assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001456215.1_ASM145621v1	NZ_CP009828	Staphylococcus aureus strain MS4 chromosome, complete genome	1	658079-658186	1	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CAACTGCATAAGAGCCCCTAATCGCTAAAGCTCAAGGGG	39	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|39aa|up_8|NZ_CP009828.1_648836_648953_+,NA|169aa|down_5|NZ_CP009828.1_662711_663218_+,NA|239aa|down_6|NZ_CP009828.1_663379_664096_+	NA|210aa|up_9|NZ_CP009828.1_648150_648780_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|39aa|up_8|NZ_CP009828.1_648836_648953_+	NA	NA|313aa|up_7|NZ_CP009828.1_649867_650806_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_6|NZ_CP009828.1_651015_651552_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_5|NZ_CP009828.1_651721_652198_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_4|NZ_CP009828.1_652237_653533_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_3|NZ_CP009828.1_653560_654082_+	pfam08741, YwhD, YwhD family	NA|337aa|up_2|NZ_CP009828.1_654580_655591_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|128aa|up_1|NZ_CP009828.1_655898_656282_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_0|NZ_CP009828.1_656278_657940_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|down_0|NZ_CP009828.1_658205_658841_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_1|NZ_CP009828.1_659089_659917_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_2|NZ_CP009828.1_660067_661018_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_3|NZ_CP009828.1_661072_661792_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_4|NZ_CP009828.1_661775_662576_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_5|NZ_CP009828.1_662711_663218_+	NA	NA|239aa|down_6|NZ_CP009828.1_663379_664096_+	NA	NA|263aa|down_7|NZ_CP009828.1_664263_665052_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_8|NZ_CP009828.1_665304_665679_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_9|NZ_CP009828.1_666626_667556_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_001456215.1_ASM145621v1	NZ_CP009828	Staphylococcus aureus strain MS4 chromosome, complete genome	2	774570-774655	2	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CAATGCGAGTTGGGGTGGGGCCCCAACA	28	1	1	774598-774627	NZ_CP009828.1_815669-815640	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|69aa|up_9|NZ_CP009828.1_761413_761620_+,NA|34aa|down_1|NZ_CP009828.1_776098_776200_+,NA|52aa|down_8|NZ_CP009828.1_784364_784520_+	NA|69aa|up_9|NZ_CP009828.1_761413_761620_+	NA	NA|237aa|up_8|NZ_CP009828.1_761716_762427_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NZ_CP009828.1_762410_763415_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NZ_CP009828.1_763888_765829_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NZ_CP009828.1_766099_767983_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NZ_CP009828.1_767994_769776_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NZ_CP009828.1_769997_770975_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_CP009828.1_770967_772482_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_CP009828.1_772721_773780_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_CP009828.1_773938_774481_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NZ_CP009828.1_775088_776006_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NZ_CP009828.1_776098_776200_+	NA	NA|502aa|down_2|NZ_CP009828.1_776277_777783_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NZ_CP009828.1_778122_778623_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NZ_CP009828.1_778642_779509_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NZ_CP009828.1_780309_780708_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NZ_CP009828.1_780670_782776_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NZ_CP009828.1_782893_783865_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NZ_CP009828.1_784364_784520_+	NA	NA|324aa|down_9|NZ_CP009828.1_784558_785530_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_001456215.1_ASM145621v1	NZ_CP009828	Staphylococcus aureus strain MS4 chromosome, complete genome	3	951822-951979	1,3	PILER-CR,CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CCAACTTGCATTGCTTGTAGAATCTCTTTTCGAAATTCT,TCTTTTCGAAATTCTCTGTGTTGGGGCCC	39,29	1	10	951929-951947|951929-951947|951929-951947|951929-951947|951929-951947|951929-951947|951929-951947|951929-951947|951929-951947|951929-951947	NZ_CP009828.1_820985-821003|NZ_CP009828.1_830154-830172|NZ_CP009828.1_1292154-1292172|NZ_CP009828.1_2236997-2236979|NZ_CP009828.1_183693-183711|NZ_CP009828.1_621980-621962|NZ_CP009828.1_931656-931638|NZ_CP009828.1_1150584-1150566|NZ_CP009828.1_1366733-1366751|NZ_CP009828.1_1747693-1747711	NA:NA	2,1	2	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA,NA	NA|192aa|up_9|NZ_CP009828.1_938260_938836_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|up_8|NZ_CP009828.1_938840_939365_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_7|NZ_CP009828.1_939380_939956_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|up_6|NZ_CP009828.1_940115_943592_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|up_5|NZ_CP009828.1_943592_947246_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|up_4|NZ_CP009828.1_947411_948314_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|130aa|up_3|NZ_CP009828.1_948641_949031_+	PRK13673, PRK13673, hypothetical protein; Provisional	NA|439aa|up_2|NZ_CP009828.1_949202_950519_-	PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional	NA|275aa|up_1|NZ_CP009828.1_950570_951395_-	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|103aa|up_0|NZ_CP009828.1_951508_951817_+	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|605aa|down_0|NZ_CP009828.1_952470_954285_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|870aa|down_1|NZ_CP009828.1_954487_957097_+	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|290aa|down_2|NZ_CP009828.1_957155_958025_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|382aa|down_3|NZ_CP009828.1_958134_959280_+	COG0119, LeuA, Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]	NA|214aa|down_4|NZ_CP009828.1_959263_959905_+	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|172aa|down_5|NZ_CP009828.1_960999_961515_+	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|145aa|down_6|NZ_CP009828.1_961825_962260_+	pfam03642, MAP, MAP domain	NA|62aa|down_7|NZ_CP009828.1_962516_962702_-	pfam11151, DUF2929, Protein of unknown function (DUF2929)	NA|314aa|down_8|NZ_CP009828.1_962996_963938_+	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3	NA|415aa|down_9|NZ_CP009828.1_963949_965194_+	TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II
GCF_001456215.1_ASM145621v1	NZ_CP009828	Staphylococcus aureus strain MS4 chromosome, complete genome	4	1070348-1070440	4	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	AAAAGCCCCTAACAACTAAAGGTTGTAAGG	30	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA,NA|45aa|down_0|NZ_CP009828.1_1070449_1070584_-,NA|432aa|down_1|NZ_CP009828.1_1070735_1072031_+	NA|224aa|up_9|NZ_CP009828.1_1058142_1058814_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_8|NZ_CP009828.1_1058806_1060996_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_7|NZ_CP009828.1_1060974_1062459_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_6|NZ_CP009828.1_1062451_1063480_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|NZ_CP009828.1_1063482_1064049_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|NZ_CP009828.1_1064063_1065542_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|NZ_CP009828.1_1065563_1066811_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_2|NZ_CP009828.1_1067076_1067883_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_1|NZ_CP009828.1_1067875_1069276_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|NZ_CP009828.1_1069290_1069866_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|NZ_CP009828.1_1070449_1070584_-	NA	NA|432aa|down_1|NZ_CP009828.1_1070735_1072031_+	NA	NA|181aa|down_2|NZ_CP009828.1_1073676_1074219_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_3|NZ_CP009828.1_1074372_1074639_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_4|NZ_CP009828.1_1074641_1076360_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_5|NZ_CP009828.1_1076596_1076830_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_6|NZ_CP009828.1_1077027_1078389_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_7|NZ_CP009828.1_1078385_1079405_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_8|NZ_CP009828.1_1079537_1080200_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|566aa|down_9|NZ_CP009828.1_1080313_1082011_-	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
GCF_001456215.1_ASM145621v1	NZ_CP009828	Staphylococcus aureus strain MS4 chromosome, complete genome	5	1154581-1154832	2	PILER-CR	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	TGCAAGTTGGCGGGGCCCCAACATAG	26	4	18	1154607-1154636|1154607-1154636|1154607-1154636|1154607-1154636|1154607-1154636|1154607-1154636|1154607-1154636|1154607-1154636|1154663-1154692|1154719-1154758|1154719-1154758|1154719-1154758|1154719-1154758|1154719-1154758|1154719-1154758|1154719-1154758|1154719-1154758|1154785-1154814	NZ_CP009828.1_830153-830124|NZ_CP009828.1_1054181-1054152|NZ_CP009828.1_1712635-1712606|NZ_CP009828.1_2703288-2703259|NZ_CP009828.1_820928-820899|NZ_CP009828.1_886769-886798|NZ_CP009828.1_1150699-1150728|NZ_CP009828.1_1727937-1727966|NZ_CP009828.1_784047-784076|NZ_CP009828.1_784047-784086|NZ_CP009828.1_183692-183653|NZ_CP009828.1_621981-622020|NZ_CP009828.1_784103-784142|NZ_CP009828.1_830039-830000|NZ_CP009828.1_1154833-1154872|NZ_CP009828.1_2202770-2202731|NZ_CP009828.1_2237053-2237092|NZ_CP009828.1_830095-830066	NA	4	4	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|169aa|up_7|NZ_CP009828.1_1148422_1148929_+,NA|62aa|up_4|NZ_CP009828.1_1150904_1151090_-,NA|78aa|up_3|NZ_CP009828.1_1151708_1151942_-,NA|49aa|up_1|NZ_CP009828.1_1154050_1154197_+,NA|75aa|up_0|NZ_CP009828.1_1154153_1154378_+,NA|76aa|down_6|NZ_CP009828.1_1161845_1162073_+	NA|110aa|up_9|NZ_CP009828.1_1146654_1146984_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|133aa|up_8|NZ_CP009828.1_1147353_1147752_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_7|NZ_CP009828.1_1148422_1148929_+	NA	NA|166aa|up_6|NZ_CP009828.1_1149187_1149685_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_5|NZ_CP009828.1_1149838_1150189_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_4|NZ_CP009828.1_1150904_1151090_-	NA	NA|78aa|up_3|NZ_CP009828.1_1151708_1151942_-	NA	NA|320aa|up_2|NZ_CP009828.1_1152418_1153378_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|up_1|NZ_CP009828.1_1154050_1154197_+	NA	NA|75aa|up_0|NZ_CP009828.1_1154153_1154378_+	NA	NA|239aa|down_0|NZ_CP009828.1_1155047_1155764_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|NZ_CP009828.1_1155871_1156597_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_2|NZ_CP009828.1_1156691_1157417_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_3|NZ_CP009828.1_1157854_1158856_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_4|NZ_CP009828.1_1158878_1159811_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|497aa|down_5|NZ_CP009828.1_1160047_1161538_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_6|NZ_CP009828.1_1161845_1162073_+	NA	NA|316aa|down_7|NZ_CP009828.1_1162378_1163326_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_8|NZ_CP009828.1_1163575_1163764_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_9|NZ_CP009828.1_1164676_1164811_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCF_001456215.1_ASM145621v1	NZ_CP009828	Staphylococcus aureus strain MS4 chromosome, complete genome	6	1229445-1229537	5	CRISPRCasFinder	no	cas3	WYL,cas3,DEDDh,DinG,csa3	Unclear	TAAGAAACAGTAATCAATAAATTGATAACT	30	0	0	NA	NA	NA	1	1	Unclear	WYL,cas3,DEDDh,DinG,csa3	NA,NA	NA|215aa|up_9|NZ_CP009828.1_1219319_1219964_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|214aa|up_8|NZ_CP009828.1_1219970_1220612_+	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|63aa|up_7|NZ_CP009828.1_1220993_1221182_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|125aa|up_6|NZ_CP009828.1_1221624_1221999_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|549aa|up_5|NZ_CP009828.1_1222013_1223660_+	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	cas3|687aa|up_4|NZ_CP009828.1_1223849_1225910_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|191aa|up_3|NZ_CP009828.1_1226111_1226684_+	PRK04424, PRK04424, transcription factor FapR	NA|329aa|up_2|NZ_CP009828.1_1226688_1227675_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|309aa|up_1|NZ_CP009828.1_1227667_1228594_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|245aa|up_0|NZ_CP009828.1_1228586_1229321_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|78aa|down_0|NZ_CP009828.1_1229626_1229860_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|244aa|down_1|NZ_CP009828.1_1229975_1230707_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1189aa|down_2|NZ_CP009828.1_1230853_1234420_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|down_3|NZ_CP009828.1_1234419_1235670_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|down_4|NZ_CP009828.1_1235656_1235989_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|down_5|NZ_CP009828.1_1236014_1237382_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|down_6|NZ_CP009828.1_1237727_1238003_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|down_7|NZ_CP009828.1_1238190_1238694_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|down_8|NZ_CP009828.1_1238693_1239431_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|down_9|NZ_CP009828.1_1239533_1239884_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional
GCF_001456215.1_ASM145621v1	NZ_CP009828	Staphylococcus aureus strain MS4 chromosome, complete genome	7	1437446-1437525	6	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CCAACTTGCACATTATTGTAAGCTG	25	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|68aa|up_5|NZ_CP009828.1_1428926_1429130_-,NA	NA|379aa|up_9|NZ_CP009828.1_1423276_1424413_+	pfam05816, TelA, Toxic anion resistance protein (TelA)	NA|448aa|up_8|NZ_CP009828.1_1424486_1425830_-	COG1114, BrnQ, Branched-chain amino acid permeases [Amino acid transport and metabolism]	NA|629aa|up_7|NZ_CP009828.1_1426054_1427941_-	COG4548, NorD, Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]	NA|264aa|up_6|NZ_CP009828.1_1427954_1428746_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|68aa|up_5|NZ_CP009828.1_1428926_1429130_-	NA	NA|270aa|up_4|NZ_CP009828.1_1429158_1429968_-	cd08346, PcpA_N_like, N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins	NA|423aa|up_3|NZ_CP009828.1_1430547_1431816_-	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|933aa|up_2|NZ_CP009828.1_1431829_1434628_-	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|452aa|up_1|NZ_CP009828.1_1434916_1436272_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|220aa|up_0|NZ_CP009828.1_1436268_1436928_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|205aa|down_0|NZ_CP009828.1_1438069_1438684_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|357aa|down_1|NZ_CP009828.1_1438700_1439771_-	PRK12446, PRK12446, undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed	NA|170aa|down_2|NZ_CP009828.1_1439782_1440292_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|497aa|down_3|NZ_CP009828.1_1440691_1442182_-	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|74aa|down_4|NZ_CP009828.1_1442373_1442595_-	COG4479, COG4479, Uncharacterized protein conserved in bacteria [Function unknown]	NA|167aa|down_5|NZ_CP009828.1_1442594_1443095_-	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism]	NA|143aa|down_6|NZ_CP009828.1_1443106_1443535_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|178aa|down_7|NZ_CP009828.1_1443527_1444061_-	PRK13014, PRK13014, methionine sulfoxide reductase A; Provisional	NA|280aa|down_8|NZ_CP009828.1_1444150_1444990_-	TIGR00762, DegV, EDD domain protein, DegV family	NA|160aa|down_9|NZ_CP009828.1_1445004_1445484_-	pfam00186, DHFR_1, Dihydrofolate reductase
GCF_001456215.1_ASM145621v1	NZ_CP009828	Staphylococcus aureus strain MS4 chromosome, complete genome	8	2202676-2202760	7	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CCAACTTGCACATTATTGTATGCTGACTTT	30	1	2	2202706-2202730|2202706-2202730	NZ_CP009828.1_1922086-1922110|NZ_CP009828.1_2202762-2202786	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|55aa|up_9|NZ_CP009828.1_2193183_2193348_+,NA|106aa|up_8|NZ_CP009828.1_2193592_2193910_+,NA|84aa|up_5|NZ_CP009828.1_2199034_2199286_+,NA|57aa|up_0|NZ_CP009828.1_2202426_2202597_+,NA	NA|55aa|up_9|NZ_CP009828.1_2193183_2193348_+	NA	NA|106aa|up_8|NZ_CP009828.1_2193592_2193910_+	NA	NA|1056aa|up_7|NZ_CP009828.1_2194096_2197264_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP009828.1_2197380_2198646_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP009828.1_2199034_2199286_+	NA	NA|255aa|up_4|NZ_CP009828.1_2199277_2200042_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP009828.1_2200204_2200645_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP009828.1_2200637_2201849_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP009828.1_2201950_2202301_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP009828.1_2202426_2202597_+	NA	NA|341aa|down_0|NZ_CP009828.1_2202937_2203960_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP009828.1_2203979_2204579_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP009828.1_2204585_2204819_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP009828.1_2204824_2205271_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP009828.1_2205284_2205770_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP009828.1_2205766_2207026_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP009828.1_2207088_2207583_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP009828.1_2207584_2208091_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP009828.1_2208121_2209126_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP009828.1_2209294_2209900_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_001456215.1_ASM145621v1	NZ_CP009828	Staphylococcus aureus strain MS4 chromosome, complete genome	9	2357302-2357394	8	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	TTCTTCAAATTTATTTGTTAGAAAG	25	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|35aa|up_2|NZ_CP009828.1_2354955_2355060_+,NA|32aa|down_0|NZ_CP009828.1_2357598_2357694_-	NA|200aa|up_9|NZ_CP009828.1_2348432_2349032_-	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|121aa|up_8|NZ_CP009828.1_2349050_2349413_-	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|417aa|up_7|NZ_CP009828.1_2349667_2350918_+	pfam02388, FemAB, FemAB family	NA|244aa|up_6|NZ_CP009828.1_2351014_2351746_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|240aa|up_5|NZ_CP009828.1_2351742_2352462_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|260aa|up_4|NZ_CP009828.1_2352442_2353222_-	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|480aa|up_3|NZ_CP009828.1_2353342_2354782_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|35aa|up_2|NZ_CP009828.1_2354955_2355060_+	NA	NA|229aa|up_1|NZ_CP009828.1_2355213_2355900_-	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|289aa|up_0|NZ_CP009828.1_2356225_2357092_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|32aa|down_0|NZ_CP009828.1_2357598_2357694_-	NA	NA|437aa|down_1|NZ_CP009828.1_2357788_2359099_+	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|310aa|down_2|NZ_CP009828.1_2359590_2360520_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|316aa|down_3|NZ_CP009828.1_2361087_2362035_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|326aa|down_4|NZ_CP009828.1_2362036_2363014_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|156aa|down_5|NZ_CP009828.1_2363065_2363533_-	pfam06177, QueT, QueT transporter	NA|231aa|down_6|NZ_CP009828.1_2363543_2364236_-	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|372aa|down_7|NZ_CP009828.1_2364246_2365362_-	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|336aa|down_8|NZ_CP009828.1_2365339_2366347_-	PRK06256, PRK06256, biotin synthase; Validated	NA|453aa|down_9|NZ_CP009828.1_2366348_2367707_-	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase
GCF_001456215.1_ASM145621v1	NZ_CP009828	Staphylococcus aureus strain MS4 chromosome, complete genome	10	2703193-2703278	9	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	10	2703223-2703248|2703223-2703248|2703223-2703248|2703223-2703248|2703223-2703248|2703223-2703248|2703223-2703248|2703223-2703248|2703223-2703248|2703223-2703248	NZ_CP009828.1_1154842-1154817|NZ_CP009828.1_1292087-1292112|NZ_CP009828.1_784056-784031|NZ_CP009828.1_784112-784087|NZ_CP009828.1_830030-830055|NZ_CP009828.1_1893265-1893240|NZ_CP009828.1_2120301-2120326|NZ_CP009828.1_2237062-2237037|NZ_CP009828.1_2040987-2040962|NZ_CP009828.1_2041325-2041300	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|47aa|up_9|NZ_CP009828.1_2695010_2695151_+,NA|64aa|up_6|NZ_CP009828.1_2698670_2698862_+,NA|166aa|up_5|NZ_CP009828.1_2699468_2699966_-,NA|64aa|up_4|NZ_CP009828.1_2700422_2700614_+,NA	NA|47aa|up_9|NZ_CP009828.1_2695010_2695151_+	NA	NA|171aa|up_8|NZ_CP009828.1_2695147_2695660_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|253aa|up_7|NZ_CP009828.1_2695949_2696708_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|64aa|up_6|NZ_CP009828.1_2698670_2698862_+	NA	NA|166aa|up_5|NZ_CP009828.1_2699468_2699966_-	NA	NA|64aa|up_4|NZ_CP009828.1_2700422_2700614_+	NA	NA|67aa|up_3|NZ_CP009828.1_2701005_2701206_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|190aa|up_2|NZ_CP009828.1_2701332_2701902_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|132aa|up_1|NZ_CP009828.1_2702152_2702548_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|118aa|up_0|NZ_CP009828.1_2702615_2702969_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|280aa|down_0|NZ_CP009828.1_2703578_2704418_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|240aa|down_1|NZ_CP009828.1_2704460_2705180_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|626aa|down_2|NZ_CP009828.1_2705179_2707057_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|460aa|down_3|NZ_CP009828.1_2707123_2708503_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|118aa|down_4|NZ_CP009828.1_2708646_2709000_-	PRK00499, rnpA, ribonuclease P; Reviewed	NA|46aa|down_5|NZ_CP009828.1_2709120_2709258_-	pfam00468, Ribosomal_L34, Ribosomal protein L34	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
