assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001455345.1_ASM145534v1	NZ_CP013274	Bacillus thuringiensis strain CTC, complete genome	1	1189203-1189311	1	CRISPRCasFinder	no		cas3,csa3,WYL,c2c9_V-U4,DinG,cas14k,cas14j,DEDDh	Orphan	TGTATGATTACCTTCCGCATGAGAA	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,c2c9_V-U4,DinG,cas14k,cas14j,DEDDh	NA|58aa|up_7|NZ_CP013274.1_1183141_1183315_-,NA|124aa|up_3|NZ_CP013274.1_1185740_1186112_+,NA	NA|415aa|up_9|NZ_CP013274.1_1179890_1181135_+	COG4469, CoiA, Competence protein CoiA-like family, contains a predicted nuclease    domain [General function prediction only]	NA|609aa|up_8|NZ_CP013274.1_1181185_1183012_+	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|58aa|up_7|NZ_CP013274.1_1183141_1183315_-	NA	NA|298aa|up_6|NZ_CP013274.1_1183544_1184438_-	pfam13743, Thioredoxin_5, Thioredoxin	NA|133aa|up_5|NZ_CP013274.1_1184437_1184836_-	cd14772, TrHb2_Bs-trHb-like_O, Truncated hemoglobins, group 2 (O); Bacillus subtilis TrHb like	NA|193aa|up_4|NZ_CP013274.1_1185017_1185596_-	cd07762, CYTH-like_Pase_1, Uncharacterized subgroup 1 of the CYTH-like superfamily	NA|124aa|up_3|NZ_CP013274.1_1185740_1186112_+	NA	NA|213aa|up_2|NZ_CP013274.1_1186142_1186781_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|266aa|up_1|NZ_CP013274.1_1186799_1187597_+	PRK04885, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	NA|298aa|up_0|NZ_CP013274.1_1187612_1188506_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|247aa|down_0|NZ_CP013274.1_1190098_1190839_-	PRK13625, PRK13625, bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional	NA|387aa|down_1|NZ_CP013274.1_1190913_1192074_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|312aa|down_2|NZ_CP013274.1_1192220_1193156_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|253aa|down_3|NZ_CP013274.1_1193162_1193921_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|282aa|down_4|NZ_CP013274.1_1194063_1194909_-	pfam05711, TylF, Macrocin-O-methyltransferase (TylF)	NA|287aa|down_5|NZ_CP013274.1_1195031_1195892_-	pfam18573, BclA_C, BclA C-terminal domain	NA|367aa|down_6|NZ_CP013274.1_1196057_1197158_+	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide	NA|230aa|down_7|NZ_CP013274.1_1197299_1197989_+	pfam13489, Methyltransf_23, Methyltransferase domain	NA|229aa|down_8|NZ_CP013274.1_1197985_1198672_+	pfam13712, Glyco_tranf_2_5, Glycosyltransferase like family	NA|227aa|down_9|NZ_CP013274.1_1198684_1199365_+	pfam13712, Glyco_tranf_2_5, Glycosyltransferase like family
GCF_001455345.1_ASM145534v1	NZ_CP013274	Bacillus thuringiensis strain CTC, complete genome	2	2818352-2818515	1	PILER-CR	no		cas3,csa3,WYL,c2c9_V-U4,DinG,cas14k,cas14j,DEDDh	Orphan	TCATCGGAATGAATGTTCATTCCTATCATT	30	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,WYL,c2c9_V-U4,DinG,cas14k,cas14j,DEDDh	NA,NA	NA|174aa|up_9|NZ_CP013274.1_2804479_2805001_-	pfam12867, DinB_2, DinB superfamily	NA|167aa|up_8|NZ_CP013274.1_2805016_2805517_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|182aa|up_7|NZ_CP013274.1_2805551_2806097_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|234aa|up_6|NZ_CP013274.1_2806112_2806814_-	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|228aa|up_5|NZ_CP013274.1_2806830_2807514_-	cd06561, AlkD_like, A new structural DNA glycosylase	NA|276aa|up_4|NZ_CP013274.1_2807896_2808724_+	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins	NA|224aa|up_3|NZ_CP013274.1_2809602_2810274_+	TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family	NA|658aa|up_2|NZ_CP013274.1_2810331_2812305_-	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|542aa|up_1|NZ_CP013274.1_2812835_2814461_-	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional	NA|1042aa|up_0|NZ_CP013274.1_2815163_2818289_-	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|189aa|down_0|NZ_CP013274.1_2818529_2819096_-	pfam16295, TetR_C_10, Tetracycline repressor, C-terminal all-alpha domain	NA|386aa|down_1|NZ_CP013274.1_2819292_2820450_-	COG4552, Eis, Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]	NA|430aa|down_2|NZ_CP013274.1_2820736_2822026_-	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional	NA|370aa|down_3|NZ_CP013274.1_2822042_2823152_-	PRK06545, PRK06545, prephenate dehydrogenase; Validated	NA|367aa|down_4|NZ_CP013274.1_2823135_2824236_-	PRK01533, PRK01533, histidinol-phosphate aminotransferase; Validated	NA|391aa|down_5|NZ_CP013274.1_2824254_2825427_-	PRK12463, PRK12463, chorismate synthase; Reviewed	NA|359aa|down_6|NZ_CP013274.1_2825710_2826787_-	PRK12595, PRK12595, bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed	NA|1161aa|down_7|NZ_CP013274.1_2827617_2831100_-	cd01406, SIR2-like, Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation	NA|148aa|down_8|NZ_CP013274.1_2831280_2831724_+	pfam10710, DUF2512, Protein of unknown function (DUF2512)	NA|177aa|down_9|NZ_CP013274.1_2831933_2832464_-	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases
GCF_001455345.1_ASM145534v1	NZ_CP013274	Bacillus thuringiensis strain CTC, complete genome	3	3257685-3257893	2	PILER-CR	no		cas3,csa3,WYL,c2c9_V-U4,DinG,cas14k,cas14j,DEDDh	Orphan	CCTTGTGGTCCCTGTATGCCTTGAATTCCTTGTGGACCGGTTGGACC	47	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,WYL,c2c9_V-U4,DinG,cas14k,cas14j,DEDDh	NA|50aa|up_6|NZ_CP013274.1_3251138_3251288_-,NA|48aa|up_0|NZ_CP013274.1_3256400_3256544_+,NA|126aa|down_4|NZ_CP013274.1_3264615_3264993_+	NA|188aa|up_9|NZ_CP013274.1_3247069_3247633_-	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|830aa|up_8|NZ_CP013274.1_3247901_3250391_-	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|253aa|up_7|NZ_CP013274.1_3250387_3251146_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|50aa|up_6|NZ_CP013274.1_3251138_3251288_-	NA	NA|333aa|up_5|NZ_CP013274.1_3251365_3252364_-	PRK12556, PRK12556, tryptophanyl-tRNA synthetase; Provisional	NA|386aa|up_4|NZ_CP013274.1_3252903_3254061_+	PRK12464, PRK12464, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional	NA|377aa|up_3|NZ_CP013274.1_3254089_3255220_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|83aa|up_2|NZ_CP013274.1_3255274_3255523_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|154aa|up_1|NZ_CP013274.1_3255660_3256122_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|48aa|up_0|NZ_CP013274.1_3256400_3256544_+	NA	NA|825aa|down_0|NZ_CP013274.1_3259151_3261626_-	pfam03157, Glutenin_hmw, High molecular weight glutenin subunit	NA|252aa|down_1|NZ_CP013274.1_3261807_3262563_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|183aa|down_2|NZ_CP013274.1_3262604_3263153_-	pfam11706, zf-CGNR, CGNR zinc finger	NA|396aa|down_3|NZ_CP013274.1_3263260_3264448_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|126aa|down_4|NZ_CP013274.1_3264615_3264993_+	NA	NA|80aa|down_5|NZ_CP013274.1_3265069_3265309_+	pfam13061, DUF3923, Protein of unknown function (DUF3923)	NA|183aa|down_6|NZ_CP013274.1_3265414_3265963_-	PRK04164, PRK04164, hypothetical protein; Provisional	NA|138aa|down_7|NZ_CP013274.1_3266161_3266575_-	pfam03899, ATP-synt_I, ATP synthase I chain	NA|443aa|down_8|NZ_CP013274.1_3266627_3267956_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|136aa|down_9|NZ_CP013274.1_3268077_3268485_-	cd04779, HTH_MerR-like_sg4, Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily
GCF_001455345.1_ASM145534v1	NZ_CP013274	Bacillus thuringiensis strain CTC, complete genome	4	3260725-3260825	2	CRISPRCasFinder	no		cas3,csa3,WYL,c2c9_V-U4,DinG,cas14k,cas14j,DEDDh	Orphan	CCTGTTGGCCCACCAGGTGGACC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,c2c9_V-U4,DinG,cas14k,cas14j,DEDDh	NA|50aa|up_7|NZ_CP013274.1_3251138_3251288_-,NA|48aa|up_1|NZ_CP013274.1_3256400_3256544_+,NA|126aa|down_3|NZ_CP013274.1_3264615_3264993_+	NA|830aa|up_9|NZ_CP013274.1_3247901_3250391_-	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|253aa|up_8|NZ_CP013274.1_3250387_3251146_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|50aa|up_7|NZ_CP013274.1_3251138_3251288_-	NA	NA|333aa|up_6|NZ_CP013274.1_3251365_3252364_-	PRK12556, PRK12556, tryptophanyl-tRNA synthetase; Provisional	NA|386aa|up_5|NZ_CP013274.1_3252903_3254061_+	PRK12464, PRK12464, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional	NA|377aa|up_4|NZ_CP013274.1_3254089_3255220_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|83aa|up_3|NZ_CP013274.1_3255274_3255523_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|154aa|up_2|NZ_CP013274.1_3255660_3256122_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|48aa|up_1|NZ_CP013274.1_3256400_3256544_+	NA	NA|838aa|up_0|NZ_CP013274.1_3256615_3259129_-	pfam03157, Glutenin_hmw, High molecular weight glutenin subunit	NA|252aa|down_0|NZ_CP013274.1_3261807_3262563_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|183aa|down_1|NZ_CP013274.1_3262604_3263153_-	pfam11706, zf-CGNR, CGNR zinc finger	NA|396aa|down_2|NZ_CP013274.1_3263260_3264448_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|126aa|down_3|NZ_CP013274.1_3264615_3264993_+	NA	NA|80aa|down_4|NZ_CP013274.1_3265069_3265309_+	pfam13061, DUF3923, Protein of unknown function (DUF3923)	NA|183aa|down_5|NZ_CP013274.1_3265414_3265963_-	PRK04164, PRK04164, hypothetical protein; Provisional	NA|138aa|down_6|NZ_CP013274.1_3266161_3266575_-	pfam03899, ATP-synt_I, ATP synthase I chain	NA|443aa|down_7|NZ_CP013274.1_3266627_3267956_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|136aa|down_8|NZ_CP013274.1_3268077_3268485_-	cd04779, HTH_MerR-like_sg4, Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily	NA|258aa|down_9|NZ_CP013274.1_3268690_3269464_+	pfam13704, Glyco_tranf_2_4, Glycosyl transferase family 2
GCF_001455345.1_ASM145534v1	NZ_CP013274	Bacillus thuringiensis strain CTC, complete genome	5	5085558-5085755	3	CRISPRCasFinder	no		cas3,csa3,WYL,c2c9_V-U4,DinG,cas14k,cas14j,DEDDh	Orphan	GTTGATTTTTCTTCTTTTTGAGA	23	0	0	NA	NA	NA	3	3	Orphan	cas3,csa3,WYL,c2c9_V-U4,DinG,cas14k,cas14j,DEDDh	NA|45aa|up_0|NZ_CP013274.1_5085299_5085434_-,NA	NA|556aa|up_9|NZ_CP013274.1_5074655_5076323_-	PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional	NA|268aa|up_8|NZ_CP013274.1_5076338_5077142_-	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|400aa|up_7|NZ_CP013274.1_5077147_5078347_-	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|341aa|up_6|NZ_CP013274.1_5078349_5079372_-	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA|715aa|up_5|NZ_CP013274.1_5079488_5081633_-	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|387aa|up_4|NZ_CP013274.1_5081657_5082818_-	COG1887, TagB, Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]	NA|132aa|up_3|NZ_CP013274.1_5082829_5083225_-	cd02171, G3P_Cytidylyltransferase, glycerol-3-phosphate cytidylyltransferase	NA|334aa|up_2|NZ_CP013274.1_5083555_5084557_-	PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional	NA|133aa|up_1|NZ_CP013274.1_5084718_5085117_-	pfam12116, SpoIIID, Stage III sporulation protein D	NA|45aa|up_0|NZ_CP013274.1_5085299_5085434_-	NA	NA|235aa|down_0|NZ_CP013274.1_5086642_5087347_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|281aa|down_1|NZ_CP013274.1_5087346_5088189_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|336aa|down_2|NZ_CP013274.1_5088369_5089377_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|539aa|down_3|NZ_CP013274.1_5089493_5091110_-	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|340aa|down_4|NZ_CP013274.1_5091245_5092265_-	TIGR02870, Stage_II_sporulation_protein_D, stage II sporulation protein D	NA|435aa|down_5|NZ_CP013274.1_5092472_5093777_-	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|237aa|down_6|NZ_CP013274.1_5093816_5094527_-	pfam08680, DUF1779, TATA-box binding	NA|79aa|down_7|NZ_CP013274.1_5094572_5094809_-	COG4836, COG4836, Predicted membrane protein [Function unknown]	NA|507aa|down_8|NZ_CP013274.1_5095021_5096542_-	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN	NA|501aa|down_9|NZ_CP013274.1_5096543_5098046_-	PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M; Reviewed
