The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LN831035	Haemophilus influenzae strain NCTC8143 chromosome 1	1890645	626875	698257	1890645	protease,terminase,integrase,tail,portal,tRNA	Mannheimia_phage(11.11%)	83	638177:638194	663590:663607
WP_058222171.1|626875_627460_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_058222172.1|627507_628599_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_011961709.1|630577_631720_-	ribonuclease D	NA	U3REX2	uncultured_virus	30.8	9.2e-08
WP_011961710.1|631775_633464_-	long-chain-fatty-acid--CoA ligase FadD	NA	A0A2H4PQM9	Staphylococcus_phage	26.0	6.7e-31
WP_005686834.1|633506_634058_-	Slp family lipoprotein	NA	NA	NA	NA	NA
WP_058222173.1|634082_634793_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
WP_011961712.1|634805_636728_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	33.2	8.6e-99
WP_005649192.1|637054_637465_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_005649191.1|637481_638168_+	protein TolQ	NA	NA	NA	NA	NA
638177:638194	attL	AAAATTGACCGCACTTTG	NA	NA	NA	NA
WP_011961713.1|638238_638658_+	colicin uptake protein TolR	NA	NA	NA	NA	NA
WP_058222174.1|638673_639948_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_011272014.1|639989_641273_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_005652235.1|641296_641758_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_050845889.1|642191_643217_-|integrase	site-specific integrase	integrase	K7PKD7	Enterobacteria_phage	35.4	4.3e-57
WP_005651299.1|643114_643429_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005668273.1|643555_643843_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005668271.1|643846_644116_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005668266.1|644380_644914_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005651292.1|644985_645402_-	hypothetical protein	NA	E5EYK4	Acinetobacter_phage	35.9	1.1e-08
WP_038440643.1|645405_646059_-	hypothetical protein	NA	A0A0M3LNU4	Mannheimia_phage	35.1	1.9e-05
WP_038440645.1|646109_647273_-	DNA cytosine methyltransferase	NA	A0A2I7RFJ9	Vibrio_phage	46.4	7.5e-90
WP_038440647.1|647280_647640_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005668254.1|647636_647882_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038440649.1|647878_648775_-	recombination-associated protein RdgC	NA	S4TWL4	Salmonella_phage	43.7	8.4e-57
WP_058222175.1|648899_649976_-	hypothetical protein	NA	A0A0U3TGV3	Pseudomonas_phage	61.9	7.3e-07
WP_042599564.1|650470_651121_-	translocation protein TolB precursor	NA	A0A0M3LP90	Mannheimia_phage	70.6	5.8e-84
WP_042599563.1|651095_652043_-	hypothetical protein	NA	A0A2H4JAZ0	uncultured_Caudovirales_phage	66.2	3.2e-83
WP_042599562.1|652055_652349_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005651091.1|652345_652690_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005651093.1|652703_653441_-	site-specific DNA-methyltransferase	NA	A0A0E3U2R2	Fusobacterium_phage	77.5	5.2e-113
WP_012054990.1|653531_654563_-	HNH endonuclease	NA	D0UIK6	Aggregatibacter_phage	82.8	5.2e-42
WP_005688811.1|654552_654804_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005668691.1|654935_655094_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005688815.1|655420_655642_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005655314.1|655656_655827_+	DUF1508 domain-containing protein	NA	NA	NA	NA	NA
WP_162877571.1|656187_656355_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038440670.1|656382_657231_-	DUF3800 domain-containing protein	NA	A5X9G9	Aeromonas_virus	43.7	3.6e-57
WP_038440672.1|657505_658207_-	helix-turn-helix transcriptional regulator	NA	G8C7U1	Escherichia_phage	33.6	1.9e-24
WP_038440673.1|658355_658571_+	helix-turn-helix domain-containing protein	NA	Q19UN8	Mannheimia_phage	52.9	1.2e-09
WP_058222176.1|659348_660107_+	helix-turn-helix domain-containing protein	NA	D0UIL5	Aggregatibacter_phage	62.0	1.7e-63
WP_038440679.1|660091_660727_+	replication P	NA	A0A1I9KFB0	Aeromonas_phage	24.7	4.8e-06
WP_005633909.1|660723_660948_+	hypothetical protein	NA	A0A0M3LR43	Mannheimia_phage	47.9	1.1e-10
WP_038440680.1|660984_661404_+	recombination protein NinB	NA	Q7Y5V7	Haemophilus_phage	86.2	1.9e-64
WP_038440682.1|661492_662029_+	recombination protein NinG	NA	D0UIK8	Aggregatibacter_phage	68.6	7.0e-59
WP_005651339.1|662037_662556_+	antitermination protein	NA	G8C7V7	Escherichia_phage	34.0	3.4e-18
WP_005688862.1|662816_663068_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005654589.1|663048_663591_+	lysozyme	NA	A0A0M3LPQ1	Mannheimia_phage	51.4	9.0e-46
WP_048940722.1|663563_663899_+	DUF2570 family protein	NA	Q7Y5U9	Haemophilus_phage	50.0	1.9e-17
663590:663607	attR	AAAATTGACCGCACTTTG	NA	NA	NA	NA
WP_042599556.1|663810_664092_+	hypothetical protein	NA	Q776X1	Haemophilus_phage	73.3	1.6e-30
WP_005668561.1|664360_664834_+	DUF1441 family protein	NA	K7PJY2	Enterobacterial_phage	53.0	1.9e-39
WP_058222177.1|664836_666960_+|terminase	phage terminase large subunit family protein	terminase	K7PH52	Enterobacterial_phage	67.1	5.6e-277
WP_048950252.1|667195_668719_+|portal	phage portal protein	portal	S5MW34	Escherichia_phage	57.5	2.7e-156
WP_172644167.1|668654_670697_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A1W6JT88	Pseudomonas_phage	56.9	2.6e-202
WP_015701510.1|670775_671099_+	DUF2190 family protein	NA	NA	NA	NA	NA
WP_015701509.1|671079_671391_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015701508.1|671393_671924_+|tail	phage tail protein	tail	K7PKQ5	Enterobacteria_phage	50.0	2.7e-18
WP_038440699.1|671932_672343_+|tail	phage tail protein	tail	NA	NA	NA	NA
WP_050846007.1|672345_672996_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038440705.1|673270_673678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_058222178.1|673722_673950_+	DUF4035 domain-containing protein	NA	NA	NA	NA	NA
WP_015701504.1|674018_674402_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_005651224.1|674385_674688_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_101494098.1|674703_674940_+	hypothetical protein	NA	NA	NA	NA	NA
WP_058222179.1|674991_678384_+	tape measure protein	NA	A0A2P1CKJ3	Pantoea_phage	24.1	1.2e-39
WP_038440713.1|678392_678725_+|tail	phage tail protein	tail	H6WZM2	Escherichia_phage	38.5	2.7e-16
WP_005651234.1|678816_678975_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050846004.1|679234_680386_+	type I restriction enzyme HsdR N-terminal domain-containing protein	NA	A0A1S5SAB0	Streptococcus_phage	30.1	6.8e-35
WP_058222180.1|680695_681586_+	antirepressor	NA	D0UIK6	Aggregatibacter_phage	55.5	1.2e-82
WP_058222181.1|682002_682521_+	antirepressor	NA	G0ZNF0	Cronobacter_phage	49.2	1.3e-30
WP_058222182.1|682564_683215_+|tail	phage minor tail protein L	tail	Q6JIL5	Burkholderia_virus	39.6	1.9e-34
WP_058222183.1|683216_683924_+	C40 family peptidase	NA	A0A1B1IV85	uncultured_Mediterranean_phage	43.2	3.4e-53
WP_058222184.1|684585_688236_+|tail	phage tail protein	tail	A0A0R6PIC9	Moraxella_phage	37.4	4.5e-141
WP_038441442.1|688432_690055_+|tail	tail fiber protein	tail	Q94MY0	Haemophilus_virus	63.7	4.5e-210
WP_038440732.1|690066_690669_+	hypothetical protein	NA	Q94MX9	Haemophilus_virus	93.0	1.6e-96
WP_013525579.1|690665_691124_+	hypothetical protein	NA	F6MIM0	Haemophilus_phage	55.8	4.9e-45
WP_005654873.1|691772_692498_+|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	tRNA	NA	NA	NA	NA
WP_005654871.1|692550_693003_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_005649169.1|693069_694284_+	IscS subfamily cysteine desulfurase	NA	H7BUW1	unidentified_phage	35.5	1.5e-32
WP_005654861.1|694343_694724_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	80.6	1.4e-53
WP_005649164.1|694781_695105_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	46.7	4.4e-24
WP_011272012.1|695117_695642_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_005669116.1|695692_696379_+	DUF2625 domain-containing protein	NA	NA	NA	NA	NA
WP_011272011.1|696397_698257_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.3	2.3e-109
>prophage 2
NZ_LN831035	Haemophilus influenzae strain NCTC8143 chromosome 1	1890645	765335	769647	1890645		uncultured_virus(100.0%)	9	NA	NA
WP_005631184.1|765335_765542_+	heavy-metal-associated domain-containing protein	NA	A0A218MNH0	uncultured_virus	52.2	3.0e-10
WP_005686717.1|765616_765823_+	heavy-metal-associated domain-containing protein	NA	A0A218MNH0	uncultured_virus	50.7	6.7e-10
WP_005686717.1|765896_766103_+	heavy-metal-associated domain-containing protein	NA	A0A218MNH0	uncultured_virus	50.7	6.7e-10
WP_005631184.1|766176_766383_+	heavy-metal-associated domain-containing protein	NA	A0A218MNH0	uncultured_virus	52.2	3.0e-10
WP_005686717.1|766457_766664_+	heavy-metal-associated domain-containing protein	NA	A0A218MNH0	uncultured_virus	50.7	6.7e-10
WP_005686717.1|766737_766944_+	heavy-metal-associated domain-containing protein	NA	A0A218MNH0	uncultured_virus	50.7	6.7e-10
WP_005686717.1|767017_767224_+	heavy-metal-associated domain-containing protein	NA	A0A218MNH0	uncultured_virus	50.7	6.7e-10
WP_005686717.1|767297_767504_+	heavy-metal-associated domain-containing protein	NA	A0A218MNH0	uncultured_virus	50.7	6.7e-10
WP_038440794.1|767478_769647_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	52.0	2.5e-195
>prophage 3
NZ_LN831035	Haemophilus influenzae strain NCTC8143 chromosome 1	1890645	1010759	1055698	1890645	protease,capsid,terminase,integrase,tail,plate,transposase,tRNA,head	Haemophilus_phage(53.49%)	55	1016107:1016125	1063162:1063180
WP_005661152.1|1010759_1011755_+	2-hydroxyacid dehydrogenase	NA	M1H502	Paramecium_bursaria_Chlorella_virus	39.3	1.1e-65
WP_005689970.1|1011874_1012198_+	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	42.4	9.8e-16
WP_038440942.1|1012611_1013400_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_011271820.1|1013541_1013973_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA	NA
WP_011271819.1|1013976_1014486_-	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	32.9	5.5e-13
WP_011271818.1|1014588_1015968_+|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	29.7	8.7e-53
1016107:1016125	attL	AAGTGCGGTCATTTTTTCT	NA	NA	NA	NA
WP_005659422.1|1016956_1017670_-	helix-turn-helix domain-containing protein	NA	F6MII3	Haemophilus_phage	43.2	5.7e-40
WP_032827525.1|1017868_1018132_+	helix-turn-helix domain-containing protein	NA	F6MII4	Haemophilus_phage	73.6	1.7e-29
WP_058222194.1|1018146_1020114_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	F6MII5	Haemophilus_phage	60.7	1.6e-230
WP_080358742.1|1020106_1020523_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005641538.1|1020574_1021456_+	AAA family ATPase	NA	A0A0M3LP72	Mannheimia_phage	64.7	2.5e-98
WP_050845923.1|1021466_1021763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005647090.1|1021771_1021963_+	HTH domain-containing protein	NA	F6MII8	Haemophilus_phage	57.6	9.5e-11
WP_032823840.1|1021963_1022581_+	DUF3164 family protein	NA	A0A0M3LQ92	Mannheimia_phage	59.6	3.6e-67
WP_042611660.1|1022764_1023325_+	DUF5420 family protein	NA	A0A0M3LP85	Mannheimia_phage	25.9	2.5e-14
WP_042611659.1|1023328_1023577_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042611658.1|1023686_1023926_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050845924.1|1023922_1024471_+	hypothetical protein	NA	A0A0M3LPP6	Mannheimia_phage	50.3	1.7e-47
WP_042611657.1|1024460_1024862_+	regulatory protein GemA	NA	A0A0M3LP80	Mannheimia_phage	43.8	2.4e-19
WP_042611656.1|1024915_1025815_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042611655.1|1025900_1026329_+	mor transcription activator family protein	NA	F6MIJ8	Haemophilus_phage	42.3	4.3e-27
WP_050845925.1|1026408_1026915_+	glycoside hydrolase family 108 protein	NA	A0A0M3LSH2	Mannheimia_phage	67.9	2.5e-58
WP_050845926.1|1027068_1027359_+	DUF2644 domain-containing protein	NA	F6MIK0	Haemophilus_phage	61.3	2.3e-16
WP_050845927.1|1027358_1027616_+	DUF2681 domain-containing protein	NA	NA	NA	NA	NA
WP_006995442.1|1027739_1027997_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006995441.1|1027996_1028263_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050845928.1|1028264_1028768_+	DUF1804 family protein	NA	F6MIK6	Haemophilus_phage	51.8	7.1e-45
WP_050845929.1|1028903_1030550_+|terminase	phage terminase large subunit	terminase	B7SDN0	Haemophilus_phage	78.0	1.7e-249
WP_050845930.1|1030561_1032184_+	DUF935 domain-containing protein	NA	B7SDN1	Haemophilus_phage	68.9	7.5e-205
WP_058222195.1|1032167_1033469_+|capsid	minor capsid protein	capsid	B7SDN5	Haemophilus_phage	70.0	2.1e-173
WP_005688555.1|1033604_1034021_+	phage virion morphogenesis protein	NA	B7SDN8	Haemophilus_phage	67.4	2.8e-47
WP_050845932.1|1034302_1035340_+|protease	phage protease	protease	B7SDN9	Haemophilus_phage	47.0	1.9e-68
WP_040034140.1|1035339_1036263_+|head	Mu-like prophage major head subunit gpT family protein	head	B7SDP1	Haemophilus_phage	74.9	7.9e-135
WP_050845933.1|1036326_1036632_+	hypothetical protein	NA	B7SDP3	Haemophilus_phage	50.0	9.6e-21
WP_050845934.1|1036641_1037073_+	DUF1320 domain-containing protein	NA	B7SDP4	Haemophilus_phage	60.9	4.6e-37
WP_050845935.1|1037056_1037719_+	DUF1834 family protein	NA	A0A0M3LQJ7	Mannheimia_phage	45.0	9.3e-45
WP_006995430.1|1037690_1037873_+	DUF2635 domain-containing protein	NA	A0A0M3LQM9	Mannheimia_phage	64.8	8.2e-12
WP_050845936.1|1037865_1039281_+|tail	phage tail sheath subtilisin-like domain-containing protein	tail	B7SDP8	Haemophilus_phage	62.2	2.5e-156
WP_021034875.1|1039290_1039662_+	hypothetical protein	NA	A0A0M3LRV6	Mannheimia_phage	65.0	1.2e-36
WP_050845937.1|1039661_1040003_+	hypothetical protein	NA	A0A0M3LSI2	Mannheimia_phage	49.5	5.3e-20
WP_021034873.1|1040017_1040224_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050845938.1|1040270_1042556_+|tail	phage tail tape measure protein	tail	A0A0M3LPB6	Mannheimia_phage	33.6	1.4e-92
WP_050845939.1|1042558_1043893_+	DNA circularization N-terminal domain-containing protein	NA	F6MIL2	Haemophilus_phage	44.7	3.5e-107
WP_050845940.1|1043882_1045007_+|tail	phage tail protein	tail	F6MIL3	Haemophilus_phage	71.5	2.3e-144
WP_050845941.1|1045016_1045652_+|plate	phage baseplate assembly protein V	plate	A0A0M3LPA3	Mannheimia_phage	58.7	1.2e-62
WP_032824912.1|1045721_1046072_+	phage GP46 family protein	NA	A0A0M3LQK5	Mannheimia_phage	75.0	1.4e-44
WP_050845942.1|1046086_1047151_+|plate	baseplate J/gp47 family protein	plate	F6MIL6	Haemophilus_phage	66.7	1.7e-128
WP_174507678.1|1047147_1047744_+	DUF2313 domain-containing protein	NA	F6MIL7	Haemophilus_phage	63.5	3.5e-67
WP_058222196.1|1047747_1049859_+|tail	tail fiber protein	tail	Q94MY0	Haemophilus_virus	70.5	1.3e-241
WP_050845944.1|1049870_1050473_+	hypothetical protein	NA	Q94MX9	Haemophilus_virus	93.0	9.5e-97
WP_050845945.1|1050469_1050970_+	hypothetical protein	NA	F6MIM0	Haemophilus_phage	64.3	2.7e-52
WP_005641687.1|1051144_1051264_+	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_050845946.1|1051325_1052171_+	hypothetical protein	NA	F6MIM2	Haemophilus_phage	72.5	2.5e-119
WP_050845947.1|1052209_1052473_-	hypothetical protein	NA	F6MIM3	Haemophilus_phage	77.9	5.0e-34
WP_042593635.1|1053574_1055698_-	anaerobic ribonucleoside-triphosphate reductase	NA	E5DPW8	Aeromonas_phage	62.0	6.2e-260
1063162:1063180	attR	AAGTGCGGTCATTTTTTCT	NA	NA	NA	NA
>prophage 4
NZ_LN831035	Haemophilus influenzae strain NCTC8143 chromosome 1	1890645	1300552	1390000	1890645	protease,lysis,capsid,holin,terminase,tail,plate,portal,tRNA,head	Mannheimia_phage(39.39%)	83	NA	NA
WP_011961904.1|1300552_1302523_+|tRNA	tRNA(Met) cytidine acetyltransferase	tRNA	NA	NA	NA	NA
WP_011272700.1|1302519_1302693_+	DUF5363 domain-containing protein	NA	NA	NA	NA	NA
WP_058222210.1|1302794_1306235_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_011272698.1|1306287_1307679_-|protease	DegQ family serine endoprotease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	31.2	7.2e-23
WP_005694317.1|1307872_1308763_+	acetyl-CoA carboxylase, carboxyltransferase subunit beta	NA	NA	NA	NA	NA
WP_038441072.1|1308764_1310069_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_005689857.1|1310356_1311037_-	vancomycin high temperature exclusion protein	NA	NA	NA	NA	NA
WP_005689855.1|1311194_1312271_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_005689853.1|1312325_1314968_-	DNA topoisomerase (ATP-hydrolyzing) subunit A	NA	G3M9Z5	Bacillus_virus	32.3	2.1e-103
WP_005687300.1|1315567_1317331_-	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA	NA
WP_005687298.1|1317467_1317944_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011272695.1|1318179_1318986_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_011272694.1|1319037_1319739_+	hydroxyacylglutathione hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	28.5	1.3e-07
WP_011272693.1|1319782_1320643_-	SAM-dependent methyltransferase TehB	NA	NA	NA	NA	NA
WP_038441076.1|1320753_1322802_-|tRNA	methionine--tRNA ligase	tRNA	A0A2K9V939	Bandra_megavirus	29.3	2.2e-60
WP_011272691.1|1322952_1324065_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_011272690.1|1324111_1324774_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011272689.1|1324887_1325562_+	N-acylneuraminate cytidylyltransferase	NA	NA	NA	NA	NA
WP_050845914.1|1326270_1327281_-|portal	phage portal protein	portal	Q19UT6	Mannheimia_phage	60.1	5.3e-116
WP_058222211.1|1327290_1329072_-|terminase	terminase	terminase	A0A0M3LRV4	Mannheimia_phage	65.6	3.8e-218
WP_058222212.1|1329236_1330052_+|capsid	GPO family capsid scaffolding protein	capsid	A0A0M3LNM2	Mannheimia_phage	61.0	4.0e-66
WP_058222213.1|1330073_1331123_+|capsid	phage major capsid protein, P2 family	capsid	Q19UT3	Mannheimia_phage	51.9	2.6e-89
WP_011272685.1|1331134_1331785_+|terminase	terminase	terminase	Q19US0	Mannheimia_phage	46.0	4.1e-45
WP_005668469.1|1332078_1332585_+|head	head completion/stabilization protein	head	A0A0M3LNL8	Mannheimia_phage	51.0	2.8e-33
WP_005668467.1|1332584_1332794_+|tail	tail protein X	tail	NA	NA	NA	NA
WP_005668464.1|1332795_1333017_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_005668462.1|1333009_1333528_+	lysozyme	NA	A0A0M3LPQ1	Mannheimia_phage	46.6	9.5e-37
WP_011272684.1|1333512_1333863_+	chemotaxis protein	NA	NA	NA	NA	NA
WP_005672208.1|1334037_1334253_+	TraR/DksA family transcriptional regulator	NA	A0A0M3LS11	Mannheimia_phage	47.9	1.1e-10
WP_038441087.1|1334249_1334513_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038441089.1|1334478_1334949_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	45.3	7.3e-28
WP_011272680.1|1334948_1335410_+	phage virion morphogenesis protein	NA	A0A2H4J927	uncultured_Caudovirales_phage	48.2	5.7e-25
WP_005653079.1|1335410_1335758_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011272679.1|1335861_1336044_+	phage virion morphogenesis protein	NA	Q19UR2	Mannheimia_phage	47.8	8.8e-06
WP_011272678.1|1336054_1336393_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075913143.1|1336468_1336642_+	phage virion morphogenesis protein	NA	Q19UR2	Mannheimia_phage	53.3	3.2e-05
WP_042593957.1|1336619_1336880_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162836930.1|1339832_1340000_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006995348.1|1339977_1340430_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011272674.1|1340527_1341085_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005653088.1|1341093_1341522_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011272673.1|1341625_1342225_+|plate	phage baseplate assembly protein V	plate	A0A0M3LPY9	Mannheimia_phage	66.0	4.2e-44
WP_005633786.1|1342226_1342565_+	GPW/gp25 family protein	NA	Q19UQ6	Mannheimia_phage	56.6	3.4e-19
WP_011272672.1|1342561_1343476_+|plate	baseplate J/gp47 family protein	plate	Q19UQ5	Mannheimia_phage	59.5	5.1e-94
WP_011272671.1|1343465_1344002_+|tail	phage tail protein I	tail	M1T2R2	Escherichia_phage	52.5	1.6e-50
WP_058222214.1|1344010_1346533_+|tail	phage tail protein	tail	Q94MY0	Haemophilus_virus	64.6	2.5e-239
WP_058222215.1|1346544_1347147_+	hypothetical protein	NA	Q94MX9	Haemophilus_virus	89.5	2.4e-92
WP_011272668.1|1347143_1347647_+	hypothetical protein	NA	F6MIM0	Haemophilus_phage	63.6	1.7e-51
WP_011272667.1|1347703_1348525_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005642880.1|1348538_1348907_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038441454.1|1348923_1350063_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011272665.1|1350072_1350600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011272664.1|1350603_1351368_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038441101.1|1353029_1353485_+	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_005631625.1|1353501_1354989_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_011272663.1|1355000_1357535_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	26.4	1.8e-27
WP_011272662.1|1357613_1360781_-	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	30.6	9.5e-79
WP_058222216.1|1360782_1361829_-	SIR2 family protein	NA	NA	NA	NA	NA
WP_011272660.1|1361821_1363087_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_011272659.1|1363079_1364750_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	30.5	1.4e-49
WP_005628626.1|1364914_1365301_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_058222217.1|1365300_1366221_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_011272657.1|1366310_1367435_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_011272656.1|1367467_1368307_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	38.9	6.1e-41
WP_038441106.1|1368433_1369219_-	Zn-ribbon-containing protein	NA	NA	NA	NA	NA
WP_050845983.1|1369209_1369590_-	SufE family protein	NA	NA	NA	NA	NA
WP_050845982.1|1369586_1370786_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	31.6	2.2e-60
WP_005694472.1|1370787_1371270_-	thermonuclease family protein	NA	A0A0R6PHV6	Moraxella_phage	47.7	1.2e-30
WP_005650310.1|1371384_1371807_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_005657449.1|1371825_1372521_+|lysis	CidB/LrgB family autolysis modulator	lysis	NA	NA	NA	NA
WP_162877566.1|1372643_1373999_+	dGTPase	NA	NA	NA	NA	NA
WP_044364264.1|1374092_1376036_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	29.8	3.2e-53
WP_044364263.1|1376116_1377199_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_038441113.1|1377329_1378100_-	spermidine/putrescine ABC transporter permease PotC	NA	NA	NA	NA	NA
WP_005650698.1|1378099_1378960_-	spermidine/putrescine ABC transporter permease PotB	NA	Q6GZ02	Mycoplasma_phage	28.2	4.5e-15
WP_005650696.1|1378943_1380062_-	spermidine/putrescine ABC transporter ATP-binding protein PotA	NA	Q6GZ03	Mycoplasma_phage	37.1	1.9e-29
WP_038441117.1|1380358_1381597_+	peptidase T	NA	NA	NA	NA	NA
WP_005650692.1|1382168_1382651_-	DNA starvation/stationary phase protection protein	NA	NA	NA	NA	NA
WP_005650690.1|1382924_1383803_+	cytidine deaminase	NA	NA	NA	NA	NA
WP_011272649.1|1383845_1384811_-|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	tRNA	NA	NA	NA	NA
WP_011272648.1|1384807_1386322_-	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_005694007.1|1386437_1387913_+	ribonuclease G	NA	NA	NA	NA	NA
WP_038441120.1|1388332_1390000_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	77.5	8.1e-255
>prophage 5
NZ_LN831035	Haemophilus influenzae strain NCTC8143 chromosome 1	1890645	1437043	1449124	1890645	tRNA	Acinetobacter_phage(42.86%)	10	NA	NA
WP_074031221.1|1437043_1438048_-	phosphate ABC transporter substrate-binding protein PstS	NA	A0A222YW41	Synechococcus_phage	40.5	1.2e-51
WP_005650594.1|1438565_1439054_+	non-heme ferritin	NA	NA	NA	NA	NA
WP_005656740.1|1439069_1439567_+	non-heme ferritin	NA	NA	NA	NA	NA
WP_005688459.1|1439847_1440612_+	glycosyltransferase	NA	A7IW34	Paramecium_bursaria_Chlorella_virus	29.1	1.5e-14
WP_005687196.1|1440713_1442270_+	anthranilate synthase component I	NA	A0A0B5J984	Pandoravirus	33.2	2.4e-22
WP_005687195.1|1442282_1442870_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	40.0	2.2e-34
WP_005662273.1|1442918_1443305_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_005687194.1|1443357_1444359_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	39.6	4.4e-46
WP_050846017.1|1444399_1445830_+	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	NA	A0A0P0IR83	Acinetobacter_phage	38.7	8.5e-35
WP_050846014.1|1446259_1449124_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.4	8.7e-148
>prophage 6
NZ_LN831035	Haemophilus influenzae strain NCTC8143 chromosome 1	1890645	1458313	1474582	1890645	capsid,terminase,holin	Haemophilus_phage(42.86%)	25	NA	NA
WP_005650554.1|1458313_1458490_-	DUF2213 domain-containing protein	NA	Q7Y5U2	Haemophilus_phage	93.1	8.5e-22
WP_075913359.1|1458630_1459941_-|capsid	minor capsid protein	capsid	Q7Y5U5	Haemophilus_phage	78.3	5.3e-108
WP_011272621.1|1459840_1461175_-	DUF1073 domain-containing protein	NA	Q7Y5U6	Haemophilus_phage	84.2	2.1e-213
WP_011272620.1|1461176_1462520_-|terminase	PBSX family phage terminase large subunit	terminase	A0A220NQL3	Acinetobacter_phage	54.4	2.8e-125
WP_011272619.1|1462506_1463019_-|terminase	terminase small subunit	terminase	A0A1X9SFE5	Acinetobacter_phage	39.2	1.0e-19
WP_011272618.1|1463063_1463342_+	helix-turn-helix transcriptional regulator	NA	A0A1S5NNJ5	Burkholderia_phage	66.2	6.5e-16
WP_005693951.1|1463343_1463625_-	hypothetical protein	NA	Q776X1	Haemophilus_phage	73.3	9.4e-31
WP_011272617.1|1463536_1463860_-	DUF2570 family protein	NA	Q7Y5U9	Haemophilus_phage	54.6	7.8e-21
WP_032826234.1|1463852_1464455_-	glycoside hydrolase family 19 protein	NA	Q7Y5V0	Haemophilus_phage	53.4	3.7e-56
WP_005650535.1|1464423_1464780_-|holin	phage holin, lambda family	holin	NA	NA	NA	NA
WP_015702297.1|1464903_1465041_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038441183.1|1465116_1465785_-	Bro-N domain-containing protein	NA	D0UIM5	Aggregatibacter_phage	62.3	6.7e-67
WP_005666914.1|1466142_1467108_+	hypothetical protein	NA	Q8HA04	Enterobacteria_phage	58.8	1.2e-88
WP_005650528.1|1467157_1467529_-	hypothetical protein	NA	NA	NA	NA	NA
WP_058222221.1|1467559_1468225_-	HNH endonuclease	NA	A0A2I7QND8	Vibrio_phage	44.1	2.9e-38
WP_042593421.1|1468854_1469271_-	recombination protein NinB	NA	Q7Y5V7	Haemophilus_phage	85.4	9.6e-64
WP_005633909.1|1469307_1469532_-	hypothetical protein	NA	A0A0M3LR43	Mannheimia_phage	47.9	1.1e-10
WP_038440679.1|1469528_1470164_-	replication P	NA	A0A1I9KFB0	Aeromonas_phage	24.7	4.8e-06
WP_011272607.1|1470148_1470907_-	helix-turn-helix domain-containing protein	NA	D0UIL5	Aggregatibacter_phage	69.3	1.6e-61
WP_011272606.1|1470903_1471578_-	phage antirepressor KilAC domain-containing protein	NA	D0UIL6	Aggregatibacter_phage	67.9	6.9e-80
WP_011272605.1|1471626_1472067_-	hypothetical protein	NA	A0A0U4B0E3	Pseudomonas_phage	32.2	1.5e-14
WP_005650512.1|1472115_1472304_-	helix-turn-helix domain-containing protein	NA	Q7Y5W4	Haemophilus_phage	93.5	6.5e-28
WP_005650509.1|1472414_1473113_+	helix-turn-helix transcriptional regulator	NA	Q7Y5W5	Haemophilus_phage	84.5	1.4e-112
WP_011272604.1|1473164_1474244_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005666912.1|1474246_1474582_+	STAS-like domain-containing protein	NA	A0A2H4J4X6	uncultured_Caudovirales_phage	41.5	8.1e-13
>prophage 7
NZ_LN831035	Haemophilus influenzae strain NCTC8143 chromosome 1	1890645	1713245	1721754	1890645		uncultured_Caudovirales_phage(16.67%)	8	NA	NA
WP_011272434.1|1713245_1713929_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	50.7	2.3e-54
WP_011272433.1|1713921_1714347_+	6-carboxytetrahydropterin synthase QueD	NA	A0A1U9WRB3	Streptococcus_virus	42.0	2.3e-20
WP_005686506.1|1714347_1714983_+	7-carboxy-7-deazaguanine synthase QueE	NA	S4TZT1	uncultured_phage	30.3	8.7e-16
WP_042594456.1|1715592_1717773_+	DNA helicase II	NA	A7KV33	Bacillus_phage	37.6	5.1e-116
WP_005647473.1|1717862_1718864_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_005653671.1|1718878_1719766_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_058222233.1|1719775_1720768_+	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	2.0e-14
WP_005663823.1|1720770_1721754_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.8	1.8e-20
>prophage 8
NZ_LN831035	Haemophilus influenzae strain NCTC8143 chromosome 1	1890645	1848578	1860877	1890645		Escherichia_phage(71.43%)	11	NA	NA
WP_011272359.1|1848578_1850423_+	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	29.3	2.8e-22
WP_005651690.1|1850547_1850826_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_005656013.1|1850834_1851197_-	membrane protein	NA	NA	NA	NA	NA
WP_011272358.1|1851171_1852281_-	transglutaminase family protein	NA	NA	NA	NA	NA
WP_044364421.1|1852533_1854957_+	molybdopterin-dependent oxidoreductase	NA	A0A077SK27	Escherichia_phage	50.6	7.0e-223
WP_038441398.1|1854967_1855585_+	dimethylsulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	57.8	5.8e-73
WP_038441400.1|1855586_1856426_+	dimethyl sulfoxide reductase anchor subunit	NA	A0A077SK59	Escherichia_phage	31.9	1.1e-18
WP_011272354.1|1856537_1857149_+	Tat proofreading chaperone DmsD	NA	A0A077SLS7	Escherichia_phage	32.5	5.1e-21
WP_058222237.1|1857148_1857649_+	ferredoxin-type protein NapF	NA	A0A077SLP0	Escherichia_phage	31.4	5.4e-13
WP_048942113.1|1857926_1859285_+	B12-binding domain-containing protein	NA	NA	NA	NA	NA
WP_005659310.1|1859311_1860877_+	RNA-directed DNA polymerase	NA	Q2P9X6	Enterobacteria_phage	33.3	1.5e-72
