA|198aa|up_8|NZ_CP013338.1_3933447_3934041_+	PRK00767, PRK00767, transcriptional regulator BetI; Validated	NA|491aa|up_7|NZ_CP013338.1_3934052_3935525_+	PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional	NA|561aa|up_6|NZ_CP013338.1_3935539_3937222_+	PRK02106, PRK02106, choline dehydrogenase; Validated	NA|232aa|up_5|NZ_CP013338.1_3937862_3938558_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|523aa|up_4|NZ_CP013338.1_3938770_3940339_+	cd08512, PBP2_NikA_DppA_OppA_like_7, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|338aa|up_3|NZ_CP013338.1_3940440_3941454_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|278aa|up_2|NZ_CP013338.1_3941453_3942287_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|279aa|up_1|NZ_CP013338.1_3942279_3943116_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|236aa|up_0|NZ_CP013338.1_3943102_3943810_+	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|446aa|down_0|NZ_CP013338.1_3943999_3945337_-	PRK06062, PRK06062, hypothetical protein; Provisional	NA|255aa|down_1|NZ_CP013338.1_3945517_3946282_+	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|254aa|down_2|NZ_CP013338.1_3947041_3947803_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|222aa|down_3|NZ_CP013338.1_3947795_3948461_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|214aa|down_4|NZ_CP013338.1_3948475_3949117_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|284aa|down_5|NZ_CP013338.1_3949165_3950017_-	cd13625, PBP2_AA_binding_like_1, Substrate-binding domain of putative amino acid-binding protein; the type 2 periplasmic-binding protein fold	NA|489aa|down_6|NZ_CP013338.1_3950249_3951716_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|423aa|down_7|NZ_CP013338.1_3951970_3953239_-	PRK12893, PRK12893, Zn-dependent hydrolase	NA|395aa|down_8|NZ_CP013338.1_3953228_3954413_-	PRK08310, PRK08310, amidase; Provisional	NA|337aa|down_9|NZ_CP013338.1_3954443_3955454_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
GCF_001455225.1_ASM145522v1	NZ_CP013338	Raoultella ornithinolytica strain Yangling I2, complete genome	4	4863487-4863709	4	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,DinG,cas14j	Orphan	AGCGCCAGCGGGGAGGTTCCCGGACAGCGGGATAACCCCCTGGCCCGGGCTACGC	55	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,DinG,cas14j	NA,NA	NA|291aa|up_9|NZ_CP013338.1_4850836_4851709_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|296aa|up_8|NZ_CP013338.1_4851698_4852586_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|275aa|up_7|NZ_CP013338.1_4852596_4853421_+	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain	NA|358aa|up_6|NZ_CP013338.1_4853426_4854500_+	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]	NA|437aa|up_5|NZ_CP013338.1_4854492_4855803_+	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|253aa|up_4|NZ_CP013338.1_4856240_4856999_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|540aa|up_3|NZ_CP013338.1_4857003_4858623_-	COG3507, XynB, Beta-xylosidase [Carbohydrate transport and metabolism]	NA|460aa|up_2|NZ_CP013338.1_4858635_4860015_-	PRK09669, PRK09669, putative symporter YagG; Provisional	NA|656aa|up_1|NZ_CP013338.1_4860374_4862342_-	PRK08211, PRK08211, YjhG/YagF family D-xylonate dehydratase	NA|303aa|up_0|NZ_CP013338.1_4862356_4863265_-	COG0329, DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|300aa|down_0|NZ_CP013338.1_4863929_4864829_-	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase	NA|295aa|down_1|NZ_CP013338.1_4864852_4865737_-	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|338aa|down_2|NZ_CP013338.1_4865779_4866793_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|647aa|down_3|NZ_CP013338.1_4866840_4868781_-	TIGR04377, 3D-35/4-trihydroxycyclohexane-12-dione_hydrolase, 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase	NA|638aa|down_4|NZ_CP013338.1_4869309_4871223_+	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090)	NA|287aa|down_5|NZ_CP013338.1_4871373_4872234_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|270aa|down_6|NZ_CP013338.1_4872371_4873181_-	COG3718, IolB, Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]	NA|502aa|down_7|NZ_CP013338.1_4873199_4874705_-	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|274aa|down_8|NZ_CP013338.1_4875057_4875879_+	COG4130, COG4130, Predicted sugar epimerase [Carbohydrate transport and metabolism]	NA|501aa|down_9|NZ_CP013338.1_4875977_4877480_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)
