assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001456095.3_ASM145609v3	NZ_CP012992	Klebsiella pneumoniae strain KpN06 chromosome, complete genome	1	271118-271212	1	CRISPRCasFinder	no		cas3,csa3,DinG,WYL,DEDDh	Orphan	TGCACTACCCCCTGGTGAATCTCCTGCAC	29	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,WYL,DEDDh,RT	NA|115aa|up_8|NZ_CP012992.1_264215_264560_-,NA|159aa|up_3|NZ_CP012992.1_267467_267944_-,NA|103aa|down_3|NZ_CP012992.1_272955_273264_+,NA|65aa|down_4|NZ_CP012992.1_273253_273448_+,NA|75aa|down_5|NZ_CP012992.1_273618_273843_+,NA|122aa|down_6|NZ_CP012992.1_273843_274209_+,NA|85aa|down_7|NZ_CP012992.1_274201_274456_+,NA|73aa|down_8|NZ_CP012992.1_274427_274646_+,NA|142aa|down_9|NZ_CP012992.1_274642_275068_+	NA|92aa|up_9|NZ_CP012992.1_263943_264219_-	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|115aa|up_8|NZ_CP012992.1_264215_264560_-	NA	NA|180aa|up_7|NZ_CP012992.1_264556_265096_-	COG3926, zliS, Lysozyme family protein [General function prediction only]	NA|100aa|up_6|NZ_CP012992.1_265092_265392_-	pfam16083, Phage_holin_3_3, LydA holin phage, holin superfamily III	NA|108aa|up_5|NZ_CP012992.1_265918_266242_-	cd08026, DUF326, Cysteine-rich 4 helical bundle widely conserved in bacteria	NA|261aa|up_4|NZ_CP012992.1_266688_267471_-	pfam03589, Antiterm, Antitermination protein	NA|159aa|up_3|NZ_CP012992.1_267467_267944_-	NA	NA|123aa|up_2|NZ_CP012992.1_268025_268394_-	pfam05866, RusA, Endodeoxyribonuclease RusA	NA|460aa|up_1|NZ_CP012992.1_268380_269760_-	TIGR00665, DnaB, replicative DNA helicase	NA|293aa|up_0|NZ_CP012992.1_269756_270635_-	PRK07952, PRK07952, DNA replication protein DnaC; Validated	NA|63aa|down_0|NZ_CP012992.1_271473_271662_-	pfam13973, DUF4222, Domain of unknown function (DUF4222)	NA|76aa|down_1|NZ_CP012992.1_271737_271965_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|236aa|down_2|NZ_CP012992.1_272089_272797_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|103aa|down_3|NZ_CP012992.1_272955_273264_+	NA	NA|65aa|down_4|NZ_CP012992.1_273253_273448_+	NA	NA|75aa|down_5|NZ_CP012992.1_273618_273843_+	NA	NA|122aa|down_6|NZ_CP012992.1_273843_274209_+	NA	NA|85aa|down_7|NZ_CP012992.1_274201_274456_+	NA	NA|73aa|down_8|NZ_CP012992.1_274427_274646_+	NA	NA|142aa|down_9|NZ_CP012992.1_274642_275068_+	NA
GCF_001456095.3_ASM145609v3	NZ_CP012992	Klebsiella pneumoniae strain KpN06 chromosome, complete genome	2	1083088-1083171	2	CRISPRCasFinder	no		cas3,csa3,DinG,WYL,DEDDh	Orphan	GGCGTCTGACGCCTTGCCCGGCCTACGG	28	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,WYL,DEDDh,RT	NA|71aa|up_7|NZ_CP012992.1_1076264_1076477_+,NA|169aa|down_8|NZ_CP012992.1_1094673_1095180_-,NA|49aa|down_9|NZ_CP012992.1_1095384_1095531_-	NA|366aa|up_9|NZ_CP012992.1_1072485_1073583_+	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|674aa|up_8|NZ_CP012992.1_1073831_1075853_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|71aa|up_7|NZ_CP012992.1_1076264_1076477_+	NA	NA|241aa|up_6|NZ_CP012992.1_1076563_1077286_+	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|241aa|up_5|NZ_CP012992.1_1077227_1077950_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_4|NZ_CP012992.1_1077942_1078698_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|386aa|up_3|NZ_CP012992.1_1078681_1079839_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_2|NZ_CP012992.1_1079835_1080876_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_1|NZ_CP012992.1_1081089_1082379_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_0|NZ_CP012992.1_1082449_1082926_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|461aa|down_0|NZ_CP012992.1_1083706_1085089_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|509aa|down_1|NZ_CP012992.1_1085187_1086714_-	PRK09367, PRK09367, histidine ammonia-lyase; Provisional	NA|313aa|down_2|NZ_CP012992.1_1086710_1087649_-	PRK05414, PRK05414, urocanate hydratase; Provisional	NA|242aa|down_3|NZ_CP012992.1_1088541_1089267_-	PRK14999, PRK14999, histidine utilization repressor; Provisional	NA|319aa|down_4|NZ_CP012992.1_1089328_1090285_-	PRK01722, PRK01722, formimidoylglutamase; Provisional	NA|440aa|down_5|NZ_CP012992.1_1090281_1091601_-	PRK09356, PRK09356, imidazolonepropionase; Validated	NA|428aa|down_6|NZ_CP012992.1_1091755_1093039_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|308aa|down_7|NZ_CP012992.1_1093733_1094657_+	COG3274, COG3274, Predicted O-acyltransferase [General function prediction only]	NA|169aa|down_8|NZ_CP012992.1_1094673_1095180_-	NA	NA|49aa|down_9|NZ_CP012992.1_1095384_1095531_-	NA
GCF_001456095.3_ASM145609v3	NZ_CP012992	Klebsiella pneumoniae strain KpN06 chromosome, complete genome	3	1370591-1370714	3	CRISPRCasFinder	no		cas3,csa3,DinG,WYL,DEDDh	Orphan	AGGCCCGGTAAGCGCAGCGCCACCGGGCGATGCTATCA	38	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,WYL,DEDDh,RT	NA,NA|46aa|down_3|NZ_CP012992.1_1374721_1374859_-,NA|42aa|down_4|NZ_CP012992.1_1374821_1374947_+,NA|130aa|down_6|NZ_CP012992.1_1375635_1376025_-	NA|181aa|up_9|NZ_CP012992.1_1360998_1361541_+	pfam11354, DUF3156, Protein of unknown function (DUF3156)	NA|121aa|up_8|NZ_CP012992.1_1361558_1361921_-	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription]	NA|101aa|up_7|NZ_CP012992.1_1361921_1362224_-	pfam09907, HigB_toxin, HigB_toxin, RelE-like toxic component of a toxin-antitoxin system	NA|372aa|up_6|NZ_CP012992.1_1362307_1363423_-	cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII	NA|391aa|up_5|NZ_CP012992.1_1363439_1364612_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|228aa|up_4|NZ_CP012992.1_1364729_1365413_-	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|396aa|up_3|NZ_CP012992.1_1365838_1367026_+	TIGR03942, sulfatase_rSAM, anaerobic sulfatase-maturating enzyme	NA|578aa|up_2|NZ_CP012992.1_1367070_1368804_+	cd16025, PAS_like, Bacterial Arylsulfatase of Pseudomonas aeruginosa and related proteins	NA|259aa|up_1|NZ_CP012992.1_1368891_1369668_+	cd05233, SDR_c, classical (c) SDRs	NA|264aa|up_0|NZ_CP012992.1_1369693_1370485_+	pfam17409, MoaF_C, MoaF C-terminal domain	NA|318aa|down_0|NZ_CP012992.1_1371449_1372403_-	cd19081, AKR_AKR9C1, AKR9C family of aldo-keto reductase (AKR)	NA|259aa|down_1|NZ_CP012992.1_1372531_1373308_-	cd13703, PBP2_HisJ_LAO, Substrate binding domain of ABC-type histidine- and lysine/arginine/ornithine transporters; the type 2 periplasmic-binding protein fold	NA|393aa|down_2|NZ_CP012992.1_1373327_1374506_-	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|46aa|down_3|NZ_CP012992.1_1374721_1374859_-	NA	NA|42aa|down_4|NZ_CP012992.1_1374821_1374947_+	NA	NA|152aa|down_5|NZ_CP012992.1_1375011_1375467_-	pfam11776, RcnB, Nickel/cobalt transporter regulator	NA|130aa|down_6|NZ_CP012992.1_1375635_1376025_-	NA	NA|373aa|down_7|NZ_CP012992.1_1376296_1377415_+	cd01139, TroA_f, Periplasmic binding protein TroA_f	NA|343aa|down_8|NZ_CP012992.1_1377476_1378505_+	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism]	NA|266aa|down_9|NZ_CP012992.1_1378501_1379299_+	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
GCF_001456095.3_ASM145609v3	NZ_CP012992	Klebsiella pneumoniae strain KpN06 chromosome, complete genome	4	1697744-1697883	4	CRISPRCasFinder	no	DEDDh	cas3,csa3,DinG,WYL,DEDDh	Unclear	TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAG	50	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,WYL,DEDDh,RT	NA,NA	NA|428aa|up_9|NZ_CP012992.1_1687478_1688762_+	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase	NA|467aa|up_8|NZ_CP012992.1_1688911_1690312_+	PRK10197, PRK10197, GABA permease	NA|231aa|up_7|NZ_CP012992.1_1690357_1691050_+	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional	NA|133aa|up_6|NZ_CP012992.1_1691135_1691534_-	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|415aa|up_5|NZ_CP012992.1_1691591_1692836_-	PRK05077, frsA, esterase FrsA	NA|153aa|up_4|NZ_CP012992.1_1692941_1693400_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_3|NZ_CP012992.1_1693657_1695115_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|151aa|up_2|NZ_CP012992.1_1695157_1695610_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|352aa|up_1|NZ_CP012992.1_1695612_1696668_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|287aa|up_0|NZ_CP012992.1_1696827_1697688_+	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins	NA|72aa|down_0|NZ_CP012992.1_1697910_1698126_-	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|408aa|down_1|NZ_CP012992.1_1698128_1699352_-	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional	NA|199aa|down_2|NZ_CP012992.1_1699364_1699961_-	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional	NA|213aa|down_3|NZ_CP012992.1_1699967_1700606_-	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated	NA|265aa|down_4|NZ_CP012992.1_1700598_1701393_-	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional	NA|413aa|down_5|NZ_CP012992.1_1701385_1702624_-	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional	NA|448aa|down_6|NZ_CP012992.1_1702627_1703971_-	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional	NA|247aa|down_7|NZ_CP012992.1_1704382_1705123_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_8|NZ_CP012992.1_1705093_1705861_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|194aa|down_9|NZ_CP012992.1_1705935_1706517_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase
GCF_001456095.3_ASM145609v3	NZ_CP012992	Klebsiella pneumoniae strain KpN06 chromosome, complete genome	5	2046718-2046852	5	CRISPRCasFinder	no		cas3,csa3,DinG,WYL,DEDDh	Orphan	GTTCGGTAGCCCGGCTAAGCGTAGCGCAAGCCGGGGGATGTCCCGG	46	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,WYL,DEDDh,RT	NA|60aa|up_1|NZ_CP012992.1_2045218_2045398_+,NA|117aa|down_1|NZ_CP012992.1_2047857_2048208_-,NA|110aa|down_2|NZ_CP012992.1_2048158_2048488_-	NA|279aa|up_9|NZ_CP012992.1_2037925_2038762_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|178aa|up_8|NZ_CP012992.1_2038794_2039328_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|288aa|up_7|NZ_CP012992.1_2039397_2040261_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|200aa|up_6|NZ_CP012992.1_2040257_2040857_-	PRK09140, PRK09140, 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed	NA|291aa|up_5|NZ_CP012992.1_2040843_2041716_-	pfam05035, DGOK, 2-keto-3-deoxy-galactonokinase	NA|496aa|up_4|NZ_CP012992.1_2041725_2043213_-	cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain	NA|131aa|up_3|NZ_CP012992.1_2043398_2043791_-	cd00448, YjgF_YER057c_UK114_family, YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|480aa|up_2|NZ_CP012992.1_2043801_2045241_-	cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics	NA|60aa|up_1|NZ_CP012992.1_2045218_2045398_+	NA	NA|407aa|up_0|NZ_CP012992.1_2045441_2046662_+	cd06818, PLPDE_III_cryptic_DSD, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase	NA|339aa|down_0|NZ_CP012992.1_2046869_2047886_-	pfam02615, Ldh_2, Malate/L-lactate dehydrogenase	NA|117aa|down_1|NZ_CP012992.1_2047857_2048208_-	NA	NA|110aa|down_2|NZ_CP012992.1_2048158_2048488_-	NA	NA|147aa|down_3|NZ_CP012992.1_2048450_2048891_-	TIGR02337, Homoprotocatechuate_degradative_operon_repressor	NA|211aa|down_4|NZ_CP012992.1_2049177_2049810_+	PRK15203, PRK15203, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional	NA|255aa|down_5|NZ_CP012992.1_2049806_2050571_+	PRK15203, PRK15203, 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional	NA|489aa|down_6|NZ_CP012992.1_2050567_2052034_+	cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8 member A1-like	NA|286aa|down_7|NZ_CP012992.1_2052035_2052893_+	TIGR02298, putative_34-dihydroxyphenylacetate_23-dioxygenase, 3,4-dihydroxyphenylacetate 2,3-dioxygenase	NA|127aa|down_8|NZ_CP012992.1_2052902_2053283_+	PRK15031, PRK15031, 5-carboxymethyl-2-hydroxymuconate Delta-isomerase	NA|268aa|down_9|NZ_CP012992.1_2053391_2054195_+	TIGR02312, 2-keto-4-pentenoate_hydratase, 2-oxo-hepta-3-ene-1,7-dioic acid hydratase
GCF_001456095.3_ASM145609v3	NZ_CP012992	Klebsiella pneumoniae strain KpN06 chromosome, complete genome	6	4207970-4208065	6	CRISPRCasFinder	no		cas3,csa3,DinG,WYL,DEDDh	Orphan	TTGTGCCAACAGAATGCCAACAAAGTGCCA	30	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,WYL,DEDDh,RT	NA|95aa|up_6|NZ_CP012992.1_4205028_4205313_-,NA|65aa|up_5|NZ_CP012992.1_4205401_4205596_-,NA|42aa|up_4|NZ_CP012992.1_4205588_4205714_-,NA|49aa|up_0|NZ_CP012992.1_4207436_4207583_+,NA|71aa|down_5|NZ_CP012992.1_4211470_4211683_+	NA|53aa|up_9|NZ_CP012992.1_4203335_4203494_-	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|227aa|up_8|NZ_CP012992.1_4203490_4204171_-	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|282aa|up_7|NZ_CP012992.1_4204167_4205013_-	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet	NA|95aa|up_6|NZ_CP012992.1_4205028_4205313_-	NA	NA|65aa|up_5|NZ_CP012992.1_4205401_4205596_-	NA	NA|42aa|up_4|NZ_CP012992.1_4205588_4205714_-	NA	NA|211aa|up_3|NZ_CP012992.1_4206032_4206665_-	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|72aa|up_2|NZ_CP012992.1_4206764_4206980_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|107aa|up_1|NZ_CP012992.1_4207029_4207350_+	pfam05269, Phage_CII, Bacteriophage CII protein	NA|49aa|up_0|NZ_CP012992.1_4207436_4207583_+	NA	NA|472aa|down_0|NZ_CP012992.1_4208479_4209895_+	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily	NA|101aa|down_1|NZ_CP012992.1_4209894_4210197_+	pfam12802, MarR_2, MarR family	NA|145aa|down_2|NZ_CP012992.1_4210193_4210628_+	pfam17593, DUF5490, Family of unknown function (DUF5490)	NA|87aa|down_3|NZ_CP012992.1_4210624_4210885_+	pfam15944, DUF4752, Domain of unknown function (DUF4752)	NA|160aa|down_4|NZ_CP012992.1_4210991_4211471_+	pfam13935, Ead_Ea22, Ead/Ea22-like protein	NA|71aa|down_5|NZ_CP012992.1_4211470_4211683_+	NA	NA|211aa|down_6|NZ_CP012992.1_4211679_4212312_+	pfam04448, DUF551, Protein of unknown function (DUF551)	NA|118aa|down_7|NZ_CP012992.1_4212690_4213044_+	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	NA|152aa|down_8|NZ_CP012992.1_4213398_4213854_+	PRK09741, PRK09741, hypothetical protein; Provisional	NA|57aa|down_9|NZ_CP012992.1_4213853_4214024_+	PRK09689, PRK09689, prophage protein NinE; Provisional
