bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NZ_CP013619	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	1.1|307233|25|NZ_CP013619|CRISPRCasFinder	NZ_CP013619.1	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	92.00	25	2	0	1	25	307402	307426	307202-307401|689511-689619|851729-851811|901063-901143|1779195-1779277|1867557-1867650|2108421-2108633|2164052-2164202|2328095-2328180|2504306-2504400|2532251-2532361	4e-04	34.9	1.0	GGCGAAAATACAGCTTACAATAATG	307402-307426	GGCGAAAAGTCAGCTTACAATAATG	2
NZ_CP013619	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	1.2|307289|25|NZ_CP013619|CRISPRCasFinder	NZ_CP013619.1	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	92.00	25	2	0	1	25	2119495	2119519	307202-307401|689511-689619|851729-851811|901063-901143|1779195-1779277|1867557-1867650|2108421-2108633|2164052-2164202|2328095-2328180|2504306-2504400|2532251-2532361	4e-04	34.9	1.0	TTGGAACAGCAATTTCTACAGACAA	2119495-2119519	TTGGAACACCAATTCCTACAGACAA	2
NZ_CP013619	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	3.1|851755|31|NZ_CP013619|CRISPRCasFinder	NZ_CP013619.1	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	100.00	31	0	0	1	31	984828	984858	307202-307401|689511-689619|851729-851811|901063-901143|1779195-1779277|1867557-1867650|2108421-2108633|2164052-2164202|2328095-2328180|2504306-2504400|2532251-2532361	9e-09	50.7	1.0	TTTCTTTTCGAAATTCTCTGTGTTGGGGCCC	984828-984858	TTTCTTTTCGAAATTCTCTGTGTTGGGGCCC	0
NZ_CP013619	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	3.1|851755|31|NZ_CP013619|CRISPRCasFinder	NZ_CP013619.1	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	100.00	31	0	0	1	31	1965307	1965337	307202-307401|689511-689619|851729-851811|901063-901143|1779195-1779277|1867557-1867650|2108421-2108633|2164052-2164202|2328095-2328180|2504306-2504400|2532251-2532361	9e-09	50.7	1.0	TTTCTTTTCGAAATTCTCTGTGTTGGGGCCC	1965307-1965337	TTTCTTTTCGAAATTCTCTGTGTTGGGGCCC	0
NZ_CP013619	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	3.1|851755|31|NZ_CP013619|CRISPRCasFinder	NZ_CP013619.1	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	100.00	31	0	0	1	31	1965417	1965447	307202-307401|689511-689619|851729-851811|901063-901143|1779195-1779277|1867557-1867650|2108421-2108633|2164052-2164202|2328095-2328180|2504306-2504400|2532251-2532361	9e-09	50.7	1.0	TTTCTTTTCGAAATTCTCTGTGTTGGGGCCC	1965417-1965447	TTTCTTTTCGAAATTCTCTGTGTTGGGGCCC	0
NZ_CP013619	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	3.1|851755|31|NZ_CP013619|CRISPRCasFinder	NZ_CP013619.1	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	100.00	31	0	0	1	31	2033675	2033705	307202-307401|689511-689619|851729-851811|901063-901143|1779195-1779277|1867557-1867650|2108421-2108633|2164052-2164202|2328095-2328180|2504306-2504400|2532251-2532361	9e-09	50.7	1.0	TTTCTTTTCGAAATTCTCTGTGTTGGGGCCC	2033675-2033705	TTTCTTTTCGAAATTCTCTGTGTTGGGGCCC	0
NZ_CP013619	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	3.1|851755|31|NZ_CP013619|CRISPRCasFinder	NZ_CP013619.1	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	96.77	31	1	0	1	31	289272	289302	307202-307401|689511-689619|851729-851811|901063-901143|1779195-1779277|1867557-1867650|2108421-2108633|2164052-2164202|2328095-2328180|2504306-2504400|2532251-2532361	8e-08	47.5	1.0	TTTCTTTTCGAAATTCTCTGTGTTGGGGCCC	289272-289302	TTTCTTTTCGAAATTCTCTTTGTTGGGGCCC	1
NZ_CP013619	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	3.1|851755|31|NZ_CP013619|CRISPRCasFinder	NZ_CP013619.1	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	96.77	31	1	0	1	31	289330	289360	307202-307401|689511-689619|851729-851811|901063-901143|1779195-1779277|1867557-1867650|2108421-2108633|2164052-2164202|2328095-2328180|2504306-2504400|2532251-2532361	8e-08	47.5	1.0	TTTCTTTTCGAAATTCTCTGTGTTGGGGCCC	289330-289360	TTTCTTTTCGAAATTCTCTTTGTTGGGGCCC	1
NZ_CP013619	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	3.1|851755|31|NZ_CP013619|CRISPRCasFinder	NZ_CP013619.1	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	96.77	31	1	0	1	31	383014	382984	307202-307401|689511-689619|851729-851811|901063-901143|1779195-1779277|1867557-1867650|2108421-2108633|2164052-2164202|2328095-2328180|2504306-2504400|2532251-2532361	8e-08	47.5	1.0	TTTCTTTTCGAAATTCTCTGTGTTGGGGCCC	382984-383014	GGGCCCCAACATAGAGAATTTCGAAAAGAAA	1
NZ_CP013619	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	3.1|851755|31|NZ_CP013619|CRISPRCasFinder	NZ_CP013619.1	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	96.77	31	1	0	1	31	681008	680978	307202-307401|689511-689619|851729-851811|901063-901143|1779195-1779277|1867557-1867650|2108421-2108633|2164052-2164202|2328095-2328180|2504306-2504400|2532251-2532361	8e-08	47.5	1.0	TTTCTTTTCGAAATTCTCTGTGTTGGGGCCC	680978-681008	GGGGCCCAACACAGAGAATTTCGAAAAGAAA	1
NZ_CP013619	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	3.1|851755|31|NZ_CP013619|CRISPRCasFinder	NZ_CP013619.1	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	96.77	31	1	0	1	31	805442	805412	307202-307401|689511-689619|851729-851811|901063-901143|1779195-1779277|1867557-1867650|2108421-2108633|2164052-2164202|2328095-2328180|2504306-2504400|2532251-2532361	8e-08	47.5	1.0	TTTCTTTTCGAAATTCTCTGTGTTGGGGCCC	805412-805442	GGGCCCCAACAAAGAGAATTTCGAAAAGAAA	1
NZ_CP013619	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	3.1|851755|31|NZ_CP013619|CRISPRCasFinder	NZ_CP013619.1	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	96.77	31	1	0	1	31	896656	896686	307202-307401|689511-689619|851729-851811|901063-901143|1779195-1779277|1867557-1867650|2108421-2108633|2164052-2164202|2328095-2328180|2504306-2504400|2532251-2532361	8e-08	47.5	1.0	TTTCTTTTCGAAATTCTCTGTGTTGGGGCCC	896656-896686	TTTCTTTTCGAAATTCTCTATGTTGGGGCCC	1
NZ_CP013619	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	3.1|851755|31|NZ_CP013619|CRISPRCasFinder	NZ_CP013619.1	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	96.77	31	1	0	1	31	1077795	1077825	307202-307401|689511-689619|851729-851811|901063-901143|1779195-1779277|1867557-1867650|2108421-2108633|2164052-2164202|2328095-2328180|2504306-2504400|2532251-2532361	8e-08	47.5	1.0	TTTCTTTTCGAAATTCTCTGTGTTGGGGCCC	1077795-1077825	TTTCTTTTCGAAATTCTCTTTGTTGGGGCCC	1
NZ_CP013619	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	3.1|851755|31|NZ_CP013619|CRISPRCasFinder	NZ_CP013619.1	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	96.77	31	1	0	1	31	1776762	1776732	307202-307401|689511-689619|851729-851811|901063-901143|1779195-1779277|1867557-1867650|2108421-2108633|2164052-2164202|2328095-2328180|2504306-2504400|2532251-2532361	8e-08	47.5	1.0	TTTCTTTTCGAAATTCTCTGTGTTGGGGCCC	1776732-1776762	GGGCCCCAACATAGAGAATTTCGAAAAGAAA	1
NZ_CP013619	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	3.1|851755|31|NZ_CP013619|CRISPRCasFinder	NZ_CP013619.1	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	96.77	31	1	0	1	31	1867548	1867518	307202-307401|689511-689619|851729-851811|901063-901143|1779195-1779277|1867557-1867650|2108421-2108633|2164052-2164202|2328095-2328180|2504306-2504400|2532251-2532361	8e-08	47.5	1.0	TTTCTTTTCGAAATTCTCTGTGTTGGGGCCC	1867518-1867548	GGGCCCCAACACAGAGAATTTCGACAAGAAA	1
NZ_CP013619	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	3.1|851755|31|NZ_CP013619|CRISPRCasFinder	NZ_CP013619.1	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	96.77	31	1	0	1	31	2282919	2282949	307202-307401|689511-689619|851729-851811|901063-901143|1779195-1779277|1867557-1867650|2108421-2108633|2164052-2164202|2328095-2328180|2504306-2504400|2532251-2532361	8e-08	47.5	1.0	TTTCTTTTCGAAATTCTCTGTGTTGGGGCCC	2282919-2282949	TTTCTTTTCGAAATTCTCTTTGTTGGGGCCC	1
NZ_CP013619	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	3.1|851755|31|NZ_CP013619|CRISPRCasFinder	NZ_CP013619.1	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	96.77	31	1	0	1	31	2328043	2328013	307202-307401|689511-689619|851729-851811|901063-901143|1779195-1779277|1867557-1867650|2108421-2108633|2164052-2164202|2328095-2328180|2504306-2504400|2532251-2532361	8e-08	47.5	1.0	TTTCTTTTCGAAATTCTCTGTGTTGGGGCCC	2328013-2328043	GGGCCCCAACACAGAGAATTTCAAAAAGAAA	1
NZ_CP013619	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	3.1|851755|31|NZ_CP013619|CRISPRCasFinder	NZ_CP013619.1	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	93.55	31	2	0	1	31	860736	860766	307202-307401|689511-689619|851729-851811|901063-901143|1779195-1779277|1867557-1867650|2108421-2108633|2164052-2164202|2328095-2328180|2504306-2504400|2532251-2532361	7e-07	44.4	1.0	TTTCTTTTCGAAATTCTCTGTGTTGGGGCCC	860736-860766	TTTCATTTCGAAATTCTCTATGTTGGGGCCC	2
NZ_CP013619	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	3.1|851755|31|NZ_CP013619|CRISPRCasFinder	NZ_CP013619.1	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	93.55	31	2	0	1	31	900794	900764	307202-307401|689511-689619|851729-851811|901063-901143|1779195-1779277|1867557-1867650|2108421-2108633|2164052-2164202|2328095-2328180|2504306-2504400|2532251-2532361	7e-07	44.4	1.0	TTTCTTTTCGAAATTCTCTGTGTTGGGGCCC	900764-900794	GGTCCCCAACACAGAGGATTTCGAAAAGAAA	2
NZ_CP013619	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	3.1|851755|31|NZ_CP013619|CRISPRCasFinder	NZ_CP013619.1	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	93.55	31	2	0	1	31	1386893	1386923	307202-307401|689511-689619|851729-851811|901063-901143|1779195-1779277|1867557-1867650|2108421-2108633|2164052-2164202|2328095-2328180|2504306-2504400|2532251-2532361	7e-07	44.4	1.0	TTTCTTTTCGAAATTCTCTGTGTTGGGGCCC	1386893-1386923	TTTCTTTTCGGAATTCTCTGTGTTGGAGCCC	2
NZ_CP013619	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	3.1|851755|31|NZ_CP013619|CRISPRCasFinder	NZ_CP013619.1	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	93.55	31	2	0	1	31	1432982	1433012	307202-307401|689511-689619|851729-851811|901063-901143|1779195-1779277|1867557-1867650|2108421-2108633|2164052-2164202|2328095-2328180|2504306-2504400|2532251-2532361	7e-07	44.4	1.0	TTTCTTTTCGAAATTCTCTGTGTTGGGGCCC	1432982-1433012	TTTCTTTTCGAAAATCTCTGTGTTGAGGCCC	2
NZ_CP013619	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	3.1|851755|31|NZ_CP013619|CRISPRCasFinder	NZ_CP013619.1	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	93.55	31	2	0	1	31	2293667	2293697	307202-307401|689511-689619|851729-851811|901063-901143|1779195-1779277|1867557-1867650|2108421-2108633|2164052-2164202|2328095-2328180|2504306-2504400|2532251-2532361	7e-07	44.4	1.0	TTTCTTTTCGAAATTCTCTGTGTTGGGGCCC	2293667-2293697	TTTCTTTTTGAAATTCTCTATGTTGGGGCCC	2
NZ_CP013619	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	3.1|851755|31|NZ_CP013619|CRISPRCasFinder	NZ_CP013619.1	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	93.55	31	2	0	1	31	2293722	2293752	307202-307401|689511-689619|851729-851811|901063-901143|1779195-1779277|1867557-1867650|2108421-2108633|2164052-2164202|2328095-2328180|2504306-2504400|2532251-2532361	7e-07	44.4	1.0	TTTCTTTTCGAAATTCTCTGTGTTGGGGCCC	2293722-2293752	TTTCTTTTTGAAATTCTCTATGTTGGGGCCC	2
NZ_CP013619	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	3.1|851755|31|NZ_CP013619|CRISPRCasFinder	NZ_CP013619.1	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	93.55	31	2	0	1	31	2728945	2728975	307202-307401|689511-689619|851729-851811|901063-901143|1779195-1779277|1867557-1867650|2108421-2108633|2164052-2164202|2328095-2328180|2504306-2504400|2532251-2532361	7e-07	44.4	1.0	TTTCTTTTCGAAATTCTCTGTGTTGGGGCCC	2728945-2728975	TTTCTTTTCGAAATTCTCTGTATTGGGGGCC	2
NZ_CP013619	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	4.1|901088|31|NZ_CP013619|CRISPRCasFinder	NZ_CP013619.1	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	93.55	31	2	0	1	31	846182	846152	307202-307401|689511-689619|851729-851811|901063-901143|1779195-1779277|1867557-1867650|2108421-2108633|2164052-2164202|2328095-2328180|2504306-2504400|2532251-2532361	7e-07	44.4	1.0	AAGAACCAATACATAATAAAGCATAAGTGAT	846152-846182	ATCACTAATGATTTATTATGTATTGGTTCTT	2
NZ_CP013619	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	6.1|1867591|26|NZ_CP013619|CRISPRCasFinder	NZ_CP013619.1	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	100.00	26	0	0	1	26	1965379	1965354	307202-307401|689511-689619|851729-851811|901063-901143|1779195-1779277|1867557-1867650|2108421-2108633|2164052-2164202|2328095-2328180|2504306-2504400|2532251-2532361	1e-06	42.8	1.0	AGAATTTCAAAAAAGAAATTCTACAG	1965354-1965379	CTGTAGAATTTCTTTTTTGAAATTCT	0
NZ_CP013619	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	9.1|2328125|26|NZ_CP013619|CRISPRCasFinder	NZ_CP013619.1	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	100.00	26	0	0	1	26	1651297	1651272	307202-307401|689511-689619|851729-851811|901063-901143|1779195-1779277|1867557-1867650|2108421-2108633|2164052-2164202|2328095-2328180|2504306-2504400|2532251-2532361	1e-06	42.8	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	1651272-1651297	CCGCCAGCTTCTATGTTGGGGCCCCG	0
NZ_CP013619	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	9.1|2328125|26|NZ_CP013619|CRISPRCasFinder	NZ_CP013619.1	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	96.15	26	1	0	1	26	896745	896720	307202-307401|689511-689619|851729-851811|901063-901143|1779195-1779277|1867557-1867650|2108421-2108633|2164052-2164202|2328095-2328180|2504306-2504400|2532251-2532361	1e-05	39.6	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	896720-896745	CCGTCAGCTTCTATGTTGGGGCCCCG	1
NZ_CP013619	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	9.1|2328125|26|NZ_CP013619|CRISPRCasFinder	NZ_CP013619.1	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	92.31	26	2	0	1	26	900865	900890	307202-307401|689511-689619|851729-851811|901063-901143|1779195-1779277|1867557-1867650|2108421-2108633|2164052-2164202|2328095-2328180|2504306-2504400|2532251-2532361	1e-04	36.5	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	900865-900890	CGGGGCCCCAACATAGTAGCAGGCGG	2
NZ_CP013619	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	9.1|2328125|26|NZ_CP013619|CRISPRCasFinder	NZ_CP013619.1	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	92.31	26	2	0	1	26	945800	945825	307202-307401|689511-689619|851729-851811|901063-901143|1779195-1779277|1867557-1867650|2108421-2108633|2164052-2164202|2328095-2328180|2504306-2504400|2532251-2532361	1e-04	36.5	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	945800-945825	CGGGGCCCCAACACAGAAGCTGGTGG	2
NZ_CP013619	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	9.1|2328125|26|NZ_CP013619|CRISPRCasFinder	NZ_CP013619.1	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	92.31	26	2	0	1	26	1382564	1382589	307202-307401|689511-689619|851729-851811|901063-901143|1779195-1779277|1867557-1867650|2108421-2108633|2164052-2164202|2328095-2328180|2504306-2504400|2532251-2532361	1e-04	36.5	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	1382564-1382589	CGGGGCCCCAACACAGAAACTGGCGG	2
NZ_CP013619	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	9.1|2328125|26|NZ_CP013619|CRISPRCasFinder	NZ_CP013619.1	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	92.31	26	2	0	1	26	2119533	2119558	307202-307401|689511-689619|851729-851811|901063-901143|1779195-1779277|1867557-1867650|2108421-2108633|2164052-2164202|2328095-2328180|2504306-2504400|2532251-2532361	1e-04	36.5	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	2119533-2119558	CGGGGCCCCAACACAAAAGCTGGCGG	2
NZ_CP013619	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	9.1|2328125|26|NZ_CP013619|CRISPRCasFinder	NZ_CP013619.1	Staphylococcus aureus strain RIVM1607 chromosome, complete genome	92.31	26	2	0	1	26	2460042	2460017	307202-307401|689511-689619|851729-851811|901063-901143|1779195-1779277|1867557-1867650|2108421-2108633|2164052-2164202|2328095-2328180|2504306-2504400|2532251-2532361	1e-04	36.5	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	2460017-2460042	CCGCCAGCTACTGTGTTGGGGCCCCG	2
