The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013939	Streptococcus thermophilus strain S9 chromosome, complete genome	1787436	158012	172326	1787436	bacteriocin,transposase	Streptococcus_phage(25.0%)	18	NA	NA
WP_059257326.1|158012_159188_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	27.4	2.6e-34
WP_041827013.1|159378_161559_+	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	32.7	2.4e-65
WP_002947843.1|161679_162855_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	27.8	1.8e-35
WP_011681063.1|163185_163386_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	89.4	2.9e-26
WP_002944716.1|163665_163866_-	cold shock domain-containing protein	NA	A0A1X9IGI9	Lactococcus_phage	53.1	1.1e-12
WP_080998416.1|163996_164215_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
WP_011225841.1|164165_164402_-	peptide hydrolase	NA	NA	NA	NA	NA
WP_101361296.1|164408_164978_-	C69 family dipeptidase	NA	NA	NA	NA	NA
WP_011227121.1|164937_165159_-	dipeptidase, truncated	NA	NA	NA	NA	NA
WP_002945081.1|165176_166088_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	64.7	7.1e-104
WP_059257327.1|166084_167059_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	73.1	7.6e-136
WP_011225838.1|167055_167946_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	28.9	3.3e-05
WP_011227118.1|167926_168697_-	DUF1003 domain-containing protein	NA	NA	NA	NA	NA
WP_011225836.1|168901_169090_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002946191.1|169909_170401_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	56.7	1.4e-45
WP_011225834.1|170520_171237_-	7-carboxy-7-deazaguanine synthase QueE	NA	E7DN68	Pneumococcus_phage	48.1	1.8e-62
WP_002950528.1|171229_171673_-	6-carboxytetrahydropterin synthase QueD	NA	J9PV91	Bacillus_phage	55.6	7.9e-40
WP_002946194.1|171672_172326_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	55.4	2.8e-62
>prophage 2
NZ_CP013939	Streptococcus thermophilus strain S9 chromosome, complete genome	1787436	212891	221816	1787436		Bacillus_phage(50.0%)	8	NA	NA
WP_059257331.1|212891_214442_-	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9KZV5	Tupanvirus	29.5	2.0e-42
WP_002885174.1|214450_214582_-	teichoic acid D-Ala incorporation-associated protein DltX	NA	NA	NA	NA	NA
WP_059257332.1|214758_216507_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.7	9.3e-52
WP_059257333.1|216496_218236_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.2	2.6e-46
WP_041827001.1|218268_218880_-	lysozyme family protein	NA	A0A223LKM8	Bacillus_phage	41.6	3.5e-22
WP_011225791.1|218881_219859_-	nucleoid-associated protein	NA	NA	NA	NA	NA
WP_011227085.1|219865_221116_-	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	52.1	2.0e-96
WP_011227084.1|221210_221816_-	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	32.7	1.0e-18
>prophage 3
NZ_CP013939	Streptococcus thermophilus strain S9 chromosome, complete genome	1787436	328213	338161	1787436		Streptococcus_phage(85.71%)	9	NA	NA
WP_011225709.1|328213_328891_-	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	99.6	5.6e-122
WP_002950251.1|328887_330051_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	99.5	5.9e-220
WP_002947233.1|330212_332399_+	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	99.2	0.0e+00
WP_011225708.1|332896_334201_-	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	99.5	3.2e-246
WP_002950250.1|334409_334865_+	YueI family protein	NA	W6LLD2	Streptococcus_phage	98.7	1.3e-77
WP_011227015.1|334903_336019_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	99.3	4.4e-156
WP_011225706.1|336033_336798_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011225705.1|336903_337101_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004197422.1|337159_338161_-	catabolite control protein A	NA	C6ZCU4	Enterobacteria_phage	27.3	3.7e-21
>prophage 4
NZ_CP013939	Streptococcus thermophilus strain S9 chromosome, complete genome	1787436	578678	586397	1787436	transposase	Streptococcus_phage(50.0%)	8	NA	NA
WP_041826943.1|578678_579632_+|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	35.2	1.3e-36
WP_011225518.1|579661_580210_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_002949747.1|580288_580951_-	ComF family protein	NA	NA	NA	NA	NA
WP_011226886.1|580931_582251_-	DEAD/DEAH box helicase	NA	A0A1X9I5S6	Streptococcus_phage	52.8	7.6e-123
WP_002949745.1|582305_582932_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	60.4	6.7e-69
WP_002947179.1|583033_583960_+	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	79.2	3.7e-140
WP_002947183.1|584922_585633_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.7	2.2e-15
WP_002947187.1|585632_586397_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.2	5.2e-15
>prophage 5
NZ_CP013939	Streptococcus thermophilus strain S9 chromosome, complete genome	1787436	1231132	1291825	1787436	transposase,protease,integrase,bacteriocin,tRNA	Bacillus_virus(25.0%)	60	1241301:1241316	1295392:1295407
WP_011226496.1|1231132_1231294_+|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
WP_002948870.1|1231311_1232652_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_002948869.1|1232651_1233383_-	response regulator transcription factor	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	20.9	5.9e-08
WP_011227518.1|1233632_1233875_+|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
WP_049749297.1|1235453_1235774_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011227515.1|1235853_1238121_-	Xaa-Pro dipeptidyl-peptidase	NA	NA	NA	NA	NA
WP_059257387.1|1238241_1239105_+	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	34.4	5.1e-27
WP_011227514.1|1239278_1239665_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_059257318.1|1239774_1240728_-|transposase	IS30 family transposase	transposase	H7BVY4	unidentified_phage	36.8	9.3e-38
WP_011681560.1|1241080_1241836_+	peptidase	NA	NA	NA	NA	NA
1241301:1241316	attL	ATAAAGTGGTCATTAA	NA	NA	NA	NA
WP_002951776.1|1241835_1242792_+	serine hydrolase	NA	NA	NA	NA	NA
WP_041827092.1|1242766_1242997_+	hypothetical protein	NA	NA	NA	NA	NA
WP_022096490.1|1242993_1243644_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	31.5	1.1e-21
WP_002951770.1|1243640_1244396_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_011227510.1|1244471_1245158_+	hypothetical protein	NA	NA	NA	NA	NA
WP_082302977.1|1245345_1245840_+|integrase	tyrosine-type recombinase/integrase	integrase	D2XR58	Bacillus_phage	36.4	1.4e-16
WP_011227508.1|1246316_1246535_+	plasmid mobilization protein, truncated	NA	NA	NA	NA	NA
WP_041827162.1|1246543_1246834_+	plasmid mobilization protein	NA	NA	NA	NA	NA
WP_011227507.1|1246852_1247176_+	type I restriction-modification system subunit S	NA	NA	NA	NA	NA
WP_011226473.1|1249062_1251372_-	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	32.4	8.1e-112
WP_011227504.1|1251649_1252753_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_002947030.1|1253038_1253272_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041827091.1|1253852_1254680_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_041827161.1|1254888_1255815_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_011226469.1|1255814_1256558_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	41.0	1.5e-30
WP_011226468.1|1256772_1256997_+	DUF4059 family protein	NA	NA	NA	NA	NA
WP_011226467.1|1257062_1257983_+	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	52.0	4.7e-87
WP_011227500.1|1258073_1258673_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_011226465.1|1258706_1259204_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	28.8	8.3e-14
WP_044018119.1|1259220_1260258_+	PDZ domain-containing protein	NA	NA	NA	NA	NA
WP_011226463.1|1260342_1261287_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	48.3	8.6e-36
WP_004197152.1|1261283_1261832_+	SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	43.5	4.5e-37
WP_011227499.1|1261828_1262071_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011227498.1|1262079_1264146_+	sodium:proton antiporter	NA	NA	NA	NA	NA
WP_011226459.1|1264764_1265547_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	5.9e-14
WP_002951727.1|1265659_1266991_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_157821721.1|1267670_1267799_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_002946980.1|1267986_1268787_+	pyruvate formate lyase-activating protein	NA	A0A2P0VNQ0	Tetraselmis_virus	31.8	2.9e-24
WP_002946987.1|1270429_1270882_-	universal stress protein	NA	NA	NA	NA	NA
WP_011226456.1|1271236_1272451_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_002951720.1|1272710_1273496_+	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA	NA
WP_002946999.1|1273558_1274110_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	40.3	2.6e-24
WP_041828318.1|1274232_1275081_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002946589.1|1275092_1275602_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_011226450.1|1277511_1277721_+	glycosyl transferase	NA	NA	NA	NA	NA
WP_011226449.1|1277733_1277988_+	glycosyl transferase	NA	NA	NA	NA	NA
WP_002884769.1|1278127_1278430_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_002946584.1|1278429_1279896_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_002946582.1|1279895_1281338_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_011226448.1|1281435_1281819_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011226447.1|1281895_1282810_+	EamA family transporter	NA	NA	NA	NA	NA
WP_002951705.1|1282946_1283474_+	YqeG family HAD IIIA-type phosphatase	NA	NA	NA	NA	NA
WP_002951703.1|1283473_1284592_+	ribosome biogenesis GTPase YqeH	NA	NA	NA	NA	NA
WP_002951701.1|1284830_1285148_+	ribosome assembly RNA-binding protein YhbY	NA	NA	NA	NA	NA
WP_011226445.1|1285251_1285884_+	nicotinate-nucleotide adenylyltransferase	NA	G3MA22	Bacillus_virus	31.4	3.2e-18
WP_002951696.1|1285880_1286471_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_011227491.1|1286494_1286848_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_041827088.1|1287103_1287913_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_011227489.1|1287919_1289011_+	nucleotidyltransferase	NA	NA	NA	NA	NA
WP_059257388.1|1289725_1291825_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	39.5	3.2e-123
1295392:1295407	attR	TTAATGACCACTTTAT	NA	NA	NA	NA
