bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	3.1|870944|29|NZ_CP012012|CRISPRCasFinder	NZ_CP012012.1	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	96.55	29	1	0	1	29	390488	390460	444068-444168|709730-709822|870918-870998|922025-922106|1118540-1118627|1247859-1247944|2112932-2113010|2345508-2345658|2471011-2471204|2970176-2970259	5e-07	44.4	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	390460-390488	TTTCGAAAAGAAATTCTACAAGCAATGCA	1
NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	3.1|870944|29|NZ_CP012012|CRISPRCasFinder	NZ_CP012012.1	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	96.55	29	1	0	1	29	390543	390515	444068-444168|709730-709822|870918-870998|922025-922106|1118540-1118627|1247859-1247944|2112932-2113010|2345508-2345658|2471011-2471204|2970176-2970259	5e-07	44.4	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	390515-390543	TTTCGAAAAGAAATTCTACAAGCAATGCA	1
NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	3.1|870944|29|NZ_CP012012|CRISPRCasFinder	NZ_CP012012.1	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	96.55	29	1	0	1	29	1954209	1954181	444068-444168|709730-709822|870918-870998|922025-922106|1118540-1118627|1247859-1247944|2112932-2113010|2345508-2345658|2471011-2471204|2970176-2970259	5e-07	44.4	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	1954181-1954209	TTTCGAAAAGAAATTCTACAGACAATGCA	1
NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	3.1|870944|29|NZ_CP012012|CRISPRCasFinder	NZ_CP012012.1	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	93.10	29	2	0	1	29	312218	312190	444068-444168|709730-709822|870918-870998|922025-922106|1118540-1118627|1247859-1247944|2112932-2113010|2345508-2345658|2471011-2471204|2970176-2970259	5e-06	41.2	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	312190-312218	TTTCGAAAAGAAATTCTACAGGCAATGCA	2
NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	3.1|870944|29|NZ_CP012012|CRISPRCasFinder	NZ_CP012012.1	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	93.10	29	2	0	1	29	922091	922119	444068-444168|709730-709822|870918-870998|922025-922106|1118540-1118627|1247859-1247944|2112932-2113010|2345508-2345658|2471011-2471204|2970176-2970259	5e-06	41.2	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	922091-922119	TGCATTGCCTGTAGAATTTCTTTTCGAAA	2
NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	3.1|870944|29|NZ_CP012012|CRISPRCasFinder	NZ_CP012012.1	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	93.10	29	2	0	1	29	1004778	1004806	444068-444168|709730-709822|870918-870998|922025-922106|1118540-1118627|1247859-1247944|2112932-2113010|2345508-2345658|2471011-2471204|2970176-2970259	5e-06	41.2	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	1004778-1004806	TGCATTGCCTGTAGAATTTCTTTTCGAAA	2
NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	3.1|870944|29|NZ_CP012012|CRISPRCasFinder	NZ_CP012012.1	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	93.10	29	2	0	1	29	1247825	1247797	444068-444168|709730-709822|870918-870998|922025-922106|1118540-1118627|1247859-1247944|2112932-2113010|2345508-2345658|2471011-2471204|2970176-2970259	5e-06	41.2	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	1247797-1247825	TTTCAAAAAGAAATTCTACAGACAATGCA	2
NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	3.1|870944|29|NZ_CP012012|CRISPRCasFinder	NZ_CP012012.1	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	93.10	29	2	0	1	29	1768274	1768302	444068-444168|709730-709822|870918-870998|922025-922106|1118540-1118627|1247859-1247944|2112932-2113010|2345508-2345658|2471011-2471204|2970176-2970259	5e-06	41.2	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	1768274-1768302	TGCATTGCCTGTAGAATTTCTTTTCGAAA	2
NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	3.1|870944|29|NZ_CP012012|CRISPRCasFinder	NZ_CP012012.1	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	93.10	29	2	0	1	29	2123654	2123682	444068-444168|709730-709822|870918-870998|922025-922106|1118540-1118627|1247859-1247944|2112932-2113010|2345508-2345658|2471011-2471204|2970176-2970259	5e-06	41.2	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	2123654-2123682	TGCATTGTCTGTAGAATTTCCTTTCGAAA	2
NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	3.1|870944|29|NZ_CP012012|CRISPRCasFinder	NZ_CP012012.1	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	93.10	29	2	0	1	29	2667039	2667011	444068-444168|709730-709822|870918-870998|922025-922106|1118540-1118627|1247859-1247944|2112932-2113010|2345508-2345658|2471011-2471204|2970176-2970259	5e-06	41.2	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAA	2667011-2667039	TTTCGAAAAGAAATTCTACAGGCAATGCA	2
NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	4.1|922049|34|NZ_CP012012|CRISPRCasFinder	NZ_CP012012.1	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	100.00	34	0	0	1	34	1449383	1449350	444068-444168|709730-709822|870918-870998|922025-922106|1118540-1118627|1247859-1247944|2112932-2113010|2345508-2345658|2471011-2471204|2970176-2970259	5e-10	55.5	1.0	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	1449350-1449383	ATGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	0
NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	4.1|922049|34|NZ_CP012012|CRISPRCasFinder	NZ_CP012012.1	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	100.00	34	0	0	1	34	1541943	1541976	444068-444168|709730-709822|870918-870998|922025-922106|1118540-1118627|1247859-1247944|2112932-2113010|2345508-2345658|2471011-2471204|2970176-2970259	5e-10	55.5	1.0	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	1541943-1541976	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	0
NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	6.1|1247889|26|NZ_CP012012|CRISPRCasFinder	NZ_CP012012.1	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	96.15	26	1	0	1	26	312058	312083	444068-444168|709730-709822|870918-870998|922025-922106|1118540-1118627|1247859-1247944|2112932-2113010|2345508-2345658|2471011-2471204|2970176-2970259	1e-05	39.6	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	312058-312083	CGGGCCCCCAACATAGAAGCTGGCGG	1
NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	6.1|1247889|26|NZ_CP012012|CRISPRCasFinder	NZ_CP012012.1	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	96.15	26	1	0	1	26	839394	839419	444068-444168|709730-709822|870918-870998|922025-922106|1118540-1118627|1247859-1247944|2112932-2113010|2345508-2345658|2471011-2471204|2970176-2970259	1e-05	39.6	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	839394-839419	CGGGGCCCCAACATAGAAGCAGGCGG	1
NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	6.1|1247889|26|NZ_CP012012|CRISPRCasFinder	NZ_CP012012.1	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	96.15	26	1	0	1	26	876371	876346	444068-444168|709730-709822|870918-870998|922025-922106|1118540-1118627|1247859-1247944|2112932-2113010|2345508-2345658|2471011-2471204|2970176-2970259	1e-05	39.6	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	876346-876371	CCGCCAGCTTCTGTGTTGGGGCCCCG	1
NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	6.1|1247889|26|NZ_CP012012|CRISPRCasFinder	NZ_CP012012.1	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	92.31	26	2	0	1	26	839338	839363	444068-444168|709730-709822|870918-870998|922025-922106|1118540-1118627|1247859-1247944|2112932-2113010|2345508-2345658|2471011-2471204|2970176-2970259	1e-04	36.5	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	839338-839363	CGGGGCCCCAACACAGAAGCAGGCGG	2
NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	6.1|1247889|26|NZ_CP012012|CRISPRCasFinder	NZ_CP012012.1	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	92.31	26	2	0	1	26	839450	839475	444068-444168|709730-709822|870918-870998|922025-922106|1118540-1118627|1247859-1247944|2112932-2113010|2345508-2345658|2471011-2471204|2970176-2970259	1e-04	36.5	1.0	CGGGGCCCCAACATAGAAGCTGGCGG	839450-839475	CGGGGCCCCAACATAAAAGCAGGCGG	2
NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	9.1|2471034|33|NZ_CP012012|CRT	NZ_CP012012.1	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	93.94	33	2	0	1	33	1247878	1247846	444068-444168|709730-709822|870918-870998|922025-922106|1118540-1118627|1247859-1247944|2112932-2113010|2345508-2345658|2471011-2471204|2970176-2970259	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1247846-1247878	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	9.1|2471034|33|NZ_CP012012|CRT	NZ_CP012012.1	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	93.94	33	2	0	1	33	1449337	1449305	444068-444168|709730-709822|870918-870998|922025-922106|1118540-1118627|1247859-1247944|2112932-2113010|2345508-2345658|2471011-2471204|2970176-2970259	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1449305-1449337	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	9.1|2471034|33|NZ_CP012012|CRT	NZ_CP012012.1	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	93.94	33	2	0	1	33	1541989	1542021	444068-444168|709730-709822|870918-870998|922025-922106|1118540-1118627|1247859-1247944|2112932-2113010|2345508-2345658|2471011-2471204|2970176-2970259	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1541989-1542021	CATTATTGTAAGCTGACTTTTCGTCATCTTCTG	2
NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	9.1|2471034|33|NZ_CP012012|CRT	NZ_CP012012.1	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	93.94	33	2	0	1	33	2747408	2747440	444068-444168|709730-709822|870918-870998|922025-922106|1118540-1118627|1247859-1247944|2112932-2113010|2345508-2345658|2471011-2471204|2970176-2970259	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	2747408-2747440	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	9.2|2471090|36|NZ_CP012012|CRT	NZ_CP012012.1	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	100.00	36	0	0	1	36	1247825	1247790	444068-444168|709730-709822|870918-870998|922025-922106|1118540-1118627|1247859-1247944|2112932-2113010|2345508-2345658|2471011-2471204|2970176-2970259	6e-11	58.6	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1247790-1247825	TAGAGAATTTCAAAAAGAAATTCTACAGACAATGCA	0
NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	9.2|2471090|36|NZ_CP012012|CRT	NZ_CP012012.1	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	97.22	36	1	0	1	36	1954209	1954174	444068-444168|709730-709822|870918-870998|922025-922106|1118540-1118627|1247859-1247944|2112932-2113010|2345508-2345658|2471011-2471204|2970176-2970259	5e-10	55.5	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1954174-1954209	TAGAGAATTTCGAAAAGAAATTCTACAGACAATGCA	1
NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	9.2|2471090|36|NZ_CP012012|CRT	NZ_CP012012.1	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	94.44	36	2	0	1	36	312218	312183	444068-444168|709730-709822|870918-870998|922025-922106|1118540-1118627|1247859-1247944|2112932-2113010|2345508-2345658|2471011-2471204|2970176-2970259	5e-09	52.3	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	312183-312218	TAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCA	2
NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	9.2|2471090|36|NZ_CP012012|CRT	NZ_CP012012.1	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	94.44	36	2	0	1	36	1768274	1768309	444068-444168|709730-709822|870918-870998|922025-922106|1118540-1118627|1247859-1247944|2112932-2113010|2345508-2345658|2471011-2471204|2970176-2970259	5e-09	52.3	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1768274-1768309	TGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTA	2
NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	9.2|2471090|36|NZ_CP012012|CRT	NZ_CP012012.1	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	94.44	36	2	0	1	36	2123654	2123689	444068-444168|709730-709822|870918-870998|922025-922106|1118540-1118627|1247859-1247944|2112932-2113010|2345508-2345658|2471011-2471204|2970176-2970259	5e-09	52.3	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	2123654-2123689	TGCATTGTCTGTAGAATTTCCTTTCGAAATTCTCTA	2
NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	9.3|2471149|33|NZ_CP012012|CRT	NZ_CP012012.1	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	93.94	33	2	0	1	33	876326	876358	444068-444168|709730-709822|870918-870998|922025-922106|1118540-1118627|1247859-1247944|2112932-2113010|2345508-2345658|2471011-2471204|2970176-2970259	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	876326-876358	CATTATTGTAAGCTGACTTTCCGCCAGCTTCTG	2
NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	9.3|2471149|33|NZ_CP012012|CRT	NZ_CP012012.1	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	93.94	33	2	0	1	33	1247878	1247846	444068-444168|709730-709822|870918-870998|922025-922106|1118540-1118627|1247859-1247944|2112932-2113010|2345508-2345658|2471011-2471204|2970176-2970259	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	1247846-1247878	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	9.3|2471149|33|NZ_CP012012|CRT	NZ_CP012012.1	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	93.94	33	2	0	1	33	1449337	1449305	444068-444168|709730-709822|870918-870998|922025-922106|1118540-1118627|1247859-1247944|2112932-2113010|2345508-2345658|2471011-2471204|2970176-2970259	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	1449305-1449337	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	9.3|2471149|33|NZ_CP012012|CRT	NZ_CP012012.1	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	93.94	33	2	0	1	33	2747408	2747440	444068-444168|709730-709822|870918-870998|922025-922106|1118540-1118627|1247859-1247944|2112932-2113010|2345508-2345658|2471011-2471204|2970176-2970259	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	2747408-2747440	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	10.1|2970202|32|NZ_CP012012|CRISPRCasFinder	NZ_CP012012.1	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	96.88	32	1	0	1	32	876426	876457	444068-444168|709730-709822|870918-870998|922025-922106|1118540-1118627|1247859-1247944|2112932-2113010|2345508-2345658|2471011-2471204|2970176-2970259	3e-08	49.1	1.0	ACACCCTAACTCGCATTGCCTGTAGAATTTCT	876426-876457	ACACCCCAACTCGCATTGCCTGTAGAATTTCT	1
NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	10.1|2970202|32|NZ_CP012012|CRISPRCasFinder	NZ_CP012012.1	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	96.88	32	1	0	1	32	1128500	1128531	444068-444168|709730-709822|870918-870998|922025-922106|1118540-1118627|1247859-1247944|2112932-2113010|2345508-2345658|2471011-2471204|2970176-2970259	3e-08	49.1	1.0	ACACCCTAACTCGCATTGCCTGTAGAATTTCT	1128500-1128531	ACACCCCAACTCGCATTGCCTGTAGAATTTCT	1
NZ_CP012012	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	10.1|2970202|32|NZ_CP012012|CRISPRCasFinder	NZ_CP012012.1	Staphylococcus aureus subsp. aureus strain HC1335 chromosome, complete genome	96.88	32	1	0	1	32	1542033	1542064	444068-444168|709730-709822|870918-870998|922025-922106|1118540-1118627|1247859-1247944|2112932-2113010|2345508-2345658|2471011-2471204|2970176-2970259	3e-08	49.1	1.0	ACACCCTAACTCGCATTGCCTGTAGAATTTCT	1542033-1542064	ACACCCCAACTCGCATTGCCTGTAGAATTTCT	1
