The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_LN854573	Pseudomonas sp. URMO17WK12:I11 isolate Shine chromosome 1	6374437	762708	859655	6374437	integrase,terminase,holin,lysis,capsid,protease,tail,head,plate,portal,tRNA	uncultured_Caudovirales_phage(66.67%)	97	844004:844019	860134:860149
WP_059181213.1|762708_764190_-|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_027921600.1|764409_765459_+	HlyD family secretion protein	NA	NA	NA	NA	NA
WP_059181214.1|765448_766999_+	multidrug efflux MFS transporter	NA	NA	NA	NA	NA
WP_027921602.1|767088_769104_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_027921603.1|769442_770639_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_027921604.1|770878_771079_+	hypothetical protein	NA	NA	NA	NA	NA
WP_027921605.1|771075_771306_-	hypothetical protein	NA	NA	NA	NA	NA
WP_059181215.1|772035_775122_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_027921608.1|775118_776240_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_017339654.1|776417_777038_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_082694296.1|777125_778643_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_155953699.1|779186_780356_+	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	28.5	2.1e-07
WP_027921610.1|780368_780737_+	response regulator	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	1.1e-10
WP_027921611.1|780759_781086_+	STAS domain-containing protein	NA	NA	NA	NA	NA
WP_027921612.1|781109_783317_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_059181217.1|783495_785952_+	PAS domain-containing methyl-accepting chemotaxis protein	NA	NA	NA	NA	NA
WP_059181218.1|785964_786495_+	purine-binding chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_059183021.1|786600_787410_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_059181219.1|787406_787889_+	chemotaxis protein CheD	NA	NA	NA	NA	NA
WP_027921616.1|787897_788968_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_059181220.1|788989_789637_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_059181221.1|789646_790906_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_027921619.1|791156_792674_-	purine permease	NA	NA	NA	NA	NA
WP_059181222.1|792930_793206_+	BrnT family toxin	NA	NA	NA	NA	NA
WP_059181223.1|793209_793542_+	BrnA antitoxin family protein	NA	NA	NA	NA	NA
WP_059181224.1|793575_794403_-	arylamine N-acetyltransferase	NA	NA	NA	NA	NA
WP_059181225.1|794514_795309_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_027921625.1|796144_797551_-	DUF1254 domain-containing protein	NA	M1IA53	Paramecium_bursaria_Chlorella_virus	32.9	1.1e-50
WP_059181226.1|797692_799264_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_027921627.1|799572_800040_+	hypothetical protein	NA	NA	NA	NA	NA
WP_059181227.1|800081_801833_-	L,D-transpeptidase family protein	NA	NA	NA	NA	NA
WP_027921629.1|801914_802619_+	murein L,D-transpeptidase catalytic domain family protein	NA	NA	NA	NA	NA
WP_059181228.1|802725_804432_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_027921631.1|804443_805331_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_059181229.1|805369_805741_+	copper homeostasis periplasmic binding protein CopC	NA	NA	NA	NA	NA
WP_059181230.1|805744_806689_+	copper homeostasis membrane protein CopD	NA	NA	NA	NA	NA
WP_027921634.1|806764_807550_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_027921635.1|807672_807891_-	hypothetical protein	NA	NA	NA	NA	NA
WP_027921636.1|808178_808784_+	hypothetical protein	NA	NA	NA	NA	NA
WP_156428502.1|809455_809938_+	hypothetical protein	NA	NA	NA	NA	NA
WP_172825911.1|810207_811239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_059181232.1|811535_812195_-	hypothetical protein	NA	NA	NA	NA	NA
WP_059181233.1|812590_812806_+	hypothetical protein	NA	A0A2H4J177	uncultured_Caudovirales_phage	82.1	6.1e-22
WP_059181234.1|814275_814734_+	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_059181235.1|815326_816382_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_059181236.1|816522_816894_+	VOC family protein	NA	NA	NA	NA	NA
WP_156428540.1|817018_817336_-	hypothetical protein	NA	NA	NA	NA	NA
WP_059181238.1|817653_818829_+	PAAR domain-containing protein	NA	NA	NA	NA	NA
WP_059183022.1|818860_819226_+	hypothetical protein	NA	NA	NA	NA	NA
WP_059181239.1|819838_820633_-	DNA adenine methylase	NA	C7BGE1	Burkholderia_phage	66.8	7.9e-99
WP_059181240.1|820783_821326_-|lysis	lysis protein	lysis	B5TK84	Pseudomonas_phage	64.4	1.9e-51
WP_059181241.1|821307_821871_-	glycoside hydrolase family 19 protein	NA	B5TK83	Pseudomonas_phage	75.9	7.8e-77
WP_059181242.1|821927_822974_-	late control protein	NA	A0A2H4JBF6	uncultured_Caudovirales_phage	73.9	4.6e-147
WP_059181243.1|823056_823263_-|tail	tail protein X	tail	A0A2H4J9Z9	uncultured_Caudovirales_phage	70.1	1.3e-21
WP_059181244.1|823237_824098_-|tail	phage tail protein	tail	A0A2H4J875	uncultured_Caudovirales_phage	69.0	1.0e-104
WP_059181245.1|827004_827325_-|tail	phage tail assembly protein	tail	A0A2H4J873	uncultured_Caudovirales_phage	52.1	2.5e-19
WP_059181246.1|827338_827842_-|tail	phage major tail tube protein	tail	A0A2H4JBU0	uncultured_Caudovirales_phage	73.1	1.3e-67
WP_059181247.1|827854_829021_-|tail	phage tail sheath family protein	tail	A0A2H4J869	uncultured_Caudovirales_phage	80.1	2.4e-176
WP_059181248.1|829125_829683_-	DUF4376 domain-containing protein	NA	A0A1S5R1J2	Pseudomonas_phage	50.5	1.3e-23
WP_156428541.1|829685_830861_-|tail	tail fiber protein	tail	A0A2H4JF09	uncultured_Caudovirales_phage	51.6	6.7e-22
WP_059181250.1|831201_831810_-|tail	phage tail protein I	tail	A0A2H4JDH5	uncultured_Caudovirales_phage	70.7	1.6e-80
WP_059181251.1|831806_832694_-|plate	baseplate J/gp47 family protein	plate	A0A2H4JFK9	uncultured_Caudovirales_phage	67.2	1.3e-105
WP_059181252.1|832690_833017_-	GPW/gp25 family protein	NA	A0A2H4JA09	uncultured_Caudovirales_phage	60.4	1.3e-31
WP_059181253.1|833022_833262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_059181254.1|833317_833923_-|plate	phage baseplate assembly protein V	plate	A0A2H4JG06	uncultured_Caudovirales_phage	77.4	1.5e-54
WP_059181255.1|833919_834432_-	hypothetical protein	NA	A0A2H4J881	uncultured_Caudovirales_phage	63.3	7.2e-53
WP_059181256.1|834424_835090_-	hypothetical protein	NA	A0A2H4JBV1	uncultured_Caudovirales_phage	69.2	5.6e-82
WP_059181257.1|835086_835407_-	hypothetical protein	NA	A0A2H4J879	uncultured_Caudovirales_phage	69.8	8.2e-39
WP_059181258.1|835409_836405_-|capsid	major capsid protein	capsid	A0A2H4J890	uncultured_Caudovirales_phage	84.3	1.5e-160
WP_059181259.1|836467_836812_-|head	head decoration protein	head	A0A2H4JF15	uncultured_Caudovirales_phage	78.9	7.0e-44
WP_059181260.1|836808_837969_-|protease	Clp protease ClpP	protease	A0A2H4JDI2	uncultured_Caudovirales_phage	74.3	2.1e-148
WP_059181261.1|837965_839444_-|portal	phage portal protein	portal	A0A2H4JFL5	uncultured_Caudovirales_phage	84.4	1.2e-241
WP_059181262.1|839443_839650_-	hypothetical protein	NA	A0A2H4JA19	uncultured_Caudovirales_phage	80.9	1.2e-22
WP_059181263.1|839651_841661_-|terminase	phage terminase large subunit family protein	terminase	A0A2H4J898	uncultured_Caudovirales_phage	75.6	2.5e-303
WP_059181264.1|841666_842233_-	hypothetical protein	NA	A0A2H4JG15	uncultured_Caudovirales_phage	48.7	2.6e-40
WP_059181265.1|842400_842745_-|holin	pyocin R2, holin	holin	A0A2H4J893	uncultured_Caudovirales_phage	85.2	1.4e-47
WP_059181266.1|842838_843201_+	hypothetical protein	NA	NA	NA	NA	NA
WP_059181267.1|843733_844099_-	hypothetical protein	NA	NA	NA	NA	NA
844004:844019	attL	CATGTTCCCGCCGCTC	NA	NA	NA	NA
WP_059181268.1|844091_846311_-	conjugal transfer protein TraC	NA	A0A2D1GN57	Marinobacter_phage	47.6	2.9e-191
WP_082694299.1|846300_846528_-	TraR/DksA family transcriptional regulator	NA	A0A218M4I6	Erwinia_phage	44.0	7.6e-07
WP_059181269.1|846520_847039_-	hypothetical protein	NA	NA	NA	NA	NA
WP_059181270.1|847369_847600_-	hypothetical protein	NA	NA	NA	NA	NA
WP_059181271.1|847698_848346_+	peptidase S24	NA	A0A0M3LSL8	Mannheimia_phage	41.4	1.8e-13
WP_059181272.1|848391_849708_-	hypothetical protein	NA	NA	NA	NA	NA
WP_059181273.1|850081_850672_+	hypothetical protein	NA	NA	NA	NA	NA
WP_059181274.1|850682_850967_+	phage antirepressor KilAC domain-containing protein	NA	NA	NA	NA	NA
WP_156428503.1|850953_851133_+	hypothetical protein	NA	NA	NA	NA	NA
WP_059181275.1|851125_851443_+	pyocin activator PrtN family protein	NA	NA	NA	NA	NA
WP_059181276.1|851500_851920_+	hypothetical protein	NA	NA	NA	NA	NA
WP_059181277.1|851916_852138_+	hypothetical protein	NA	NA	NA	NA	NA
WP_059181278.1|852754_853027_+	pyocin activator PrtN family protein	NA	A0A2K8HN48	Pseudomonas_phage	64.8	3.7e-24
WP_059181279.1|853075_854311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_059181280.1|854303_855035_-	hypothetical protein	NA	NA	NA	NA	NA
WP_059181281.1|855034_856288_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_059181282.1|856300_857353_-	DNA cytosine methyltransferase	NA	Q83VT0	Escherichia_phage	29.1	1.9e-20
WP_059181283.1|857438_858533_-|integrase	site-specific integrase	integrase	L7TP61	Pseudomonas_virus	73.3	1.3e-155
WP_082694300.1|858635_859655_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
860134:860149	attR	CATGTTCCCGCCGCTC	NA	NA	NA	NA
>prophage 2
NZ_LN854573	Pseudomonas sp. URMO17WK12:I11 isolate Shine chromosome 1	6374437	1661005	1669684	6374437	holin	Pseudomonas_phage(57.14%)	8	NA	NA
WP_007907270.1|1661005_1662058_-	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	60.0	3.5e-110
WP_027925004.1|1662141_1662642_-	CinA family protein	NA	B5TK85	Pseudomonas_phage	85.5	1.4e-72
WP_059181536.1|1662859_1663423_-	glycoside hydrolase family 19 protein	NA	B5TK83	Pseudomonas_phage	80.1	9.5e-83
WP_027925002.1|1663551_1663899_-|holin	pyocin R2, holin	holin	B5TK61	Pseudomonas_phage	85.2	2.9e-50
WP_059183030.1|1664397_1665132_-	helix-turn-helix transcriptional regulator	NA	B5TK58	Pseudomonas_phage	95.1	1.1e-131
WP_172825953.1|1665345_1667913_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	24.4	1.2e-26
WP_027924999.1|1668055_1668379_+	ferredoxin family protein	NA	NA	NA	NA	NA
WP_059181537.1|1668586_1669684_+	acyltransferase	NA	A0A2H4JA46	uncultured_Caudovirales_phage	25.4	1.4e-13
>prophage 3
NZ_LN854573	Pseudomonas sp. URMO17WK12:I11 isolate Shine chromosome 1	6374437	3483866	3515510	6374437	holin,protease	Burkholderia_phage(40.0%)	28	NA	NA
WP_027926634.1|3483866_3485570_-|holin	choline dehydrogenase	holin	A0A1V0SI18	Klosneuvirus	29.6	1.0e-50
WP_027926635.1|3485741_3487214_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_027926636.1|3487322_3487916_-	transcriptional regulator BetI	NA	NA	NA	NA	NA
WP_027926637.1|3488237_3490244_+	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	25.8	9.1e-19
WP_027926638.1|3490443_3491622_-|holin	choline ABC transporter ATP-binding protein	holin	G3M9Y6	Bacillus_virus	36.6	8.5e-25
WP_027926639.1|3491618_3492464_-|holin	choline ABC transporter permease subunit	holin	NA	NA	NA	NA
WP_027926640.1|3492530_3493478_-|holin	choline ABC transporter substrate-binding protein	holin	NA	NA	NA	NA
WP_027926641.1|3493913_3495290_+	L-serine ammonia-lyase	NA	NA	NA	NA	NA
WP_027926642.1|3495830_3496934_+	GlxA family transcriptional regulator	NA	NA	NA	NA	NA
WP_059182043.1|3497021_3497285_-	hypothetical protein	NA	NA	NA	NA	NA
WP_059182044.1|3497673_3498837_-	gamma-butyrobetaine dioxygenase	NA	NA	NA	NA	NA
WP_027926645.1|3498851_3499328_-	thioesterase family protein	NA	NA	NA	NA	NA
WP_027926646.1|3499451_3500417_-	L-carnitine dehydrogenase	NA	NA	NA	NA	NA
WP_027926647.1|3500553_3501441_-	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA	NA
WP_027926648.1|3501544_3502489_-|holin	choline ABC transporter substrate-binding protein	holin	NA	NA	NA	NA
WP_059182045.1|3502697_3503657_+	GlxA family transcriptional regulator	NA	NA	NA	NA	NA
WP_027926650.1|3503793_3504210_-	DUF3010 family protein	NA	NA	NA	NA	NA
WP_027926651.1|3504242_3504566_-	helix-turn-helix transcriptional regulator	NA	A0A1S5NNJ5	Burkholderia_phage	67.6	1.3e-31
WP_027926652.1|3504549_3504804_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5NR91	Burkholderia_phage	65.5	4.5e-24
WP_027926653.1|3505017_3505419_-	DUF1311 domain-containing protein	NA	NA	NA	NA	NA
WP_008033250.1|3505653_3506631_+	dipeptidase	NA	NA	NA	NA	NA
WP_007947752.1|3506795_3507326_+	hypothetical protein	NA	NA	NA	NA	NA
WP_027926654.1|3507341_3509402_+	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA	NA
WP_027926655.1|3509564_3511514_+	dimethylglycine demethylation protein DgcB	NA	NA	NA	NA	NA
WP_027926656.1|3511513_3512734_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA	NA
WP_059182046.1|3512749_3513520_+	electron transfer flavoprotein subunit beta	NA	NA	NA	NA	NA
WP_027926658.1|3513645_3514212_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_059182047.1|3514343_3515510_+|protease	retroviral-like aspartic protease family protein	protease	NA	NA	NA	NA
>prophage 4
NZ_LN854573	Pseudomonas sp. URMO17WK12:I11 isolate Shine chromosome 1	6374437	4769030	4776177	6374437		Enterobacteria_phage(50.0%)	8	NA	NA
WP_059182368.1|4769030_4769339_+	integration host factor subunit beta	NA	A3E2K9	Sodalis_phage	41.1	1.5e-10
WP_059182369.1|4769350_4769590_+	LapA family protein	NA	NA	NA	NA	NA
WP_059182370.1|4769819_4770899_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	54.3	1.4e-98
WP_059182371.1|4770895_4771789_+	dTDP-4-dehydrorhamnose reductase	NA	I7HXC9	Enterobacteria_phage	33.3	1.2e-26
WP_059182372.1|4771785_4772664_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	66.6	1.3e-107
WP_059182373.1|4772819_4773875_+	LPS O-antigen chain length determinant protein WzzB	NA	NA	NA	NA	NA
WP_059182374.1|4773995_4774991_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	49.5	9.1e-44
WP_059182375.1|4775055_4776177_+	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	E5ES42	Bathycoccus_sp._RCC1105_virus	30.8	8.9e-40
>prophage 5
NZ_LN854573	Pseudomonas sp. URMO17WK12:I11 isolate Shine chromosome 1	6374437	5387702	5393958	6374437	tRNA	uncultured_Caudovirales_phage(83.33%)	8	NA	NA
WP_059182587.1|5387702_5388983_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	53.3	1.8e-97
WP_059182588.1|5388983_5390378_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_059182589.1|5390484_5391486_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_059182590.1|5391578_5392580_-	glycosyl transferase family protein	NA	A0A2H4JBY5	uncultured_Caudovirales_phage	84.1	4.8e-162
WP_027925139.1|5392576_5392912_-	TusE/DsrC/DsvC family sulfur relay protein	NA	A0A2H4J8B6	uncultured_Caudovirales_phage	79.3	6.1e-45
WP_027925140.1|5392908_5393202_-	sulfurtransferase complex subunit TusB	NA	A0A2H4JG28	uncultured_Caudovirales_phage	69.7	2.1e-33
WP_059182591.1|5393201_5393564_-	sulfurtransferase complex subunit TusC	NA	A0A2H4J8C0	uncultured_Caudovirales_phage	65.8	5.4e-39
WP_027925142.1|5393565_5393958_-	sulfurtransferase complex subunit TusD	NA	A0A2H4JA39	uncultured_Caudovirales_phage	80.6	2.2e-54
>prophage 6
NZ_LN854573	Pseudomonas sp. URMO17WK12:I11 isolate Shine chromosome 1	6374437	6019180	6024599	6374437	lysis,tail	uncultured_Caudovirales_phage(50.0%)	7	NA	NA
WP_059182870.1|6019180_6019396_+|tail	phage tail protein I	tail	A0A2H4JDH5	uncultured_Caudovirales_phage	62.5	3.2e-07
WP_082694359.1|6020450_6020588_+|tail	tail protein X	tail	A0A2H4J9Z9	uncultured_Caudovirales_phage	65.9	6.4e-09
WP_059182871.1|6020669_6021716_+	late control protein	NA	A0A2H4JBF6	uncultured_Caudovirales_phage	74.1	1.6e-147
WP_059182872.1|6021776_6022340_+	glycoside hydrolase family 19 protein	NA	B5TK83	Pseudomonas_phage	75.9	7.1e-78
WP_059182873.1|6022321_6022864_+|lysis	lysis protein	lysis	B5TK84	Pseudomonas_phage	64.4	9.3e-51
WP_059182874.1|6022984_6023215_-	hypothetical protein	NA	NA	NA	NA	NA
WP_082694360.1|6023303_6024599_-	S8 family serine peptidase	NA	A0A1B0T6A2	Bacillus_phage	31.8	5.9e-27
