assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001515765.1_ASM151576v1	NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	1	444068-444168	1	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|70aa|up_8|NZ_CP012012.1_435640_435850_-,NA|128aa|up_6|NZ_CP012012.1_436674_437058_-,NA|34aa|up_0|NZ_CP012012.1_443292_443394_+,NA|221aa|down_1|NZ_CP012012.1_445258_445921_-	NA|84aa|up_9|NZ_CP012012.1_435350_435602_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_CP012012.1_435640_435850_-	NA	NA|194aa|up_7|NZ_CP012012.1_436027_436609_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_CP012012.1_436674_437058_-	NA	NA|209aa|up_5|NZ_CP012012.1_437312_437939_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_CP012012.1_438383_439907_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP012012.1_439922_440492_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP012012.1_440983_441739_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP012012.1_441819_443208_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NZ_CP012012.1_443292_443394_+	NA	NA|319aa|down_0|NZ_CP012012.1_444184_445141_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP012012.1_445258_445921_-	NA	NA|136aa|down_2|NZ_CP012012.1_446063_446471_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP012012.1_446983_447562_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP012012.1_447561_448830_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP012012.1_448867_450334_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP012012.1_450358_451900_+	PRK00074, guaA, GMP synthase; Reviewed	NA|398aa|down_7|NZ_CP012012.1_451967_453161_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|67aa|down_8|NZ_CP012012.1_453187_453388_-	pfam11372, DUF3173, Domain of unknown function (DUF3173)	NA|77aa|down_9|NZ_CP012012.1_453885_454116_-	pfam12645, HTH_16, Helix-turn-helix domain
GCF_001515765.1_ASM151576v1	NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	2	709730-709822	2	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|36aa|up_3|NZ_CP012012.1_706213_706321_+,NA|169aa|down_4|NZ_CP012012.1_713569_714076_+,NA|239aa|down_5|NZ_CP012012.1_714237_714954_+	NA|313aa|up_9|NZ_CP012012.1_700415_701354_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP012012.1_701564_702101_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP012012.1_702269_702746_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP012012.1_702785_704081_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP012012.1_704108_704630_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP012012.1_705128_706139_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP012012.1_706213_706321_+	NA	NA|139aa|up_2|NZ_CP012012.1_706413_706830_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP012012.1_706826_708488_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP012012.1_708876_709512_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|NZ_CP012012.1_709890_710778_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP012012.1_710925_711876_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP012012.1_711930_712650_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP012012.1_712633_713434_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP012012.1_713569_714076_+	NA	NA|239aa|down_5|NZ_CP012012.1_714237_714954_+	NA	NA|263aa|down_6|NZ_CP012012.1_715122_715911_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP012012.1_716161_716536_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_CP012012.1_717480_718410_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_CP012012.1_718604_718829_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_001515765.1_ASM151576v1	NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	3	870918-870998	3	CRISPRCasFinder	no	cas3	csa3,WYL,cas3,DEDDh,DinG	Unclear	TTCTTTATGTTGGGGCCCCGCCAACT	26	1	10	870944-870972|870944-870972|870944-870972|870944-870972|870944-870972|870944-870972|870944-870972|870944-870972|870944-870972|870944-870972	NZ_CP012012.1_390488-390460|NZ_CP012012.1_390543-390515|NZ_CP012012.1_1954209-1954181|NZ_CP012012.1_312218-312190|NZ_CP012012.1_922091-922119|NZ_CP012012.1_1004778-1004806|NZ_CP012012.1_1247825-1247797|NZ_CP012012.1_1768274-1768302|NZ_CP012012.1_2123654-2123682|NZ_CP012012.1_2667039-2667011	NA	1	1	Unclear	csa3,WYL,cas3,DEDDh,DinG	NA|35aa|up_7|NZ_CP012012.1_861831_861936_+,NA|36aa|up_5|NZ_CP012012.1_863368_863476_+,NA	NA|191aa|up_9|NZ_CP012012.1_858272_858845_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP012012.1_859258_861790_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP012012.1_861831_861936_+	NA	NA|370aa|up_6|NZ_CP012012.1_862104_863215_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP012012.1_863368_863476_+	NA	NA|280aa|up_4|NZ_CP012012.1_863623_864463_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP012012.1_864636_865287_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP012012.1_865283_865520_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP012012.1_865788_867774_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP012012.1_867781_870628_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP012012.1_871234_872167_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP012012.1_872172_873012_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP012012.1_873019_873505_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP012012.1_873512_874952_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP012012.1_875018_875954_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP012012.1_876719_877631_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP012012.1_877627_878623_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP012012.1_878732_879677_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP012012.1_880249_880837_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP012012.1_881079_881982_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_001515765.1_ASM151576v1	NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	4	922025-922106	4	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	922049-922082|922049-922082	NZ_CP012012.1_1449383-1449350|NZ_CP012012.1_1541943-1541976	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA,NA	NA|194aa|up_9|NZ_CP012012.1_915128_915710_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP012012.1_915782_916400_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP012012.1_916554_917049_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP012012.1_917447_917870_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP012012.1_918017_918734_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP012012.1_918816_919356_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP012012.1_919505_919826_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP012012.1_919969_920326_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP012012.1_920483_920864_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP012012.1_921042_921921_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP012012.1_922662_923049_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP012012.1_923041_923338_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP012012.1_923587_924613_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP012012.1_924605_925301_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP012012.1_925318_926140_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NZ_CP012012.1_926283_927504_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|463aa|down_6|NZ_CP012012.1_927517_928906_-	pfam02037, SAP, SAP domain	NA|191aa|down_7|NZ_CP012012.1_928932_929505_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|74aa|down_8|NZ_CP012012.1_929676_929898_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|91aa|down_9|NZ_CP012012.1_929898_930171_+	pfam13545, HTH_Crp_2, Crp-like helix-turn-helix domain
GCF_001515765.1_ASM151576v1	NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	5	1118540-1118627	5	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA,NA|45aa|down_0|NZ_CP012012.1_1118636_1118771_-,NA|432aa|down_1|NZ_CP012012.1_1118922_1120218_+	NA|224aa|up_9|NZ_CP012012.1_1106330_1107002_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_8|NZ_CP012012.1_1106994_1109184_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_7|NZ_CP012012.1_1109162_1110647_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_6|NZ_CP012012.1_1110639_1111668_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|NZ_CP012012.1_1111670_1112237_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|NZ_CP012012.1_1112251_1113730_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|NZ_CP012012.1_1113751_1114999_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_2|NZ_CP012012.1_1115263_1116070_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_1|NZ_CP012012.1_1116062_1117463_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|NZ_CP012012.1_1117477_1118053_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|NZ_CP012012.1_1118636_1118771_-	NA	NA|432aa|down_1|NZ_CP012012.1_1118922_1120218_+	NA	NA|391aa|down_2|NZ_CP012012.1_1120642_1121815_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NZ_CP012012.1_1121868_1122411_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NZ_CP012012.1_1122564_1122831_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NZ_CP012012.1_1122833_1124552_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NZ_CP012012.1_1124788_1125022_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NZ_CP012012.1_1125219_1126581_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NZ_CP012012.1_1126577_1127597_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NZ_CP012012.1_1127729_1128392_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_001515765.1_ASM151576v1	NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	6	1247859-1247944	6	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	5	1247889-1247914|1247889-1247914|1247889-1247914|1247889-1247914|1247889-1247914	NZ_CP012012.1_312058-312083|NZ_CP012012.1_839394-839419|NZ_CP012012.1_876371-876346|NZ_CP012012.1_839338-839363|NZ_CP012012.1_839450-839475	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|169aa|up_8|NZ_CP012012.1_1240222_1240729_+,NA|62aa|up_5|NZ_CP012012.1_1242810_1242996_-,NA|78aa|up_3|NZ_CP012012.1_1244949_1245183_-,NA|49aa|up_1|NZ_CP012012.1_1247291_1247438_+,NA|75aa|up_0|NZ_CP012012.1_1247394_1247619_+,NA|76aa|down_6|NZ_CP012012.1_1254918_1255146_+	NA|134aa|up_9|NZ_CP012012.1_1239149_1239551_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_8|NZ_CP012012.1_1240222_1240729_+	NA	NA|166aa|up_7|NZ_CP012012.1_1240987_1241485_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_6|NZ_CP012012.1_1241638_1241989_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_5|NZ_CP012012.1_1242810_1242996_-	NA	NA|391aa|up_4|NZ_CP012012.1_1243377_1244550_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|78aa|up_3|NZ_CP012012.1_1244949_1245183_-	NA	NA|320aa|up_2|NZ_CP012012.1_1245659_1246619_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|up_1|NZ_CP012012.1_1247291_1247438_+	NA	NA|75aa|up_0|NZ_CP012012.1_1247394_1247619_+	NA	NA|239aa|down_0|NZ_CP012012.1_1248119_1248836_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|NZ_CP012012.1_1248943_1249669_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_2|NZ_CP012012.1_1249763_1250489_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_3|NZ_CP012012.1_1250926_1251928_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_4|NZ_CP012012.1_1251950_1252883_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|519aa|down_5|NZ_CP012012.1_1253054_1254611_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_6|NZ_CP012012.1_1254918_1255146_+	NA	NA|316aa|down_7|NZ_CP012012.1_1255450_1256398_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_8|NZ_CP012012.1_1256646_1256835_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_9|NZ_CP012012.1_1257745_1257880_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCF_001515765.1_ASM151576v1	NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	7	2112932-2113010	7	CRISPRCasFinder	no	DEDDh	csa3,WYL,cas3,DEDDh,DinG	Unclear	AATTTCTCTATGTTGGGGCCCCG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|92aa|up_5|NZ_CP012012.1_2107136_2107412_+,NA|129aa|up_1|NZ_CP012012.1_2111397_2111784_-,NA|138aa|down_1|NZ_CP012012.1_2114647_2115061_-,NA|37aa|down_2|NZ_CP012012.1_2115089_2115200_-,NA|31aa|down_6|NZ_CP012012.1_2118205_2118298_-	NA|177aa|up_9|NZ_CP012012.1_2104439_2104970_-	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]	NA|419aa|up_8|NZ_CP012012.1_2105059_2106316_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_7|NZ_CP012012.1_2106318_2106519_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_6|NZ_CP012012.1_2106665_2107130_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_5|NZ_CP012012.1_2107136_2107412_+	NA	NA|406aa|up_4|NZ_CP012012.1_2107689_2108907_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_3|NZ_CP012012.1_2109023_2109653_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|234aa|up_2|NZ_CP012012.1_2110681_2111383_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP012012.1_2111397_2111784_-	NA	NA|253aa|up_0|NZ_CP012012.1_2112000_2112759_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP012012.1_2113230_2114217_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP012012.1_2114647_2115061_-	NA	NA|37aa|down_2|NZ_CP012012.1_2115089_2115200_-	NA	NA|244aa|down_3|NZ_CP012012.1_2115285_2116017_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP012012.1_2116018_2117332_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP012012.1_2117623_2118124_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP012012.1_2118205_2118298_-	NA	DEDDh|185aa|down_7|NZ_CP012012.1_2118512_2119067_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP012012.1_2119134_2120205_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP012012.1_2120452_2120983_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_001515765.1_ASM151576v1	NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	8	2345508-2345658	8	CRISPRCasFinder	no	csa3	csa3,WYL,cas3,DEDDh,DinG	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|77aa|up_5|NZ_CP012012.1_2340379_2340610_-,NA|364aa|up_0|NZ_CP012012.1_2344398_2345490_+,NA|35aa|down_0|NZ_CP012012.1_2345989_2346094_-,NA|31aa|down_2|NZ_CP012012.1_2348205_2348298_+	NA|237aa|up_9|NZ_CP012012.1_2335989_2336700_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP012012.1_2336820_2337264_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP012012.1_2337463_2337877_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP012012.1_2338334_2339708_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP012012.1_2340379_2340610_-	NA	NA|313aa|up_4|NZ_CP012012.1_2340640_2341579_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP012012.1_2342013_2342679_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP012012.1_2342830_2343151_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP012012.1_2343152_2344133_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP012012.1_2344398_2345490_+	NA	NA|35aa|down_0|NZ_CP012012.1_2345989_2346094_-	NA	NA|379aa|down_1|NZ_CP012012.1_2346780_2347917_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP012012.1_2348205_2348298_+	NA	NA|286aa|down_3|NZ_CP012012.1_2349002_2349860_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP012012.1_2349927_2350710_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP012012.1_2350941_2352747_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP012012.1_2353426_2354965_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP012012.1_2354999_2357132_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP012012.1_2357143_2357578_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP012012.1_2357577_2358684_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_001515765.1_ASM151576v1	NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	9	2471011-2471204	1	CRT	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	13	2471034-2471066|2471034-2471066|2471034-2471066|2471034-2471066|2471090-2471125|2471090-2471125|2471090-2471125|2471090-2471125|2471090-2471125|2471149-2471181|2471149-2471181|2471149-2471181|2471149-2471181	NZ_CP012012.1_1247878-1247846|NZ_CP012012.1_1449337-1449305|NZ_CP012012.1_1541989-1542021|NZ_CP012012.1_2747408-2747440|NZ_CP012012.1_1247825-1247790|NZ_CP012012.1_1954209-1954174|NZ_CP012012.1_312218-312183|NZ_CP012012.1_1768274-1768309|NZ_CP012012.1_2123654-2123689|NZ_CP012012.1_876326-876358|NZ_CP012012.1_1247878-1247846|NZ_CP012012.1_1449337-1449305|NZ_CP012012.1_2747408-2747440	NA	3	3	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|55aa|up_9|NZ_CP012012.1_2461538_2461703_+,NA|106aa|up_8|NZ_CP012012.1_2461947_2462265_+,NA|84aa|up_5|NZ_CP012012.1_2467389_2467641_+,NA|57aa|up_0|NZ_CP012012.1_2470780_2470951_+,NA	NA|55aa|up_9|NZ_CP012012.1_2461538_2461703_+	NA	NA|106aa|up_8|NZ_CP012012.1_2461947_2462265_+	NA	NA|1056aa|up_7|NZ_CP012012.1_2462451_2465619_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP012012.1_2465735_2467001_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP012012.1_2467389_2467641_+	NA	NA|255aa|up_4|NZ_CP012012.1_2467632_2468397_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP012012.1_2468558_2468999_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP012012.1_2468991_2470203_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP012012.1_2470304_2470655_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP012012.1_2470780_2470951_+	NA	NA|341aa|down_0|NZ_CP012012.1_2471345_2472368_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP012012.1_2472387_2472987_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP012012.1_2472993_2473227_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP012012.1_2473232_2473679_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP012012.1_2473692_2474178_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP012012.1_2474174_2475434_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP012012.1_2475496_2475991_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP012012.1_2475992_2476499_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP012012.1_2476529_2477534_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP012012.1_2477703_2478309_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_001515765.1_ASM151576v1	NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	10	2970176-2970259	9	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	TTTCGAAATTCTCTGTGTTGGGACCC	26	1	3	2970202-2970233|2970202-2970233|2970202-2970233	NZ_CP012012.1_876426-876457|NZ_CP012012.1_1128500-1128531|NZ_CP012012.1_1542033-1542064	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|64aa|up_7|NZ_CP012012.1_2964127_2964319_+,NA|166aa|up_6|NZ_CP012012.1_2965405_2965903_-,NA	NA|253aa|up_9|NZ_CP012012.1_2961407_2962166_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|627aa|up_8|NZ_CP012012.1_2962155_2964036_+	pfam02687, FtsX, FtsX-like permease family	NA|64aa|up_7|NZ_CP012012.1_2964127_2964319_+	NA	NA|166aa|up_6|NZ_CP012012.1_2965405_2965903_-	NA	NA|250aa|up_5|NZ_CP012012.1_2965904_2966654_-	pfam15526, Ntox21, Novel toxin 21	NA|268aa|up_4|NZ_CP012012.1_2966672_2967476_-	cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins	NA|67aa|up_3|NZ_CP012012.1_2967959_2968160_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|190aa|up_2|NZ_CP012012.1_2968286_2968856_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|132aa|up_1|NZ_CP012012.1_2969108_2969504_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|118aa|up_0|NZ_CP012012.1_2969571_2969925_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|280aa|down_0|NZ_CP012012.1_2970477_2971317_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|240aa|down_1|NZ_CP012012.1_2971359_2972079_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|626aa|down_2|NZ_CP012012.1_2972078_2973956_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|460aa|down_3|NZ_CP012012.1_2974022_2975402_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|118aa|down_4|NZ_CP012012.1_2975545_2975899_-	PRK00499, rnpA, ribonuclease P; Reviewed	NA|46aa|down_5|NZ_CP012012.1_2976018_2976156_-	pfam00468, Ribosomal_L34, Ribosomal protein L34	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
