assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001515705.1_ASM151570v1	NZ_CP012018	Staphylococcus aureus subsp. aureus strain Gv88 chromosome, complete genome	1	443775-443875	1	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|70aa|up_7|NZ_CP012018.1_435349_435559_-,NA|128aa|up_5|NZ_CP012018.1_436383_436767_-,NA|34aa|up_0|NZ_CP012018.1_442999_443101_+,NA|221aa|down_1|NZ_CP012018.1_444965_445628_-	NA|88aa|up_9|NZ_CP012018.1_434496_434760_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|84aa|up_8|NZ_CP012018.1_435059_435311_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_7|NZ_CP012018.1_435349_435559_-	NA	NA|194aa|up_6|NZ_CP012018.1_435736_436318_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_5|NZ_CP012018.1_436383_436767_-	NA	NA|209aa|up_4|NZ_CP012018.1_437021_437648_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|190aa|up_3|NZ_CP012018.1_439629_440199_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP012018.1_440690_441446_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP012018.1_441526_442915_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NZ_CP012018.1_442999_443101_+	NA	NA|319aa|down_0|NZ_CP012018.1_443891_444848_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP012018.1_444965_445628_-	NA	NA|136aa|down_2|NZ_CP012018.1_445770_446178_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP012018.1_446690_447269_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP012018.1_447268_448537_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP012018.1_448574_450041_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP012018.1_450065_451607_+	PRK00074, guaA, GMP synthase; Reviewed	NA|398aa|down_7|NZ_CP012018.1_451674_452868_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|67aa|down_8|NZ_CP012018.1_452894_453095_-	pfam11372, DUF3173, Domain of unknown function (DUF3173)	NA|77aa|down_9|NZ_CP012018.1_453592_453823_-	pfam12645, HTH_16, Helix-turn-helix domain
GCF_001515705.1_ASM151570v1	NZ_CP012018	Staphylococcus aureus subsp. aureus strain Gv88 chromosome, complete genome	2	709405-709497	2	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|36aa|up_3|NZ_CP012018.1_705888_705996_+,NA|169aa|down_4|NZ_CP012018.1_713244_713751_+,NA|239aa|down_5|NZ_CP012018.1_713912_714629_+	NA|313aa|up_9|NZ_CP012018.1_700090_701029_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP012018.1_701239_701776_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP012018.1_701944_702421_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP012018.1_702460_703756_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP012018.1_703783_704305_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP012018.1_704803_705814_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP012018.1_705888_705996_+	NA	NA|139aa|up_2|NZ_CP012018.1_706088_706505_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP012018.1_706501_708163_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP012018.1_708551_709187_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|NZ_CP012018.1_709565_710453_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP012018.1_710600_711551_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP012018.1_711605_712325_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP012018.1_712308_713109_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP012018.1_713244_713751_+	NA	NA|239aa|down_5|NZ_CP012018.1_713912_714629_+	NA	NA|263aa|down_6|NZ_CP012018.1_714797_715586_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP012018.1_715836_716211_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_CP012018.1_717159_718089_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_CP012018.1_718283_718508_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_001515705.1_ASM151570v1	NZ_CP012018	Staphylococcus aureus subsp. aureus strain Gv88 chromosome, complete genome	3	829649-829731	3	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|69aa|up_9|NZ_CP012018.1_816249_816456_+,NA|34aa|down_1|NZ_CP012018.1_831187_831289_+,NA|52aa|down_8|NZ_CP012018.1_839468_839624_+	NA|69aa|up_9|NZ_CP012018.1_816249_816456_+	NA	NA|237aa|up_8|NZ_CP012018.1_816543_817254_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NZ_CP012018.1_817237_818242_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NZ_CP012018.1_818715_820656_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NZ_CP012018.1_820926_822810_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NZ_CP012018.1_822821_824603_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NZ_CP012018.1_824824_825802_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_CP012018.1_825794_827309_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_CP012018.1_827548_828607_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_CP012018.1_828957_829500_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NZ_CP012018.1_830179_831097_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NZ_CP012018.1_831187_831289_+	NA	NA|502aa|down_2|NZ_CP012018.1_831366_832872_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NZ_CP012018.1_833212_833713_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NZ_CP012018.1_833732_834599_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NZ_CP012018.1_835399_835798_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NZ_CP012018.1_835760_837866_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NZ_CP012018.1_837983_838955_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NZ_CP012018.1_839468_839624_+	NA	NA|324aa|down_9|NZ_CP012018.1_839662_840634_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_001515705.1_ASM151570v1	NZ_CP012018	Staphylococcus aureus subsp. aureus strain Gv88 chromosome, complete genome	4	870701-870781	4	CRISPRCasFinder	no	cas3	csa3,WYL,cas3,DEDDh,DinG	Unclear	TTCTTTATGTTGGGGCCCCGCCAACT	26	1	10	870727-870755|870727-870755|870727-870755|870727-870755|870727-870755|870727-870755|870727-870755|870727-870755|870727-870755|870727-870755	NZ_CP012018.1_390275-390247|NZ_CP012018.1_390330-390302|NZ_CP012018.1_1959440-1959412|NZ_CP012018.1_312006-311978|NZ_CP012018.1_920593-920621|NZ_CP012018.1_1003287-1003315|NZ_CP012018.1_1244968-1244940|NZ_CP012018.1_1773405-1773433|NZ_CP012018.1_2127317-2127345|NZ_CP012018.1_2678300-2678272	NA	1	1	Unclear	csa3,WYL,cas3,DEDDh,DinG	NA|35aa|up_7|NZ_CP012018.1_861614_861719_+,NA|36aa|up_5|NZ_CP012018.1_863151_863259_+,NA	NA|191aa|up_9|NZ_CP012018.1_858055_858628_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP012018.1_859041_861573_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP012018.1_861614_861719_+	NA	NA|370aa|up_6|NZ_CP012018.1_861887_862998_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP012018.1_863151_863259_+	NA	NA|280aa|up_4|NZ_CP012018.1_863406_864246_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP012018.1_864419_865070_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP012018.1_865066_865303_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP012018.1_865571_867557_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP012018.1_867564_870411_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP012018.1_871017_871950_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP012018.1_871955_872795_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP012018.1_872802_873288_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP012018.1_873295_874735_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP012018.1_874801_875737_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP012018.1_876502_877414_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP012018.1_877410_878406_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP012018.1_878515_879460_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP012018.1_880032_880620_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP012018.1_880862_881765_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_001515705.1_ASM151570v1	NZ_CP012018	Staphylococcus aureus subsp. aureus strain Gv88 chromosome, complete genome	5	920527-920608	5	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	920551-920584|920551-920584	NZ_CP012018.1_1455859-1455826|NZ_CP012018.1_1548413-1548446	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA,NA	NA|194aa|up_9|NZ_CP012018.1_913630_914212_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP012018.1_914284_914902_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP012018.1_915056_915551_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP012018.1_915949_916372_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP012018.1_916519_917236_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP012018.1_917318_917858_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP012018.1_918007_918328_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP012018.1_918471_918828_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP012018.1_918985_919366_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP012018.1_919544_920423_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP012018.1_921164_921551_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP012018.1_921543_921840_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP012018.1_922089_923115_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP012018.1_923107_923803_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP012018.1_923820_924642_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NZ_CP012018.1_924785_926006_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|463aa|down_6|NZ_CP012018.1_926019_927408_-	pfam02037, SAP, SAP domain	NA|191aa|down_7|NZ_CP012018.1_927434_928007_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|74aa|down_8|NZ_CP012018.1_928178_928400_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|91aa|down_9|NZ_CP012018.1_928400_928673_+	pfam13545, HTH_Crp_2, Crp-like helix-turn-helix domain
GCF_001515705.1_ASM151570v1	NZ_CP012018	Staphylococcus aureus subsp. aureus strain Gv88 chromosome, complete genome	6	1117045-1117132	6	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA,NA|45aa|down_0|NZ_CP012018.1_1117141_1117276_-,NA|432aa|down_1|NZ_CP012018.1_1117427_1118723_+	NA|224aa|up_9|NZ_CP012018.1_1104835_1105507_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_8|NZ_CP012018.1_1105499_1107689_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_7|NZ_CP012018.1_1107667_1109152_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_6|NZ_CP012018.1_1109144_1110173_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|NZ_CP012018.1_1110175_1110742_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|NZ_CP012018.1_1110756_1112235_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|NZ_CP012018.1_1112256_1113504_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_2|NZ_CP012018.1_1113768_1114575_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_1|NZ_CP012018.1_1114567_1115968_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|NZ_CP012018.1_1115982_1116558_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|NZ_CP012018.1_1117141_1117276_-	NA	NA|432aa|down_1|NZ_CP012018.1_1117427_1118723_+	NA	NA|391aa|down_2|NZ_CP012018.1_1119147_1120320_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NZ_CP012018.1_1120373_1120916_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NZ_CP012018.1_1121069_1121336_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NZ_CP012018.1_1121338_1123057_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NZ_CP012018.1_1123293_1123527_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NZ_CP012018.1_1123724_1125086_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NZ_CP012018.1_1125082_1126102_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NZ_CP012018.1_1126234_1126897_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_001515705.1_ASM151570v1	NZ_CP012018	Staphylococcus aureus subsp. aureus strain Gv88 chromosome, complete genome	7	1245002-1245087	7	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	5	1245032-1245057|1245032-1245057|1245032-1245057|1245032-1245057|1245032-1245057	NZ_CP012018.1_311846-311871|NZ_CP012018.1_839177-839202|NZ_CP012018.1_876154-876129|NZ_CP012018.1_839121-839146|NZ_CP012018.1_839233-839258	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|31aa|up_9|NZ_CP012018.1_1237572_1237665_-,NA|169aa|up_7|NZ_CP012018.1_1238697_1239204_+,NA|62aa|up_4|NZ_CP012018.1_1241285_1241471_-,NA|78aa|up_3|NZ_CP012018.1_1242092_1242326_-,NA|49aa|up_1|NZ_CP012018.1_1244434_1244581_+,NA|75aa|up_0|NZ_CP012018.1_1244537_1244762_+,NA|76aa|down_6|NZ_CP012018.1_1252061_1252289_+	NA|31aa|up_9|NZ_CP012018.1_1237572_1237665_-	NA	NA|134aa|up_8|NZ_CP012018.1_1237624_1238026_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_7|NZ_CP012018.1_1238697_1239204_+	NA	NA|166aa|up_6|NZ_CP012018.1_1239462_1239960_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_5|NZ_CP012018.1_1240113_1240464_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_4|NZ_CP012018.1_1241285_1241471_-	NA	NA|78aa|up_3|NZ_CP012018.1_1242092_1242326_-	NA	NA|320aa|up_2|NZ_CP012018.1_1242802_1243762_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|up_1|NZ_CP012018.1_1244434_1244581_+	NA	NA|75aa|up_0|NZ_CP012018.1_1244537_1244762_+	NA	NA|239aa|down_0|NZ_CP012018.1_1245262_1245979_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|NZ_CP012018.1_1246086_1246812_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_2|NZ_CP012018.1_1246906_1247632_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_3|NZ_CP012018.1_1248069_1249071_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_4|NZ_CP012018.1_1249093_1250026_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|519aa|down_5|NZ_CP012018.1_1250197_1251754_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_6|NZ_CP012018.1_1252061_1252289_+	NA	NA|316aa|down_7|NZ_CP012018.1_1252593_1253541_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_8|NZ_CP012018.1_1253789_1253978_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_9|NZ_CP012018.1_1254889_1255024_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCF_001515705.1_ASM151570v1	NZ_CP012018	Staphylococcus aureus subsp. aureus strain Gv88 chromosome, complete genome	8	2116596-2116674	8	CRISPRCasFinder	no	DEDDh	csa3,WYL,cas3,DEDDh,DinG	Unclear	AATTTCTCTATGTTGGGGCCCCG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|92aa|up_6|NZ_CP012018.1_2110800_2111076_+,NA|129aa|up_1|NZ_CP012018.1_2115061_2115448_-,NA|138aa|down_1|NZ_CP012018.1_2118311_2118725_-,NA|37aa|down_2|NZ_CP012018.1_2118753_2118864_-,NA|31aa|down_6|NZ_CP012018.1_2121869_2121962_-	NA|419aa|up_9|NZ_CP012018.1_2108723_2109980_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_CP012018.1_2109982_2110183_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_CP012018.1_2110329_2110794_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_CP012018.1_2110800_2111076_+	NA	NA|406aa|up_5|NZ_CP012018.1_2111353_2112571_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_CP012018.1_2112686_2113316_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_CP012018.1_2113305_2114349_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_CP012018.1_2114345_2115047_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP012018.1_2115061_2115448_-	NA	NA|253aa|up_0|NZ_CP012018.1_2115664_2116423_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP012018.1_2116894_2117881_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP012018.1_2118311_2118725_-	NA	NA|37aa|down_2|NZ_CP012018.1_2118753_2118864_-	NA	NA|244aa|down_3|NZ_CP012018.1_2118949_2119681_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP012018.1_2119682_2120996_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP012018.1_2121287_2121788_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP012018.1_2121869_2121962_-	NA	DEDDh|185aa|down_7|NZ_CP012018.1_2122176_2122731_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP012018.1_2122798_2123869_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP012018.1_2124115_2124646_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_001515705.1_ASM151570v1	NZ_CP012018	Staphylococcus aureus subsp. aureus strain Gv88 chromosome, complete genome	9	2356780-2356930	9	CRISPRCasFinder	no	csa3	csa3,WYL,cas3,DEDDh,DinG	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|77aa|up_5|NZ_CP012018.1_2351651_2351882_-,NA|364aa|up_0|NZ_CP012018.1_2355670_2356762_+,NA|35aa|down_0|NZ_CP012018.1_2357261_2357366_-,NA|31aa|down_2|NZ_CP012018.1_2359477_2359570_+	NA|237aa|up_9|NZ_CP012018.1_2347261_2347972_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP012018.1_2348092_2348536_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP012018.1_2348735_2349149_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP012018.1_2349606_2350980_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP012018.1_2351651_2351882_-	NA	NA|313aa|up_4|NZ_CP012018.1_2351912_2352851_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP012018.1_2353285_2353951_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP012018.1_2354102_2354423_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP012018.1_2354424_2355405_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP012018.1_2355670_2356762_+	NA	NA|35aa|down_0|NZ_CP012018.1_2357261_2357366_-	NA	NA|379aa|down_1|NZ_CP012018.1_2358052_2359189_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP012018.1_2359477_2359570_+	NA	NA|286aa|down_3|NZ_CP012018.1_2360274_2361132_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP012018.1_2361199_2361982_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP012018.1_2362213_2364019_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP012018.1_2364699_2366238_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP012018.1_2366272_2368405_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP012018.1_2368416_2368851_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP012018.1_2368850_2369957_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_001515705.1_ASM151570v1	NZ_CP012018	Staphylococcus aureus subsp. aureus strain Gv88 chromosome, complete genome	10	2482272-2482465	1	CRT	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	13	2482295-2482327|2482295-2482327|2482295-2482327|2482295-2482327|2482351-2482386|2482351-2482386|2482351-2482386|2482351-2482386|2482351-2482386|2482410-2482442|2482410-2482442|2482410-2482442|2482410-2482442	NZ_CP012018.1_1245021-1244989|NZ_CP012018.1_1455813-1455781|NZ_CP012018.1_1548459-1548491|NZ_CP012018.1_2759051-2759083|NZ_CP012018.1_1244968-1244933|NZ_CP012018.1_1959440-1959405|NZ_CP012018.1_312006-311971|NZ_CP012018.1_1773405-1773440|NZ_CP012018.1_2127317-2127352|NZ_CP012018.1_876109-876141|NZ_CP012018.1_1245021-1244989|NZ_CP012018.1_1455813-1455781|NZ_CP012018.1_2759051-2759083	NA	3	3	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|55aa|up_9|NZ_CP012018.1_2472799_2472964_+,NA|106aa|up_8|NZ_CP012018.1_2473208_2473526_+,NA|84aa|up_5|NZ_CP012018.1_2478650_2478902_+,NA|57aa|up_0|NZ_CP012018.1_2482041_2482212_+,NA	NA|55aa|up_9|NZ_CP012018.1_2472799_2472964_+	NA	NA|106aa|up_8|NZ_CP012018.1_2473208_2473526_+	NA	NA|1056aa|up_7|NZ_CP012018.1_2473712_2476880_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP012018.1_2476996_2478262_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP012018.1_2478650_2478902_+	NA	NA|255aa|up_4|NZ_CP012018.1_2478893_2479658_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP012018.1_2479819_2480260_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP012018.1_2480252_2481464_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP012018.1_2481565_2481916_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP012018.1_2482041_2482212_+	NA	NA|341aa|down_0|NZ_CP012018.1_2482606_2483629_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP012018.1_2483648_2484248_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP012018.1_2484254_2484488_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP012018.1_2484493_2484940_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP012018.1_2484953_2485439_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP012018.1_2485435_2486695_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP012018.1_2486757_2487252_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP012018.1_2487253_2487760_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP012018.1_2487790_2488795_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP012018.1_2488965_2489571_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_001515705.1_ASM151570v1	NZ_CP012018	Staphylococcus aureus subsp. aureus strain Gv88 chromosome, complete genome	11	2981817-2981900	10	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	TTTCGAAATTCTCTGTGTTGGGACCC	26	1	3	2981843-2981874|2981843-2981874|2981843-2981874	NZ_CP012018.1_876209-876240|NZ_CP012018.1_1127005-1127036|NZ_CP012018.1_1548503-1548534	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|64aa|up_7|NZ_CP012018.1_2975768_2975960_+,NA|166aa|up_6|NZ_CP012018.1_2977046_2977544_-,NA	NA|253aa|up_9|NZ_CP012018.1_2973048_2973807_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|627aa|up_8|NZ_CP012018.1_2973796_2975677_+	pfam02687, FtsX, FtsX-like permease family	NA|64aa|up_7|NZ_CP012018.1_2975768_2975960_+	NA	NA|166aa|up_6|NZ_CP012018.1_2977046_2977544_-	NA	NA|250aa|up_5|NZ_CP012018.1_2977545_2978295_-	pfam15526, Ntox21, Novel toxin 21	NA|268aa|up_4|NZ_CP012018.1_2978313_2979117_-	cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins	NA|67aa|up_3|NZ_CP012018.1_2979600_2979801_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|190aa|up_2|NZ_CP012018.1_2979927_2980497_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|132aa|up_1|NZ_CP012018.1_2980749_2981145_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|118aa|up_0|NZ_CP012018.1_2981212_2981566_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|280aa|down_0|NZ_CP012018.1_2982118_2982958_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|240aa|down_1|NZ_CP012018.1_2983000_2983720_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|626aa|down_2|NZ_CP012018.1_2983719_2985597_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|460aa|down_3|NZ_CP012018.1_2985663_2987043_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|118aa|down_4|NZ_CP012018.1_2987186_2987540_-	PRK00499, rnpA, ribonuclease P; Reviewed	NA|46aa|down_5|NZ_CP012018.1_2987659_2987797_-	pfam00468, Ribosomal_L34, Ribosomal protein L34	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
