The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP012395	Clostridium autoethanogenum DSM 10061 chromosome, complete genome	4352446	2817451	2824494	4352446	transposase	Escherichia_phage(66.67%)	6	NA	NA
WP_023162734.1|2817451_2818831_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	34.9	8.1e-67
WP_023162735.1|2818890_2819946_+	dTDP-glucose 4,6-dehydratase	NA	A0A1D8EQC0	Escherichia_phage	44.0	2.3e-74
WP_023162736.1|2820125_2821004_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	A0A291LA53	Escherichia_phage	57.1	2.1e-92
WP_023162737.1|2821024_2821912_+	dTDP-4-dehydrorhamnose reductase	NA	A0A1D8EQE2	Escherichia_phage	37.6	3.1e-35
WP_029170151.1|2822095_2822644_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	55.9	1.0e-49
WP_058893783.1|2822952_2824494_-|transposase	IS66 family transposase	transposase	S5VTD3	Leptospira_phage	36.0	4.6e-71
>prophage 2
NZ_CP012395	Clostridium autoethanogenum DSM 10061 chromosome, complete genome	4352446	3471677	3479006	4352446	tRNA	uncultured_Mediterranean_phage(50.0%)	8	NA	NA
WP_013237791.1|3471677_3472556_+	tyrosine recombinase XerD	NA	A0A1B1IQT7	uncultured_Mediterranean_phage	26.3	4.7e-12
WP_029170125.1|3472690_3473902_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	32.0	7.4e-32
WP_013237793.1|3474060_3475227_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A219YCT8	Aeromonas_phage	35.9	6.1e-23
WP_013237794.1|3475227_3475983_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	28.2	4.1e-12
WP_013237795.1|3475972_3476548_+	segregation/condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	36.0	6.9e-20
WP_013237796.1|3476602_3477043_-	sporulation protein YtfJ	NA	NA	NA	NA	NA
WP_013237797.1|3477110_3477611_-	DUF2953 domain-containing protein	NA	NA	NA	NA	NA
WP_013237798.1|3477902_3479006_+	D-alanyl-D-alanine carboxypeptidase	NA	A0A1P8VVG5	Erythrobacter_phage	29.9	1.2e-07
>prophage 3
NZ_CP012395	Clostridium autoethanogenum DSM 10061 chromosome, complete genome	4352446	4038514	4066679	4352446	protease,integrase,terminase,tail,capsid,head,portal	Clostridium_phage(50.0%)	36	4030095:4030111	4065474:4065490
4030095:4030111	attL	TATTATTTTATGTAAAT	NA	NA	NA	NA
WP_023163375.1|4038514_4039477_+|integrase	site-specific integrase	integrase	A0A1L4BKH1	Thermus_phage	23.7	5.4e-09
WP_023163376.1|4039476_4039905_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023163377.1|4040330_4040543_+	transcriptional regulator	NA	A0A2H4J765	uncultured_Caudovirales_phage	65.2	7.1e-15
WP_023163378.1|4040685_4041081_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023163379.1|4041202_4041370_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023163380.1|4041369_4042638_+	cell division FtsK/SpoIIIE	NA	NA	NA	NA	NA
WP_023163382.1|4043434_4044055_+	restriction endonuclease	NA	NA	NA	NA	NA
WP_029170230.1|4044357_4044882_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023163384.1|4044907_4045210_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023163385.1|4045361_4045850_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023163386.1|4045874_4046099_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_023163387.1|4046328_4046631_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023163388.1|4046742_4046922_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023163389.1|4046948_4047290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023163390.1|4047739_4048687_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023163391.1|4048705_4049851_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023163392.1|4050221_4052960_+	RNA-dependent RNA polymerase	NA	O64076	Bacillus_phage	35.3	3.6e-127
WP_023163393.1|4053502_4053772_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023163394.1|4053941_4054562_+	Excinuclease ABC C subunit domain protein	NA	NA	NA	NA	NA
WP_023163395.1|4054658_4054934_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023163396.1|4055914_4056571_+	DUF4236 domain-containing protein	NA	NA	NA	NA	NA
WP_023163398.1|4056787_4056964_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023163399.1|4056947_4057184_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023163400.1|4057184_4057406_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023163401.1|4057408_4057882_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023163402.1|4058096_4058582_+|terminase	phage terminase small subunit P27 family	terminase	A0A0A7RUQ4	Clostridium_phage	41.0	7.6e-20
WP_023163403.1|4058578_4060264_+|terminase	terminase	terminase	A0A0A7RUM0	Clostridium_phage	61.4	2.8e-202
WP_029702297.1|4060338_4060524_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023163405.1|4060551_4061859_+|portal	phage portal protein	portal	A6M949	Geobacillus_virus	40.3	2.0e-75
WP_023163406.1|4061848_4062646_+|protease	Clp protease ClpP	protease	A0A0A7RUD3	Clostridium_phage	60.4	2.0e-78
WP_023163407.1|4062703_4063933_+|capsid	phage major capsid protein	capsid	A0A2I7SBY4	Paenibacillus_phage	32.1	3.7e-31
WP_023163408.1|4064025_4064331_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A0A7RWM0	Clostridium_phage	55.8	8.7e-22
WP_023163409.1|4064332_4064677_+|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
WP_023163410.1|4064690_4065128_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023163411.1|4065124_4065568_+	hypothetical protein	NA	NA	NA	NA	NA
4065474:4065490	attR	TATTATTTTATGTAAAT	NA	NA	NA	NA
WP_023163412.1|4065584_4066679_+	hypothetical protein	NA	A0A090D804	Clostridium_phage	27.6	2.2e-22
