The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013919	Listeria monocytogenes strain IZSAM_Lm_15_17439_A144 isolate A144 chromosome, complete genome	2905533	98064	108096	2905533		Tupanvirus(33.33%)	7	NA	NA
WP_009924391.1|98064_99519_-	glycoside hydrolase family 1 protein	NA	A0A0B5JD41	Pandoravirus	30.3	1.9e-50
WP_072215787.1|99546_99855_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012951082.1|100033_101644_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	29.5	1.2e-45
WP_012951083.1|101701_102232_+	ADP-ribose-binding protein	NA	A0A0K1L687	Scale_drop_disease_virus	49.3	3.4e-29
WP_003722118.1|102519_103986_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.0	8.0e-97
WP_003732117.1|104146_105919_+	DNA helicase RecQ	NA	A0A2K9L3P7	Tupanvirus	37.1	6.3e-80
WP_012951084.1|105942_108096_+	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	34.1	6.7e-44
>prophage 2
NZ_CP013919	Listeria monocytogenes strain IZSAM_Lm_15_17439_A144 isolate A144 chromosome, complete genome	2905533	1126485	1136038	2905533		Hokovirus(28.57%)	9	NA	NA
WP_003721506.1|1126485_1126869_+	glycerol-3-phosphate cytidylyltransferase	NA	A0A1V0SGE7	Hokovirus	40.7	1.4e-16
WP_003732709.1|1126890_1127874_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	34.6	4.1e-12
WP_010989660.1|1127888_1128902_+	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	32.0	7.9e-11
WP_003721509.1|1129110_1130601_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	49.7	9.5e-114
WP_003727000.1|1130612_1131437_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.6	9.7e-68
WP_012951453.1|1131449_1131758_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003730540.1|1131817_1132222_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_012951454.1|1132350_1133907_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	28.1	3.0e-17
WP_012951455.1|1134124_1136038_+	site-specific DNA-methyltransferase	NA	A0A2K5B2C1	Erysipelothrix_phage	36.9	1.3e-59
>prophage 3
NZ_CP013919	Listeria monocytogenes strain IZSAM_Lm_15_17439_A144 isolate A144 chromosome, complete genome	2905533	1257471	1338910	2905533	tail,portal,terminase,capsid,integrase,holin,tRNA,protease	Listeria_phage(83.08%)	104	1257353:1257369	1301208:1301224
1257353:1257369	attL	AATCCCTCTCAGGACGT	NA	NA	NA	NA
WP_059212360.1|1257471_1258626_-|integrase	site-specific integrase	integrase	A8ATC7	Listeria_phage	95.1	5.7e-207
WP_003730990.1|1258758_1259373_-	hypothetical protein	NA	A0A059T7Z1	Listeria_phage	77.0	7.7e-78
WP_059212361.1|1259422_1259875_-	ImmA/IrrE family metallo-endopeptidase	NA	R4IBK9	Listeria_phage	92.0	2.5e-78
WP_059212362.1|1259891_1260215_-	helix-turn-helix transcriptional regulator	NA	Q8W5Y0	Listeria_phage	71.0	4.5e-37
WP_025370565.1|1260675_1260993_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025370566.1|1261058_1261382_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003730994.1|1261529_1261733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009929536.1|1261799_1262003_+	helix-turn-helix transcriptional regulator	NA	A0A059T5F8	Listeria_phage	100.0	3.1e-28
WP_015987310.1|1262004_1262247_+	hypothetical protein	NA	A8ATD2	Listeria_phage	100.0	1.4e-43
WP_023548967.1|1262249_1262435_+	hypothetical protein	NA	A0A059T7Z3	Listeria_phage	98.4	4.4e-29
WP_009929542.1|1262669_1262822_+	hypothetical protein	NA	A8ATD4	Listeria_phage	100.0	1.5e-19
WP_009929543.1|1262958_1263672_+	SAM-dependent DNA methyltransferase	NA	A8ATD5	Listeria_phage	98.7	2.4e-131
WP_025370567.1|1263682_1264627_+|integrase	site-specific integrase	integrase	A8ATD6	Listeria_phage	97.1	1.0e-174
WP_025370568.1|1264639_1265326_+	hypothetical protein	NA	A8ATD7	Listeria_phage	88.4	4.1e-112
WP_059212363.1|1265869_1266433_+	pentapeptide repeat-containing protein	NA	A8ATE4	Listeria_phage	87.4	1.3e-36
WP_059212364.1|1266560_1267169_+	hypothetical protein	NA	A8ATU1	Listeria_phage	49.0	4.1e-55
WP_014601397.1|1267180_1267756_+	DUF1642 domain-containing protein	NA	B6D7L5	Listeria_phage	41.5	1.9e-25
WP_003731819.1|1267752_1268019_+	hypothetical protein	NA	R4IBL5	Listeria_phage	84.9	1.9e-33
WP_003747322.1|1268015_1268276_+	DUF3850 domain-containing protein	NA	A0A059T7N3	Listeria_phage	65.3	3.1e-20
WP_003747324.1|1268266_1268434_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014601398.1|1268430_1268892_+	hypothetical protein	NA	D9J0I6	Brochothrix_phage	29.9	5.5e-12
WP_050802639.1|1269079_1269325_+	hypothetical protein	NA	R4ICD9	Listeria_phage	63.0	2.7e-26
WP_014601401.1|1269321_1269501_+	hypothetical protein	NA	R4IBL7	Listeria_phage	82.5	1.1e-16
WP_014601402.1|1269501_1269936_+	hypothetical protein	NA	R4IDY3	Listeria_phage	99.3	1.4e-73
WP_059212365.1|1269932_1270199_+	hypothetical protein	NA	R4IBK0	Listeria_phage	92.0	6.8e-39
WP_176885284.1|1270195_1270369_+	hypothetical protein	NA	A0A059T5G3	Listeria_phage	98.2	1.2e-23
WP_003731666.1|1270365_1270743_+	hypothetical protein	NA	A8ATE8	Listeria_phage	65.4	8.7e-40
WP_059212366.1|1270746_1271226_+	siphovirus Gp157 family protein	NA	R4IBM0	Listeria_phage	98.7	1.0e-77
WP_059212367.1|1271238_1271928_+	AAA family ATPase	NA	R4IDY8	Listeria_phage	99.1	6.3e-129
WP_149805937.1|1271991_1273248_+	DEAD/DEAH box helicase family protein	NA	R4IBK4	Listeria_phage	98.5	2.4e-227
WP_023552348.1|1273270_1273753_+	DUF669 domain-containing protein	NA	A8ATF2	Listeria_phage	97.5	1.3e-85
WP_059212368.1|1273775_1276049_+	DNA primase	NA	R4IBW2	Listeria_phage	95.8	0.0e+00
WP_031672547.1|1276341_1276659_+	VRR-NUC domain-containing protein	NA	A8ATF4	Listeria_phage	97.1	1.9e-51
WP_003731659.1|1276660_1276873_+	hypothetical protein	NA	NA	NA	NA	NA
WP_059212369.1|1277319_1277859_+	DUF3310 domain-containing protein	NA	A8ATF5	Listeria_phage	73.7	1.0e-70
WP_025370581.1|1277855_1278125_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003731656.1|1278153_1278309_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003731655.1|1278369_1278597_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003731654.1|1278609_1279035_+	DUF722 domain-containing protein	NA	A0A059T6H4	Listeria_phage	99.3	1.8e-73
WP_003731652.1|1279720_1280035_+	HNH endonuclease	NA	A8ATF8	Listeria_phage	98.1	3.2e-56
WP_031646261.1|1280083_1280440_+|terminase	P27 family phage terminase small subunit	terminase	A8AT94	Listeria_phage	98.0	2.6e-46
WP_059212370.1|1280436_1282080_+|terminase	terminase large subunit	terminase	A0A059T7Q8	Listeria_phage	98.5	0.0e+00
WP_003731649.1|1282091_1283222_+|portal	phage portal protein	portal	A8AT96	Listeria_phage	92.8	3.7e-203
WP_031669132.1|1283218_1284025_+|protease	Clp protease ClpP	protease	A0A059T5F2	Listeria_phage	93.3	3.8e-133
WP_015987289.1|1284051_1285203_+|capsid	phage major capsid protein	capsid	A8AT98	Listeria_phage	100.0	1.1e-215
WP_015987290.1|1285209_1285380_+	hypothetical protein	NA	A8AT99	Listeria_phage	100.0	6.3e-22
WP_003731645.1|1285389_1285689_+	hypothetical protein	NA	A8ATA0	Listeria_phage	100.0	5.3e-48
WP_003731644.1|1285672_1286038_+	hypothetical protein	NA	A8ATA1	Listeria_phage	100.0	1.3e-64
WP_031668024.1|1286034_1286436_+	hypothetical protein	NA	A8ATA2	Listeria_phage	98.5	8.1e-68
WP_012581456.1|1286432_1286816_+	hypothetical protein	NA	A8ATA3	Listeria_phage	100.0	3.8e-67
WP_031668023.1|1286837_1287425_+|tail	phage tail protein	tail	A8ATA4	Listeria_phage	99.0	3.4e-107
WP_009917698.1|1287496_1287829_+	hypothetical protein	NA	A8ATA5	Listeria_phage	99.1	1.8e-52
WP_167797583.1|1287879_1288041_+	hypothetical protein	NA	A8ATA6	Listeria_phage	100.0	1.9e-20
WP_059212371.1|1288044_1293012_+|tail	phage tail tape measure protein	tail	A0A059T5F4	Listeria_phage	80.4	0.0e+00
WP_059212372.1|1292999_1294649_+|tail	phage tail family protein	tail	A0A059T682	Listeria_phage	98.5	0.0e+00
WP_025370594.1|1294661_1296956_+|tail	phage tail protein	tail	A0A059T7Y6	Listeria_phage	98.7	0.0e+00
WP_025370595.1|1296945_1298037_+	hypothetical protein	NA	A0A059T7R4	Listeria_phage	91.8	1.1e-188
WP_003733957.1|1298087_1298393_+	hypothetical protein	NA	A0A059T5E6	Listeria_phage	100.0	1.8e-43
WP_003723294.1|1298392_1298674_+|holin	phage holin	holin	A8ATW3	Listeria_phage	100.0	3.0e-45
WP_025370596.1|1298673_1299381_+	M15 family metallopeptidase	NA	A8ATW4	Listeria_phage	97.9	1.0e-129
WP_025370597.1|1299528_1300230_+	DUF3800 domain-containing protein	NA	R4IBV1	Listeria_phage	97.8	6.4e-129
WP_014930932.1|1300708_1300942_+	hypothetical protein	NA	A8ATX0	Listeria_phage	94.8	2.3e-35
WP_031672409.1|1300938_1301130_+	hypothetical protein	NA	A8ATC6	Listeria_phage	98.4	1.7e-28
WP_012951565.1|1301589_1302948_+	DUF1254 domain-containing protein	NA	NA	NA	NA	NA
1301208:1301224	attR	AATCCCTCTCAGGACGT	NA	NA	NA	NA
WP_012951566.1|1302988_1303582_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_009914084.1|1303735_1304143_-	glyoxalase/bleomycin resistance/extradiol dioxygenase family protein	NA	NA	NA	NA	NA
WP_009924169.1|1304307_1304907_+	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	41.0	5.8e-30
WP_003723543.1|1304938_1305199_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010989717.1|1305322_1306735_+	ATP-dependent RNA helicase DbpA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	31.8	8.3e-51
WP_003723545.1|1306759_1307023_+	DUF3116 family protein	NA	NA	NA	NA	NA
WP_003723546.1|1307190_1307667_+	8-oxo-dGTP diphosphatase	NA	NA	NA	NA	NA
WP_012951567.1|1307704_1307950_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012951568.1|1307946_1309152_-	MFS transporter	NA	NA	NA	NA	NA
WP_003723549.1|1309356_1310016_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_003723550.1|1310057_1310252_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003723551.1|1310318_1311167_-	YitT family protein	NA	NA	NA	NA	NA
WP_003723553.1|1311498_1311636_-	hypothetical protein	NA	NA	NA	NA	NA
WP_059212373.1|1311786_1312500_+	trehalose operon repressor	NA	NA	NA	NA	NA
WP_012951570.1|1312530_1314177_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA	NA
WP_003723556.1|1314195_1315680_-	PTS system trehalose-specific EIIBC component	NA	NA	NA	NA	NA
WP_003723557.1|1315795_1316248_+	NUDIX domain-containing protein	NA	NA	NA	NA	NA
WP_012951571.1|1316294_1316759_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003723559.1|1316947_1317868_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003723560.1|1317887_1319135_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	51.8	1.2e-106
WP_003723561.1|1319118_1319949_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	42.4	4.3e-47
WP_003723562.1|1320084_1321224_-|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003723563.1|1321304_1321700_-	helix-turn-helix transcriptional regulator	NA	A9D9J6	Lactobacillus_prophage	57.4	1.3e-14
WP_003727524.1|1321850_1322066_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010989719.1|1322184_1322718_+|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
WP_003732795.1|1322735_1323401_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003732796.1|1323662_1324601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003723884.1|1324715_1325999_+	trigger factor	NA	NA	NA	NA	NA
WP_003723886.1|1326183_1327443_+|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.2	1.4e-145
WP_003723887.1|1327561_1328128_+	type I signal peptidase SipX	NA	NA	NA	NA	NA
WP_009924619.1|1328162_1328732_+	type I signal peptidase SipY	NA	NA	NA	NA	NA
WP_003723889.1|1328833_1329376_+	type I signal peptidase SipZ	NA	NA	NA	NA	NA
WP_003723890.1|1329385_1330249_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_003723891.1|1330245_1331031_+	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	39.2	3.0e-26
WP_003723892.1|1331164_1332025_+	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_012951572.1|1332296_1334375_+	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	37.5	3.2e-107
WP_009924616.1|1334437_1335742_+|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
WP_009911635.1|1336024_1336927_+	tyrosine recombinase XerC	NA	A0A097EYL9	Mycobacterium_phage	28.6	1.2e-13
WP_003724001.1|1336947_1337487_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003732800.1|1337500_1338910_+|protease	ATP-dependent protease ATPase subunit HslU	protease	W6AS21	Erwinia_phage	28.7	3.7e-43
>prophage 4
NZ_CP013919	Listeria monocytogenes strain IZSAM_Lm_15_17439_A144 isolate A144 chromosome, complete genome	2905533	1872012	1880298	2905533		Synechococcus_phage(33.33%)	8	NA	NA
WP_003722243.1|1872012_1872579_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.9	7.0e-25
WP_012951771.1|1872575_1873625_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.5	4.6e-62
WP_003722245.1|1873643_1875071_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.6	1.1e-53
WP_025370613.1|1875055_1877275_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.1	1.7e-159
WP_003722247.1|1877267_1877951_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_003722248.1|1877954_1878200_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_012951773.1|1878211_1878925_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	38.3	1.2e-42
WP_003729814.1|1879005_1880298_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.0	2.5e-17
>prophage 5
NZ_CP013919	Listeria monocytogenes strain IZSAM_Lm_15_17439_A144 isolate A144 chromosome, complete genome	2905533	2534011	2541855	2905533		Streptococcus_phage(50.0%)	7	NA	NA
WP_003722604.1|2534011_2534983_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.4	5.2e-52
WP_003722605.1|2534990_2535959_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	43.3	6.7e-68
WP_003722606.1|2535960_2536836_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.7	1.9e-08
WP_012952017.1|2536943_2538674_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	54.0	3.0e-175
WP_012952018.1|2538715_2539777_-	galactose mutarotase	NA	NA	NA	NA	NA
WP_012952019.1|2539793_2540777_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	37.2	5.8e-51
WP_003722610.1|2540895_2541855_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	53.7	2.0e-88
>prophage 6
NZ_CP013919	Listeria monocytogenes strain IZSAM_Lm_15_17439_A144 isolate A144 chromosome, complete genome	2905533	2775284	2781809	2905533	tail	Streptococcus_pyogenes_phage(33.33%)	10	NA	NA
WP_003734720.1|2775284_2776103_-|tail	phage tail family protein	tail	A0A060AFE1	Staphylococcus_phage	35.0	7.2e-39
WP_012952081.1|2776099_2777968_-	membrane protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	45.8	3.5e-20
WP_012952082.1|2777954_2778359_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003721745.1|2778400_2778703_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003721744.1|2778750_2779263_-|tail	phage major tail protein, TP901-1 family	tail	A0A097PBF4	Streptococcus_pyogenes_phage	62.7	1.2e-47
WP_012952083.1|2779275_2779665_-	DUF5072 family protein	NA	NA	NA	NA	NA
WP_003732220.1|2779942_2780359_-	hypothetical protein	NA	A8ASQ1	Listeria_phage	39.3	1.3e-20
WP_003732219.1|2780370_2780799_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003721740.1|2781015_2781351_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JAR9	uncultured_Caudovirales_phage	52.5	4.0e-20
WP_003721739.1|2781356_2781809_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A059T7S0	Listeria_phage	47.9	4.0e-31
