assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001455385.1_ASM145538v1	NZ_CP013253	Escherichia coli strain CQSW20 chromosome, complete genome	1	191869-192009	1	CRISPRCasFinder	no		PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4	Orphan	CACGCCGCATCCGCCAGTGGCGCGGTGCAGATGCCGGATGC	41	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4	NA,NA|357aa|down_1|NZ_CP013253.1_194463_195534_-	NA|433aa|up_9|NZ_CP013253.1_176815_178114_-	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter	NA|471aa|up_8|NZ_CP013253.1_178596_180009_+	pfam02614, UxaC, Glucuronate isomerase	NA|184aa|up_7|NZ_CP013253.1_181592_182144_+	pfam10688, Imp-YgjV, Bacterial inner membrane protein	NA|415aa|up_6|NZ_CP013253.1_182148_183393_-	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional	NA|322aa|up_5|NZ_CP013253.1_183791_184757_-	TIGR03718, R_switched_Alx, integral membrane protein, TerC family	NA|329aa|up_4|NZ_CP013253.1_185039_186026_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|231aa|up_3|NZ_CP013253.1_186104_186797_-	COG2949, SanA, Uncharacterized membrane protein [Function unknown]	NA|168aa|up_2|NZ_CP013253.1_186873_187377_-	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only]	NA|379aa|up_1|NZ_CP013253.1_187461_188598_+	PRK15001, PRK15001, 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG	NA|105aa|up_0|NZ_CP013253.1_188881_189196_+	COG4680, COG4680, Uncharacterized protein conserved in bacteria [Function unknown]	NA|784aa|down_0|NZ_CP013253.1_192095_194447_-	PRK10137, PRK10137, alpha-glucosidase; Provisional	NA|357aa|down_1|NZ_CP013253.1_194463_195534_-	NA	NA|478aa|down_2|NZ_CP013253.1_195667_197101_-	PRK15238, PRK15238, inner membrane transporter YjeM; Provisional	NA|150aa|down_3|NZ_CP013253.1_197163_197613_-	PRK10202, ebgC, beta-galactosidase subunit beta	NA|1031aa|down_4|NZ_CP013253.1_197609_200702_-	PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed	NA|328aa|down_5|NZ_CP013253.1_200885_201869_-	PRK10339, PRK10339, DNA-binding transcriptional repressor EbgR; Provisional	NA|111aa|down_6|NZ_CP013253.1_202087_202420_+	PRK10089, PRK10089, chaperone CsaA	NA|497aa|down_7|NZ_CP013253.1_202461_203952_-	PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional	NA|507aa|down_8|NZ_CP013253.1_204258_205779_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|208aa|down_9|NZ_CP013253.1_205932_206556_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]
GCF_001455385.1_ASM145538v1	NZ_CP013253	Escherichia coli strain CQSW20 chromosome, complete genome	2	518804-519136	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no		PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACC	28,28,28	0	0	NA	NA	I-E:I-E:I-E	5,5,5	5	Orphan	PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4	NA|47aa|up_1|NZ_CP013253.1_517513_517654_-,NA	NA|434aa|up_9|NZ_CP013253.1_508210_509512_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP013253.1_509559_511794_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP013253.1_511871_512120_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP013253.1_512119_512455_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP013253.1_512525_513317_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP013253.1_513544_515182_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP013253.1_515269_516568_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP013253.1_516627_517500_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP013253.1_517513_517654_-	NA	NA|224aa|up_0|NZ_CP013253.1_517792_518464_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP013253.1_519775_521254_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP013253.1_521280_522558_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP013253.1_522874_523660_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP013253.1_523729_525184_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP013253.1_525205_526615_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP013253.1_526592_527372_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|298aa|down_6|NZ_CP013253.1_527335_528229_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP013253.1_528376_528952_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP013253.1_528968_529229_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP013253.1_529219_530491_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_001455385.1_ASM145538v1	NZ_CP013253	Escherichia coli strain CQSW20 chromosome, complete genome	3	544683-545077	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cse2gr11,cas7,cas5,cas6e,cas1,cas2	PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4	Type I-E	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAA,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,25,29	0	0	NA	NA	I-E:I-E:I-E	5,6,6	6	TypeI-E	PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|122aa|up_9|NZ_CP013253.1_530568_530934_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_8|NZ_CP013253.1_531249_533049_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_7|NZ_CP013253.1_533048_534761_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_6|NZ_CP013253.1_534835_535570_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cse2gr11|161aa|up_5|NZ_CP013253.1_540508_540991_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|NZ_CP013253.1_541003_542095_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|up_3|NZ_CP013253.1_542097_542772_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|NZ_CP013253.1_542758_543358_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|NZ_CP013253.1_543373_544291_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NZ_CP013253.1_544292_544577_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP013253.1_545159_546197_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP013253.1_546448_547357_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP013253.1_547358_548786_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP013253.1_548785_549391_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP013253.1_549440_549764_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP013253.1_549957_550269_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP013253.1_550287_550998_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP013253.1_550997_551477_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP013253.1_551473_552523_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP013253.1_552503_553265_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_001455385.1_ASM145538v1	NZ_CP013253	Escherichia coli strain CQSW20 chromosome, complete genome	4	1068254-1068371	4	CRISPRCasFinder	no		PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|62aa|up_9|NZ_CP013253.1_1057539_1057725_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|NZ_CP013253.1_1057737_1058637_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP013253.1_1058829_1060020_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP013253.1_1060016_1061276_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP013253.1_1061265_1062894_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP013253.1_1063166_1064525_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP013253.1_1064529_1065606_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP013253.1_1066068_1066719_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP013253.1_1066772_1067027_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP013253.1_1067026_1068157_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP013253.1_1068390_1070676_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP013253.1_1071371_1075124_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP013253.1_1075251_1075974_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP013253.1_1076120_1078748_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|208aa|down_4|NZ_CP013253.1_1080580_1081204_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|259aa|down_5|NZ_CP013253.1_1087394_1088171_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_6|NZ_CP013253.1_1088244_1089429_-	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|441aa|down_7|NZ_CP013253.1_1089459_1090782_-	pfam02667, SCFA_trans, Short chain fatty acid transporter	NA|221aa|down_8|NZ_CP013253.1_1091427_1092090_-	PRK09920, PRK09920, acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Provisional	NA|462aa|down_9|NZ_CP013253.1_1092285_1093671_-	PRK11361, PRK11361, acetoacetate metabolism transcriptional regulator AtoC
GCF_001455385.1_ASM145538v1	NZ_CP013253	Escherichia coli strain CQSW20 chromosome, complete genome	5	1670105-1670228	5	CRISPRCasFinder	no		PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4	Orphan	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4	NA,NA|30aa|down_6|NZ_CP013253.1_1679123_1679213_+	NA|471aa|up_9|NZ_CP013253.1_1659559_1660972_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP013253.1_1661528_1661738_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP013253.1_1662192_1662819_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP013253.1_1662839_1664942_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP013253.1_1664954_1665593_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP013253.1_1665656_1666325_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP013253.1_1666321_1667107_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP013253.1_1667110_1667923_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP013253.1_1667934_1669539_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP013253.1_1669664_1669970_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP013253.1_1670542_1671799_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP013253.1_1671839_1673213_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP013253.1_1673427_1674069_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP013253.1_1674108_1675257_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP013253.1_1675547_1676759_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP013253.1_1676871_1677804_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|30aa|down_6|NZ_CP013253.1_1679123_1679213_+	NA	NA|390aa|down_7|NZ_CP013253.1_1679378_1680548_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_8|NZ_CP013253.1_1680709_1681291_-	PRK10543, PRK10543, superoxide dismutase [Fe]	NA|272aa|down_9|NZ_CP013253.1_1681418_1682234_-	pfam00877, NLPC_P60, NlpC/P60 family
GCF_001455385.1_ASM145538v1	NZ_CP013253	Escherichia coli strain CQSW20 chromosome, complete genome	6	1707630-1707768	6	CRISPRCasFinder	no		PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4	Orphan	CCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCG	43	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|110aa|up_9|NZ_CP013253.1_1698271_1698601_+	PRK11372, PRK11372, C-type lysozyme inhibitor	NA|219aa|up_8|NZ_CP013253.1_1698659_1699316_+	PRK05679, PRK05679, pyridoxal 5'-phosphate synthase	NA|425aa|up_7|NZ_CP013253.1_1699444_1700719_+	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|287aa|up_6|NZ_CP013253.1_1700780_1701641_+	PRK05756, PRK05756, pyridoxal kinase PdxY	NA|202aa|up_5|NZ_CP013253.1_1701684_1702290_-	PRK10542, PRK10542, glutathionine S-transferase; Provisional	NA|501aa|up_4|NZ_CP013253.1_1702395_1703898_-	PRK09584, tppB, dipeptide/tripeptide permease DtpA	NA|212aa|up_3|NZ_CP013253.1_1704508_1705144_-	PRK10702, PRK10702, endonuclease III; Provisional	NA|232aa|up_2|NZ_CP013253.1_1705143_1705839_-	PRK12405, PRK12405, electron transport complex RsxE subunit; Provisional	NA|207aa|up_1|NZ_CP013253.1_1705842_1706463_-	PRK01908, PRK01908, electron transport complex protein RnfG; Validated	NA|353aa|up_0|NZ_CP013253.1_1706466_1707525_-	PRK00816, rnfD, electron transport complex protein RnfD; Reviewed	NA|193aa|down_0|NZ_CP013253.1_1709452_1710031_-	PRK05113, PRK05113, electron transport complex protein RnfB; Provisional	NA|194aa|down_1|NZ_CP013253.1_1710030_1710612_-	PRK05151, PRK05151, electron transport complex protein RsxA; Provisional	NA|147aa|down_2|NZ_CP013253.1_1710688_1711129_-	pfam10754, DUF2569, Protein of unknown function (DUF2569)	NA|72aa|down_3|NZ_CP013253.1_1711214_1711430_-	PRK10391, PRK10391, transcription modulator YdgT	NA|42aa|down_4|NZ_CP013253.1_1711702_1711828_-	NF033231, small_Blr, division septum protein Blr	NA|347aa|down_5|NZ_CP013253.1_1712070_1713111_+	PRK11579, PRK11579, putative oxidoreductase; Provisional	NA|334aa|down_6|NZ_CP013253.1_1713144_1714146_-	PRK09358, PRK09358, adenosine deaminase; Provisional	NA|391aa|down_7|NZ_CP013253.1_1714249_1715422_-	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]	NA|531aa|down_8|NZ_CP013253.1_1715431_1717024_-	PRK10110, PRK10110, PTS maltose transporter subunit IICB	NA|343aa|down_9|NZ_CP013253.1_1717198_1718227_+	PRK10014, PRK10014, DNA-binding transcriptional repressor MalI; Provisional
GCF_001455385.1_ASM145538v1	NZ_CP013253	Escherichia coli strain CQSW20 chromosome, complete genome	7	2396134-2396225	7	CRISPRCasFinder	no		PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4	NA|70aa|up_8|NZ_CP013253.1_2385211_2385421_-,NA	NA|503aa|up_9|NZ_CP013253.1_2383544_2385053_-	PRK15419, PRK15419, sodium/proline symporter PutP	NA|70aa|up_8|NZ_CP013253.1_2385211_2385421_-	NA	NA|1321aa|up_7|NZ_CP013253.1_2385475_2389438_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_6|NZ_CP013253.1_2389477_2390116_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_5|NZ_CP013253.1_2390403_2391495_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_4|NZ_CP013253.1_2391494_2392187_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_3|NZ_CP013253.1_2392198_2392585_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_2|NZ_CP013253.1_2392592_2393393_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_1|NZ_CP013253.1_2393402_2393993_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|443aa|up_0|NZ_CP013253.1_2394517_2395846_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP013253.1_2396649_2397246_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP013253.1_2397266_2397494_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP013253.1_2397531_2398773_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP013253.1_2399065_2400322_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP013253.1_2400582_2401503_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP013253.1_2401502_2401808_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP013253.1_2401959_2402559_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP013253.1_2402555_2405102_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP013253.1_2405101_2406274_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP013253.1_2406403_2407096_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_001455385.1_ASM145538v1	NZ_CP013253	Escherichia coli strain CQSW20 chromosome, complete genome	8	2658293-2658437	8	CRISPRCasFinder	no		PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|171aa|up_9|NZ_CP013253.1_2645659_2646172_-	TIGR02667, Molybdenum_cofactor_biosynthesis_protein_B	NA|330aa|up_8|NZ_CP013253.1_2646193_2647183_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_7|NZ_CP013253.1_2647579_2648488_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_6|NZ_CP013253.1_2648679_2650701_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_5|NZ_CP013253.1_2651279_2651957_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_4|NZ_CP013253.1_2651949_2652705_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|351aa|up_3|NZ_CP013253.1_2653841_2654894_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP013253.1_2654967_2656257_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP013253.1_2656315_2656792_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP013253.1_2656943_2658227_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP013253.1_2658460_2660722_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP013253.1_2660904_2662338_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP013253.1_2662413_2663466_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP013253.1_2663649_2664603_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP013253.1_2664643_2665639_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP013253.1_2665793_2666612_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP013253.1_2666612_2667671_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP013253.1_2667673_2668363_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP013253.1_2668362_2669136_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP013253.1_2669302_2669452_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_001455385.1_ASM145538v1	NZ_CP013253	Escherichia coli strain CQSW20 chromosome, complete genome	9	2902474-2902570	9	CRISPRCasFinder	no		PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|868aa|up_9|NZ_CP013253.1_2891636_2894240_-	PRK15198, PRK15198, outer membrane usher protein FimD	NA|231aa|up_8|NZ_CP013253.1_2894270_2894963_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_7|NZ_CP013253.1_2895182_2895725_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|71aa|up_6|NZ_CP013253.1_2897062_2897275_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP013253.1_2897382_2897904_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP013253.1_2897939_2899325_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP013253.1_2899498_2899993_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP013253.1_2899995_2900718_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP013253.1_2900835_2901345_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP013253.1_2901341_2902409_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP013253.1_2902603_2903497_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP013253.1_2903493_2904309_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP013253.1_2904319_2905579_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP013253.1_2905588_2907256_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP013253.1_2907572_2908622_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP013253.1_2908643_2909879_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP013253.1_2909889_2910675_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|NZ_CP013253.1_2910902_2912048_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP013253.1_2912069_2913371_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP013253.1_2913427_2914789_-	PRK08044, PRK08044, allantoinase AllB
GCF_001455385.1_ASM145538v1	NZ_CP013253	Escherichia coli strain CQSW20 chromosome, complete genome	10	3042713-3042857	10	CRISPRCasFinder	no		PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4	NA,NA|28aa|down_2|NZ_CP013253.1_3044902_3044986_-	NA|357aa|up_9|NZ_CP013253.1_3027851_3028922_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_CP013253.1_3029014_3029596_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_CP013253.1_3029600_3031418_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_CP013253.1_3031573_3032947_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_CP013253.1_3033022_3034342_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_CP013253.1_3034748_3036044_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_CP013253.1_3036101_3036791_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_CP013253.1_3036980_3038183_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_CP013253.1_3038179_3041326_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_CP013253.1_3041451_3042636_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_CP013253.1_3042880_3043789_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_CP013253.1_3043913_3044825_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_CP013253.1_3044902_3044986_-	NA	NA|95aa|down_3|NZ_CP013253.1_3045471_3045756_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_CP013253.1_3045827_3046505_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_CP013253.1_3046762_3046954_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_CP013253.1_3047003_3047528_-	PRK03731, aroL, shikimate kinase AroL	NA|153aa|down_7|NZ_CP013253.1_3047710_3048169_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_CP013253.1_3048288_3049098_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_CP013253.1_3049114_3050230_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCF_001455385.1_ASM145538v1	NZ_CP013253	Escherichia coli strain CQSW20 chromosome, complete genome	11	3296178-3296312	11	CRISPRCasFinder	no		PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4	Orphan	GGCCTACACGCTGCGATTTTGTAGGCCGGATAAGCAAAGCGCATCCGGCA	50	1	2	3296228-3296262|3296228-3296262	NZ_CP013253.1_3357312-3357278|NZ_CP013253.1_381009-380975	NA	1	1	Orphan	PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,cas3,DEDDh,DinG,c2c9_V-U4	NA,NA|217aa|down_3|NZ_CP013253.1_3303749_3304400_-	NA|202aa|up_9|NZ_CP013253.1_3283508_3284114_+	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit	NA|393aa|up_8|NZ_CP013253.1_3284162_3285341_-	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter	NA|44aa|up_7|NZ_CP013253.1_3285441_3285573_-	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|328aa|up_6|NZ_CP013253.1_3287480_3288464_+	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|537aa|up_5|NZ_CP013253.1_3288439_3290050_+	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|233aa|up_4|NZ_CP013253.1_3290033_3290732_+	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|255aa|up_3|NZ_CP013253.1_3290845_3291610_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|293aa|up_2|NZ_CP013253.1_3291695_3292574_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|567aa|up_1|NZ_CP013253.1_3292912_3294613_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_0|NZ_CP013253.1_3294623_3296126_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|down_0|NZ_CP013253.1_3296325_3297021_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|784aa|down_1|NZ_CP013253.1_3297095_3299447_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|220aa|down_2|NZ_CP013253.1_3302528_3303188_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|217aa|down_3|NZ_CP013253.1_3303749_3304400_-	NA	NA|272aa|down_4|NZ_CP013253.1_3304694_3305510_-	PRK09430, djlA, co-chaperone DjlA	NA|785aa|down_5|NZ_CP013253.1_3305764_3308119_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_6|NZ_CP013253.1_3308171_3309458_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_7|NZ_CP013253.1_3309457_3310447_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_8|NZ_CP013253.1_3310443_3311265_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|126aa|down_9|NZ_CP013253.1_3311267_3311645_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed
