assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001477575.1_ASM147757v1	NZ_CP013688	Streptococcus gallolyticus strain ICDDRB-NRC-S1, complete genome	1	338028-338131	1	CRISPRCasFinder	no		DEDDh,cas3,RT,csa3,DinG,cas9,cas1,cas2,csn2,csm6	Orphan	TATTGATCAAAAAATTGCCAAGCAAAAAGAACGTT	35	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,RT,csa3,DinG,cas9,cas1,cas2,csn2,csm6	NA,NA|216aa|down_4|NZ_CP013688.1_343513_344161_+	NA|87aa|up_9|NZ_CP013688.1_326454_326715_+	PRK00041, PRK00041, hypothetical protein; Validated	NA|480aa|up_8|NZ_CP013688.1_326735_328175_-	COG0168, TrkG, Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	NA|450aa|up_7|NZ_CP013688.1_328178_329528_-	PRK09496, trkA, Trk system potassium transporter TrkA	NA|616aa|up_6|NZ_CP013688.1_329786_331634_+	pfam13520, AA_permease_2, Amino acid permease	NA|182aa|up_5|NZ_CP013688.1_333395_333941_+	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL	NA|190aa|up_4|NZ_CP013688.1_334377_334947_+	COG3601, COG3601, Predicted membrane protein [Function unknown]	NA|138aa|up_3|NZ_CP013688.1_335035_335449_+	COG2510, COG2510, Predicted membrane protein [Function unknown]	NA|219aa|up_2|NZ_CP013688.1_335570_336227_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|314aa|up_1|NZ_CP013688.1_336332_337274_+	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|188aa|up_0|NZ_CP013688.1_337270_337834_+	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|687aa|down_0|NZ_CP013688.1_338176_340237_+	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|263aa|down_1|NZ_CP013688.1_340271_341060_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|444aa|down_2|NZ_CP013688.1_341268_342600_+	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|263aa|down_3|NZ_CP013688.1_342671_343460_+	TIGR02493, PFLA, pyruvate formate-lyase 1-activating enzyme	NA|216aa|down_4|NZ_CP013688.1_343513_344161_+	NA	NA|311aa|down_5|NZ_CP013688.1_344309_345242_+	PRK05427, PRK05427, putative manganese-dependent inorganic pyrophosphatase; Provisional	NA|244aa|down_6|NZ_CP013688.1_347687_348419_-	PRK02101, PRK02101, peroxide stress protein YaaA	NA|172aa|down_7|NZ_CP013688.1_348528_349044_+	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	NA|219aa|down_8|NZ_CP013688.1_349036_349693_+	pfam08820, DUF1803, Domain of unknown function (DUF1803)	NA|346aa|down_9|NZ_CP013688.1_349764_350802_-	pfam01032, FecCD, FecCD transport family
GCF_001477575.1_ASM147757v1	NZ_CP013688	Streptococcus gallolyticus strain ICDDRB-NRC-S1, complete genome	2	361914-362008	2	CRISPRCasFinder	no		DEDDh,cas3,RT,csa3,DinG,cas9,cas1,cas2,csn2,csm6	Orphan	ACTACCCCAACAACTCCAAATAC	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,RT,csa3,DinG,cas9,cas1,cas2,csn2,csm6	NA,NA	NA|172aa|up_9|NZ_CP013688.1_348528_349044_+	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	NA|219aa|up_8|NZ_CP013688.1_349036_349693_+	pfam08820, DUF1803, Domain of unknown function (DUF1803)	NA|346aa|up_7|NZ_CP013688.1_349764_350802_-	pfam01032, FecCD, FecCD transport family	NA|341aa|up_6|NZ_CP013688.1_350762_351785_-	pfam01032, FecCD, FecCD transport family	NA|311aa|up_5|NZ_CP013688.1_351862_352795_-	cd01138, FeuA, Periplasmic binding protein FeuA	NA|261aa|up_4|NZ_CP013688.1_352816_353599_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|484aa|up_3|NZ_CP013688.1_353775_355227_-	PRK14022, PRK14022, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase	NA|545aa|up_2|NZ_CP013688.1_355323_356958_+	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|365aa|up_1|NZ_CP013688.1_357209_358304_+	PRK07269, PRK07269, cystathionine gamma-synthase; Reviewed	NA|388aa|up_0|NZ_CP013688.1_358305_359469_+	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]	NA|210aa|down_0|NZ_CP013688.1_362394_363024_+	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	NA|197aa|down_1|NZ_CP013688.1_363145_363736_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|148aa|down_2|NZ_CP013688.1_363837_364281_+	pfam06133, Com_YlbF, Control of competence regulator ComK, YlbF/YmcA	NA|84aa|down_3|NZ_CP013688.1_364273_364525_+	PRK02302, PRK02302, hypothetical protein; Provisional	NA|394aa|down_4|NZ_CP013688.1_364637_365819_+	cd06347, PBP1_ABC_LivK_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions	NA|295aa|down_5|NZ_CP013688.1_365870_366755_+	COG0559, LivH, Branched-chain amino acid ABC-type transport system, permease components [Amino acid transport and metabolism]	NA|318aa|down_6|NZ_CP013688.1_366758_367712_+	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins	NA|255aa|down_7|NZ_CP013688.1_367711_368476_+	COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|237aa|down_8|NZ_CP013688.1_368475_369186_+	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|220aa|down_9|NZ_CP013688.1_369356_370016_+	cd04584, CBS_pair_AcuB_like, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the ACT domain
GCF_001477575.1_ASM147757v1	NZ_CP013688	Streptococcus gallolyticus strain ICDDRB-NRC-S1, complete genome	3	588267-589886	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas9,cas1,cas2,csn2	DEDDh,cas3,RT,csa3,DinG,cas9,cas1,cas2,csn2,csm6	Type II-B,Type II-A,Type II-C	GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC,GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC,GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC	36,36,36	0	0	NA	NA	NA:NA:NA	24,24,18	24	TypeII-B,TypeII-A,TypeII-C	DEDDh,cas3,RT,csa3,DinG,cas9,cas1,cas2,csn2,csm6	NA|57aa|up_5|NZ_CP013688.1_581332_581503_+,NA|141aa|down_6|NZ_CP013688.1_597860_598283_+	NA|377aa|up_9|NZ_CP013688.1_577340_578471_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|243aa|up_8|NZ_CP013688.1_578475_579204_+	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase	NA|258aa|up_7|NZ_CP013688.1_579887_580661_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|227aa|up_6|NZ_CP013688.1_580650_581331_+	COG4478, COG4478, Predicted membrane protein [Function unknown]	NA|57aa|up_5|NZ_CP013688.1_581332_581503_+	NA	NA|139aa|up_4|NZ_CP013688.1_581835_582252_+	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	cas9|1130aa|up_3|NZ_CP013688.1_582357_585747_+	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1	cas1|304aa|up_2|NZ_CP013688.1_585919_586831_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|108aa|up_1|NZ_CP013688.1_586832_587156_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|350aa|up_0|NZ_CP013688.1_587152_588202_+	cd12217, Stu0660_Csn2, Stu0660-like CRISPR/Cas system-associated protein Csn2	NA|612aa|down_0|NZ_CP013688.1_590046_591882_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|428aa|down_1|NZ_CP013688.1_592099_593383_+	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional	NA|159aa|down_2|NZ_CP013688.1_593375_593852_+	PRK00131, aroK, shikimate kinase; Reviewed	NA|275aa|down_3|NZ_CP013688.1_593848_594673_+	PRK11898, PRK11898, prephenate dehydratase; Provisional	NA|478aa|down_4|NZ_CP013688.1_594747_596181_+	COG1316, LytR, Transcriptional regulator [Transcription]	NA|454aa|down_5|NZ_CP013688.1_596290_597652_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|141aa|down_6|NZ_CP013688.1_597860_598283_+	NA	NA|182aa|down_7|NZ_CP013688.1_598283_598829_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|160aa|down_8|NZ_CP013688.1_599809_600289_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|79aa|down_9|NZ_CP013688.1_600209_600446_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed
GCF_001477575.1_ASM147757v1	NZ_CP013688	Streptococcus gallolyticus strain ICDDRB-NRC-S1, complete genome	4	1673077-1673158	4	CRISPRCasFinder	no	csa3	DEDDh,cas3,RT,csa3,DinG,cas9,cas1,cas2,csn2,csm6	Type I-A	AATAACATTCAAGTGTTTGTTTGAATA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,RT,csa3,DinG,cas9,cas1,cas2,csn2,csm6	NA|565aa|up_3|NZ_CP013688.1_1666531_1668226_-,NA|51aa|up_2|NZ_CP013688.1_1669547_1669700_-,NA|77aa|down_3|NZ_CP013688.1_1676441_1676672_+,NA|186aa|down_4|NZ_CP013688.1_1676675_1677233_+,NA|75aa|down_6|NZ_CP013688.1_1678249_1678474_+	NA|189aa|up_9|NZ_CP013688.1_1660482_1661049_+	NF033218, anchor_AmaP, alkaline shock response membrane anchor protein AmaP	NA|57aa|up_8|NZ_CP013688.1_1661061_1661232_+	COG5547, COG5547, Small integral membrane protein [Function unknown]	NA|189aa|up_7|NZ_CP013688.1_1661246_1661813_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|68aa|up_6|NZ_CP013688.1_1661885_1662089_+	pfam05532, CsbD, CsbD-like	NA|369aa|up_5|NZ_CP013688.1_1663829_1664936_-	TIGR02881, Stage_V_sporulation_protein_K, stage V sporulation protein K	NA|488aa|up_4|NZ_CP013688.1_1664935_1666399_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|565aa|up_3|NZ_CP013688.1_1666531_1668226_-	NA	NA|51aa|up_2|NZ_CP013688.1_1669547_1669700_-	NA	NA|77aa|up_1|NZ_CP013688.1_1669928_1670159_-	pfam12645, HTH_16, Helix-turn-helix domain	NA|708aa|up_0|NZ_CP013688.1_1670935_1673059_-	cd07545, P-type_ATPase_Cd-like, P-type heavy metal-transporting ATPase, similar to Staphylococcus aureus plasmid pI258 CadA, a cadmium-efflux ATPase	NA|168aa|down_0|NZ_CP013688.1_1673285_1673789_+	pfam01252, Peptidase_A8, Signal peptidase (SPase) II	csa3|112aa|down_1|NZ_CP013688.1_1673959_1674295_-	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|382aa|down_2|NZ_CP013688.1_1674466_1675611_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|77aa|down_3|NZ_CP013688.1_1676441_1676672_+	NA	NA|186aa|down_4|NZ_CP013688.1_1676675_1677233_+	NA	NA|332aa|down_5|NZ_CP013688.1_1677244_1678240_+	pfam12642, TpcC, Conjugative transposon protein TcpC	NA|75aa|down_6|NZ_CP013688.1_1678249_1678474_+	NA	NA|137aa|down_7|NZ_CP013688.1_1678476_1678887_+	pfam12648, TcpE, TcpE family	NA|294aa|down_8|NZ_CP013688.1_1680693_1681575_-	PRK07315, PRK07315, fructose-bisphosphate aldolase; Provisional	NA|312aa|down_9|NZ_CP013688.1_1681924_1682860_-	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only]
