assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001506165.1_ASM150616v1	NZ_CP011427	Pantoea vagans strain ND02 chromosome, complete genome	1	259745-259819	1	CRISPRCasFinder	no	DEDDh	DEDDh,cas3,RT,DinG	Unclear	CAGAATCGAGTATTTCAGTTTGCA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,RT,DinG	NA,NA	NA|90aa|up_9|NZ_CP011427.1_249730_250000_+	COG2732, COG2732, Barstar, RNAse (barnase) inhibitor [Transcription]	NA|89aa|up_8|NZ_CP011427.1_250058_250325_-	pfam07338, DUF1471, Protein of unknown function (DUF1471)	NA|89aa|up_7|NZ_CP011427.1_250429_250696_-	pfam07338, DUF1471, Protein of unknown function (DUF1471)	NA|88aa|up_6|NZ_CP011427.1_250787_251051_-	pfam07338, DUF1471, Protein of unknown function (DUF1471)	NA|157aa|up_5|NZ_CP011427.1_251541_252012_-	PRK05066, PRK05066, transcriptional regulator ArgR	NA|312aa|up_4|NZ_CP011427.1_252432_253368_+	PRK05086, PRK05086, malate dehydrogenase; Provisional	NA|1112aa|up_3|NZ_CP011427.1_253414_256750_-	PRK10929, PRK10929, putative mechanosensitive channel protein; Provisional	NA|299aa|up_2|NZ_CP011427.1_256764_257661_-	PRK00044, psd, phosphatidylserine decarboxylase; Reviewed	NA|349aa|up_1|NZ_CP011427.1_257878_258925_-	PRK12288, PRK12288, small ribosomal subunit biogenesis GTPase RsgA	DEDDh|183aa|up_0|NZ_CP011427.1_259028_259577_+	PRK05359, PRK05359, oligoribonuclease; Provisional	NA|380aa|down_0|NZ_CP011427.1_260805_261945_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|505aa|down_1|NZ_CP011427.1_261943_263458_+	PRK10565, PRK10565, putative carbohydrate kinase; Provisional	NA|159aa|down_2|NZ_CP011427.1_263464_263941_+	PRK10646, PRK10646, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA|553aa|down_3|NZ_CP011427.1_263937_265596_+	PRK10431, PRK10431, N-acetylmuramoyl-l-alanine amidase II; Provisional	NA|616aa|down_4|NZ_CP011427.1_265638_267486_+	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|317aa|down_5|NZ_CP011427.1_267478_268429_+	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|106aa|down_6|NZ_CP011427.1_268530_268848_+	PRK00395, hfq, RNA-binding protein Hfq; Provisional	NA|427aa|down_7|NZ_CP011427.1_268928_270209_+	PRK11058, PRK11058, GTPase HflX; Provisional	NA|413aa|down_8|NZ_CP011427.1_270300_271539_+	PRK10930, PRK10930, FtsH protease activity modulator HflK	NA|335aa|down_9|NZ_CP011427.1_271542_272547_+	PRK11029, PRK11029, protease modulator HflC
GCF_001506165.1_ASM150616v1	NZ_CP011427	Pantoea vagans strain ND02 chromosome, complete genome	2	354347-354451	2	CRISPRCasFinder	no		DEDDh,cas3,RT,DinG	Orphan	TTGATGCCATCACTGGCTGCAGCGCAAATGCGCAATAAAT	40	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,RT,DinG	NA,NA|59aa|down_2|NZ_CP011427.1_357058_357235_-,NA|53aa|down_9|NZ_CP011427.1_367425_367584_-	NA|167aa|up_9|NZ_CP011427.1_341374_341875_-	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only]	NA|373aa|up_8|NZ_CP011427.1_341956_343075_+	PRK15001, PRK15001, 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG	NA|668aa|up_7|NZ_CP011427.1_343075_345079_-	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain	NA|344aa|up_6|NZ_CP011427.1_345550_346582_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_5|NZ_CP011427.1_346591_347356_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_4|NZ_CP011427.1_347436_348756_+	PRK14984, PRK14984, gluconate transporter	NA|237aa|up_3|NZ_CP011427.1_348785_349496_-	cd16833, YfiH, protein of unknown function YfiH	NA|270aa|up_2|NZ_CP011427.1_349605_350415_+	cd07534, HAD_CAP, molecular class C acid phosphatases, similar to Haemophilus influenzae e (P4) acid phosphatase; belongs to the haloacid dehalogenase-like hydrolase superfamily	NA|490aa|up_1|NZ_CP011427.1_351175_352645_+	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|475aa|up_0|NZ_CP011427.1_352874_354299_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|365aa|down_0|NZ_CP011427.1_354749_355844_-	PRK01966, ddl, D-alanine--D-alanine ligase	NA|235aa|down_1|NZ_CP011427.1_356243_356948_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|59aa|down_2|NZ_CP011427.1_357058_357235_-	NA	NA|113aa|down_3|NZ_CP011427.1_358466_358805_+	pfam18593, CdiI_2, CdiI immunity protein	NA|350aa|down_4|NZ_CP011427.1_359559_360609_+	pfam03235, DUF262, Protein of unknown function DUF262	NA|196aa|down_5|NZ_CP011427.1_360595_361183_+	pfam18735, HEPN_RiboL-PSP, RiboL-PSP-HEPN	NA|861aa|down_6|NZ_CP011427.1_361869_364452_-	pfam04411, PDDEXK_7, PD-(D/E)XK nuclease superfamily	NA|725aa|down_7|NZ_CP011427.1_364454_366629_-	COG1401, McrB, GTPase subunit of restriction endonuclease [Defense mechanisms]	NA|69aa|down_8|NZ_CP011427.1_367028_367235_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|53aa|down_9|NZ_CP011427.1_367425_367584_-	NA
GCF_001506165.1_ASM150616v1	NZ_CP011427	Pantoea vagans strain ND02 chromosome, complete genome	3	663979-664068	3	CRISPRCasFinder	no		DEDDh,cas3,RT,DinG	Orphan	GGGGCGCCATTTATGGCGACCAAAA	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,RT,DinG	NA,NA	NA|244aa|up_9|NZ_CP011427.1_655150_655882_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|218aa|up_8|NZ_CP011427.1_656058_656712_+	PRK15087, PRK15087, hemolysin; Provisional	NA|328aa|up_7|NZ_CP011427.1_656767_657751_-	PRK09559, PRK09559, putative global regulator; Reviewed	NA|89aa|up_6|NZ_CP011427.1_657969_658236_+	PRK10878, PRK10878, FAD assembly factor SdhE	NA|139aa|up_5|NZ_CP011427.1_658210_658627_+	pfam07254, Cpta_toxin, Membrane-bound toxin component of toxin-antitoxin system	NA|173aa|up_4|NZ_CP011427.1_658623_659142_-	PRK12359, PRK12359, flavodoxin FldB; Provisional	NA|298aa|up_3|NZ_CP011427.1_659244_660138_+	PRK00283, xerD, tyrosine recombinase	NA|238aa|up_2|NZ_CP011427.1_660160_660874_+	PRK10877, PRK10877, protein disulfide isomerase II DsbC; Provisional	NA|576aa|up_1|NZ_CP011427.1_660880_662608_+	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ	NA|384aa|up_0|NZ_CP011427.1_662719_663871_+	pfam00665, rve, Integrase core domain	NA|366aa|down_0|NZ_CP011427.1_664169_665268_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|507aa|down_1|NZ_CP011427.1_665277_666798_+	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|284aa|down_2|NZ_CP011427.1_666962_667814_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|279aa|down_3|NZ_CP011427.1_668054_668891_+	cd13625, PBP2_AA_binding_like_1, Substrate-binding domain of putative amino acid-binding protein; the type 2 periplasmic-binding protein fold	NA|211aa|down_4|NZ_CP011427.1_668893_669526_+	pfam09347, DUF1989, Domain of unknown function (DUF1989)	NA|216aa|down_5|NZ_CP011427.1_669509_670157_+	pfam09347, DUF1989, Domain of unknown function (DUF1989)	NA|217aa|down_6|NZ_CP011427.1_670160_670811_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|222aa|down_7|NZ_CP011427.1_670810_671476_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|224aa|down_8|NZ_CP011427.1_671489_672161_+	pfam09347, DUF1989, Domain of unknown function (DUF1989)	NA|209aa|down_9|NZ_CP011427.1_672745_673372_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain
GCF_001506165.1_ASM150616v1	NZ_CP011427	Pantoea vagans strain ND02 chromosome, complete genome	4	1316766-1316838	4	CRISPRCasFinder	no		DEDDh,cas3,RT,DinG	Orphan	CAACCCTACGAGGATCGTACGCG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,RT,DinG	NA,NA	NA|600aa|up_9|NZ_CP011427.1_1301309_1303109_+	PRK10833, PRK10833, putative assembly protein; Provisional	NA|522aa|up_8|NZ_CP011427.1_1303207_1304773_-	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|478aa|up_7|NZ_CP011427.1_1305563_1306997_+	PRK15204, PRK15204, undecaprenyl-phosphate galactose phosphotransferase; Provisional	NA|377aa|up_6|NZ_CP011427.1_1307283_1308414_+	PRK15078, PRK15078, polysaccharide export protein Wza; Provisional	NA|145aa|up_5|NZ_CP011427.1_1308423_1308858_+	PRK10126, PRK10126, low molecular weight protein-tyrosine-phosphatase Wzb	NA|726aa|up_4|NZ_CP011427.1_1308870_1311048_+	PRK11519, PRK11519, tyrosine-protein kinase Wzc	NA|306aa|up_3|NZ_CP011427.1_1311379_1312297_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|251aa|up_2|NZ_CP011427.1_1312370_1313123_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|345aa|up_1|NZ_CP011427.1_1313276_1314311_+	cd03820, GT4_AmsD-like, amylovoran biosynthesis glycosyltransferase AmsD and similar proteins	NA|737aa|up_0|NZ_CP011427.1_1314490_1316701_+	pfam09008, Head_binding, Head binding	NA|421aa|down_0|NZ_CP011427.1_1316982_1318245_+	PRK10017, PRK10017, colanic acid biosynthesis protein; Provisional	NA|408aa|down_1|NZ_CP011427.1_1318248_1319472_+	PRK15427, PRK15427, colanic acid biosynthesis glycosyltransferase WcaL; Provisional	NA|447aa|down_2|NZ_CP011427.1_1319468_1320809_+	cd13127, MATE_tuaB_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins	NA|298aa|down_3|NZ_CP011427.1_1321270_1322164_+	PRK10122, PRK10122, UTP--glucose-1-phosphate uridylyltransferase GalF	NA|338aa|down_4|NZ_CP011427.1_1322208_1323222_+	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs	NA|360aa|down_5|NZ_CP011427.1_1323661_1324741_+	PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional	NA|296aa|down_6|NZ_CP011427.1_1324740_1325628_+	PRK09987, PRK09987, dTDP-4-dehydrorhamnose reductase; Provisional	NA|294aa|down_7|NZ_CP011427.1_1325665_1326547_+	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form	NA|183aa|down_8|NZ_CP011427.1_1326546_1327095_+	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase	NA|310aa|down_9|NZ_CP011427.1_1327147_1328077_+	cd04196, GT_2_like_d, Subfamily of Glycosyltransferase Family GT2 of unknown function
GCF_001506165.1_ASM150616v1	NZ_CP011427	Pantoea vagans strain ND02 chromosome, complete genome	5	2759458-2759541	5	CRISPRCasFinder	no		DEDDh,cas3,RT,DinG	Orphan	CGCCAGTTACTGCGCATTGCGCTG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,RT,DinG	NA,NA	NA|254aa|up_9|NZ_CP011427.1_2750497_2751259_+	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only]	NA|415aa|up_8|NZ_CP011427.1_2751255_2752500_+	PRK11263, PRK11263, cardiolipin synthase ClsB	NA|322aa|up_7|NZ_CP011427.1_2752499_2753465_+	COG0392, COG0392, Predicted integral membrane protein [Function unknown]	NA|236aa|up_6|NZ_CP011427.1_2753645_2754353_-	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|365aa|up_5|NZ_CP011427.1_2754410_2755505_-	pfam07759, DUF1615, Protein of unknown function (DUF1615)	NA|151aa|up_4|NZ_CP011427.1_2755586_2756039_-	PRK10678, moaE, molybdopterin synthase catalytic subunit MoaE	NA|82aa|up_3|NZ_CP011427.1_2756041_2756287_-	PRK11130, moaD, molybdopterin synthase small subunit; Provisional	NA|161aa|up_2|NZ_CP011427.1_2756279_2756762_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|172aa|up_1|NZ_CP011427.1_2756764_2757280_-	TIGR02667, Molybdenum_cofactor_biosynthesis_protein_B	NA|329aa|up_0|NZ_CP011427.1_2757297_2758284_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|674aa|down_0|NZ_CP011427.1_2759641_2761663_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|239aa|down_1|NZ_CP011427.1_2762575_2763292_+	TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE	NA|224aa|down_2|NZ_CP011427.1_2763390_2764062_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|down_3|NZ_CP011427.1_2764058_2764814_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|384aa|down_4|NZ_CP011427.1_2764797_2765949_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|344aa|down_5|NZ_CP011427.1_2765948_2766980_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|431aa|down_6|NZ_CP011427.1_2767068_2768361_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|down_7|NZ_CP011427.1_2768430_2768907_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|332aa|down_8|NZ_CP011427.1_2769023_2770019_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_9|NZ_CP011427.1_2770168_2770987_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional
GCF_001506165.1_ASM150616v1	NZ_CP011427	Pantoea vagans strain ND02 chromosome, complete genome	6	2932858-2932947	6	CRISPRCasFinder	no		DEDDh,cas3,RT,DinG	Orphan	CGGGATTATTGAAATCGTAGCGGC	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,RT,DinG	NA,NA|277aa|down_9|NZ_CP011427.1_2944179_2945010_-	NA|355aa|up_9|NZ_CP011427.1_2920743_2921808_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|806aa|up_8|NZ_CP011427.1_2922014_2924432_-	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|229aa|up_7|NZ_CP011427.1_2924428_2925115_-	PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional	NA|208aa|up_6|NZ_CP011427.1_2925085_2925709_+	PRK10528, PRK10528, multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional	NA|258aa|up_5|NZ_CP011427.1_2925740_2926514_+	PRK08017, PRK08017, SDR family oxidoreductase	NA|285aa|up_4|NZ_CP011427.1_2926593_2927448_+	COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]	NA|305aa|up_3|NZ_CP011427.1_2927512_2928427_+	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]	NA|153aa|up_2|NZ_CP011427.1_2928426_2928885_+	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|139aa|up_1|NZ_CP011427.1_2928860_2929277_-	PRK10227, PRK10227, HTH-type transcriptional regulator CueR	NA|835aa|up_0|NZ_CP011427.1_2929500_2932005_+	PRK10671, copA, copper-exporting P-type ATPase CopA	NA|160aa|down_0|NZ_CP011427.1_2933189_2933669_+	PRK10670, PRK10670, Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK	NA|290aa|down_1|NZ_CP011427.1_2933665_2934535_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|144aa|down_2|NZ_CP011427.1_2934625_2935057_+	COG4125, COG4125, Predicted membrane protein [Function unknown]	NA|584aa|down_3|NZ_CP011427.1_2935201_2936953_-	PRK09558, ushA, bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed	NA|399aa|down_4|NZ_CP011427.1_2937116_2938313_+	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters	NA|563aa|down_5|NZ_CP011427.1_2938534_2940223_+	PRK10669, PRK10669, putative cation:proton antiport protein; Provisional	NA|434aa|down_6|NZ_CP011427.1_2940872_2942174_-	PRK15074, PRK15074, inosine/guanosine kinase; Provisional	NA|320aa|down_7|NZ_CP011427.1_2942231_2943191_-	PRK00035, hemH, ferrochelatase; Reviewed	NA|215aa|down_8|NZ_CP011427.1_2943382_2944027_-	PRK00279, adk, adenylate kinase; Reviewed	NA|277aa|down_9|NZ_CP011427.1_2944179_2945010_-	NA
