assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001530015.1_ASM153001v1	NZ_CP014008	Klebsiella pneumoniae subsp. pneumoniae strain RJF293 chromosome, complete genome	1	1604864-1604941	1	CRISPRCasFinder	no		DEDDh,WYL,cas3,DinG,csa3,cas2,cas1,cas7,cas6e,cse2gr11,cas8e	Orphan	AAGGCGTCAGCCGCCACCCGGCA	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,DinG,csa3,cas2,cas1,cas7,cas6e,cse2gr11,cas8e	NA,NA|71aa|down_7|NZ_CP014008.1_1611542_1611755_-	NA|362aa|up_9|NZ_CP014008.1_1589918_1591004_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|144aa|up_8|NZ_CP014008.1_1591537_1591969_+	PRK15456, PRK15456, universal stress protein UspG; Provisional	NA|896aa|up_7|NZ_CP014008.1_1592020_1594708_+	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp	NA|428aa|up_6|NZ_CP014008.1_1594981_1596265_-	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|440aa|up_5|NZ_CP014008.1_1596419_1597739_+	PRK09356, PRK09356, imidazolonepropionase; Validated	NA|319aa|up_4|NZ_CP014008.1_1597735_1598692_+	PRK01722, PRK01722, formimidoylglutamase; Provisional	NA|242aa|up_3|NZ_CP014008.1_1598753_1599479_+	PRK14999, PRK14999, histidine utilization repressor; Provisional	NA|313aa|up_2|NZ_CP014008.1_1600371_1601310_+	PRK05414, PRK05414, urocanate hydratase; Provisional	NA|509aa|up_1|NZ_CP014008.1_1601306_1602833_+	PRK09367, PRK09367, histidine ammonia-lyase; Provisional	NA|461aa|up_0|NZ_CP014008.1_1602931_1604314_+	PRK10580, proY, putative proline-specific permease; Provisional	NA|159aa|down_0|NZ_CP014008.1_1605093_1605570_-	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|430aa|down_1|NZ_CP014008.1_1605640_1606930_-	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|347aa|down_2|NZ_CP014008.1_1607143_1608184_+	PRK15108, PRK15108, biotin synthase; Provisional	NA|386aa|down_3|NZ_CP014008.1_1608180_1609338_+	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|252aa|down_4|NZ_CP014008.1_1609321_1610077_+	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|241aa|down_5|NZ_CP014008.1_1610069_1610792_+	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|241aa|down_6|NZ_CP014008.1_1610733_1611456_-	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|71aa|down_7|NZ_CP014008.1_1611542_1611755_-	NA	NA|674aa|down_8|NZ_CP014008.1_1612166_1614188_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|366aa|down_9|NZ_CP014008.1_1614436_1615534_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB
GCF_001530015.1_ASM153001v1	NZ_CP014008	Klebsiella pneumoniae subsp. pneumoniae strain RJF293 chromosome, complete genome	2	2991230-2991753	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas7,cas6e,cse2gr11,cas8e,cas3	DEDDh,WYL,cas3,DinG,csa3,cas2,cas1,cas7,cas6e,cse2gr11,cas8e	Type I-E	GAAACACCCCCACGTGCGTGGGGAAGAC,GAAACACCCCCACGTGCGTGGGGAAGACN,GAAACACCCCCACGTGCGTGGGGAAGAC	28,29,28	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	8,8,7	8	TypeI-E	DEDDh,WYL,cas3,DinG,csa3,cas2,cas1,cas7,cas6e,cse2gr11,cas8e	NA|372aa|up_0|NZ_CP014008.1_2989877_2990993_-,NA	NA|77aa|up_9|NZ_CP014008.1_2981979_2982210_-	COG3114, CcmD, Heme exporter protein D [Intracellular trafficking and secretion]	NA|246aa|up_8|NZ_CP014008.1_2982206_2982944_-	TIGR01191, Heme_exporter_protein_C, heme exporter protein CcmC	NA|220aa|up_7|NZ_CP014008.1_2982993_2983653_-	TIGR01190, Heme_exporter_protein_B, heme exporter protein CcmB	NA|208aa|up_6|NZ_CP014008.1_2983649_2984273_-	PRK13538, PRK13538, cytochrome c biogenesis heme-transporting ATPase CcmA	NA|447aa|up_5|NZ_CP014008.1_2984356_2985697_-	pfam00034, Cytochrom_C, Cytochrome c	NA|595aa|up_4|NZ_CP014008.1_2985707_2987492_-	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|252aa|up_3|NZ_CP014008.1_2987494_2988250_-	pfam13618, Gluconate_2-dh3, Gluconate 2-dehydrogenase subunit 3	NA|124aa|up_2|NZ_CP014008.1_2988751_2989123_+	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|228aa|up_1|NZ_CP014008.1_2989183_2989867_-	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|372aa|up_0|NZ_CP014008.1_2989877_2990993_-	NA	cas2|96aa|down_0|NZ_CP014008.1_2991800_2992088_-	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	cas1|292aa|down_1|NZ_CP014008.1_2992065_2992941_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	NA|323aa|down_2|NZ_CP014008.1_2993233_2994202_-	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	cas7|345aa|down_3|NZ_CP014008.1_2994733_2995768_-	pfam09344, Cas_CT1975, CT1975-like protein	cas6e|216aa|down_4|NZ_CP014008.1_2995797_2996445_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cse2gr11|189aa|down_5|NZ_CP014008.1_2996437_2997004_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|508aa|down_6|NZ_CP014008.1_2997015_2998539_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|872aa|down_7|NZ_CP014008.1_2998542_3001158_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|357aa|down_8|NZ_CP014008.1_3002155_3003226_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|590aa|down_9|NZ_CP014008.1_3003218_3004988_-	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]
GCF_001530015.1_ASM153001v1	NZ_CP014008	Klebsiella pneumoniae subsp. pneumoniae strain RJF293 chromosome, complete genome	3	3001570-3001903	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas7,cas6e,cse2gr11,cas8e,cas3	DEDDh,WYL,cas3,DinG,csa3,cas2,cas1,cas7,cas6e,cse2gr11,cas8e	Type I-E	AGAAACACCCCCACGCATGTGGGGAAGAC,GAAACACCCCCACGCATGTGGGGAAGAC,GAAACACCCCCACGCATGTGGGGAAGAC	29,28,28	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	5,5,5	5	TypeI-E	DEDDh,WYL,cas3,DinG,csa3,cas2,cas1,cas7,cas6e,cse2gr11,cas8e	NA|372aa|up_8|NZ_CP014008.1_2989877_2990993_-,NA	NA|228aa|up_9|NZ_CP014008.1_2989183_2989867_-	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|372aa|up_8|NZ_CP014008.1_2989877_2990993_-	NA	cas2|96aa|up_7|NZ_CP014008.1_2991800_2992088_-	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	cas1|292aa|up_6|NZ_CP014008.1_2992065_2992941_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	NA|323aa|up_5|NZ_CP014008.1_2993233_2994202_-	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	cas7|345aa|up_4|NZ_CP014008.1_2994733_2995768_-	pfam09344, Cas_CT1975, CT1975-like protein	cas6e|216aa|up_3|NZ_CP014008.1_2995797_2996445_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cse2gr11|189aa|up_2|NZ_CP014008.1_2996437_2997004_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|508aa|up_1|NZ_CP014008.1_2997015_2998539_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|872aa|up_0|NZ_CP014008.1_2998542_3001158_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|357aa|down_0|NZ_CP014008.1_3002155_3003226_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|590aa|down_1|NZ_CP014008.1_3003218_3004988_-	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|363aa|down_2|NZ_CP014008.1_3005061_3006150_-	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|360aa|down_3|NZ_CP014008.1_3006452_3007532_+	PRK10098, PRK10098, putative dehydrogenase; Provisional	NA|717aa|down_4|NZ_CP014008.1_3007779_3009930_+	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type	NA|54aa|down_5|NZ_CP014008.1_3009972_3010134_-	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|400aa|down_6|NZ_CP014008.1_3011425_3012625_+	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|145aa|down_7|NZ_CP014008.1_3012741_3013176_+	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|411aa|down_8|NZ_CP014008.1_3013741_3014974_+	PRK15403, PRK15403, multidrug efflux MFS transporter MdtM	NA|131aa|down_9|NZ_CP014008.1_3015010_3015403_+	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family
