assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001545155.1_ASM154515v1	NZ_CP014226	Halomonas chromatireducens strain AGD 8-3 chromosome, complete genome	1	1352551-1352692	1	CRISPRCasFinder	no		csx1,DEDDh,WYL,DinG,csa3,cas14j,cas3,RT	Orphan	AGTCCCGATAGCGCCGCGTCAGGTCGCCATAGGCGTCGATACGGCGGTCGC	51	0	0	NA	NA	NA	1	1	Orphan	csx1,DEDDh,WYL,DinG,csa3,cas14j,cas3,RT	NA|88aa|up_8|NZ_CP014226.1_1336716_1336980_+,NA	NA|205aa|up_9|NZ_CP014226.1_1335910_1336525_+	pfam03734, YkuD, L,D-transpeptidase catalytic domain	NA|88aa|up_8|NZ_CP014226.1_1336716_1336980_+	NA	NA|359aa|up_7|NZ_CP014226.1_1337089_1338166_-	PRK10190, PRK10190, L,D-transpeptidase; Provisional	NA|218aa|up_6|NZ_CP014226.1_1340796_1341450_+	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit	NA|360aa|up_5|NZ_CP014226.1_1341715_1342795_+	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional	NA|371aa|up_4|NZ_CP014226.1_1343109_1344222_+	PRK06598, PRK06598, aspartate-semialdehyde dehydrogenase; Reviewed	NA|908aa|up_3|NZ_CP014226.1_1344446_1347170_+	COG3170, FimV, Tfp pilus assembly protein FimV [Cell motility and secretion / Intracellular trafficking and secretion]	NA|322aa|up_2|NZ_CP014226.1_1347177_1348143_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|644aa|up_1|NZ_CP014226.1_1348335_1350267_+	cd00712, AsnB, Glutamine amidotransferases class-II (GATase) asparagine synthase_B type	NA|316aa|up_0|NZ_CP014226.1_1351448_1352396_+	PRK08999, PRK08999, Nudix family hydrolase	NA|348aa|down_0|NZ_CP014226.1_1353769_1354813_-	pfam04371, PAD_porph, Porphyromonas-type peptidyl-arginine deiminase	NA|414aa|down_1|NZ_CP014226.1_1354981_1356223_+	TIGR02212, releasing_system_transmembrane_protein_lolC	NA|249aa|down_2|NZ_CP014226.1_1356215_1356962_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|180aa|down_3|NZ_CP014226.1_1356992_1357532_-	pfam09835, DUF2062, Uncharacterized protein conserved in bacteria (DUF2062)	NA|143aa|down_4|NZ_CP014226.1_1360713_1361142_+	pfam02472, ExbD, Biopolymer transport protein ExbD/TolR	NA|586aa|down_5|NZ_CP014226.1_1361138_1362896_+	TIGR02203, Lipid_A_export_ATP-binding/permease_protein_msbA	NA|367aa|down_6|NZ_CP014226.1_1364449_1365550_+	TIGR04352, hypothetical_protein_imdm_1353, HprK-related kinase A	NA|222aa|down_7|NZ_CP014226.1_1365553_1366219_+	PRK01222, PRK01222, phosphoribosylanthranilate isomerase	NA|405aa|down_8|NZ_CP014226.1_1366282_1367497_+	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|344aa|down_9|NZ_CP014226.1_1368576_1369608_+	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta
GCF_001545155.1_ASM154515v1	NZ_CP014226	Halomonas chromatireducens strain AGD 8-3 chromosome, complete genome	2	2166087-2166210	2	CRISPRCasFinder	no		csx1,DEDDh,WYL,DinG,csa3,cas14j,cas3,RT	Orphan	AGGCGCCTGACGGCGCCAGTCGCGACGCGGAGCGGCGCTCCAACAGC	47	1	1	2166134-2166163	NZ_CP014226.1_1650276-1650305	NA	1	1	Orphan	csx1,DEDDh,WYL,DinG,csa3,cas14j,cas3,RT	NA,NA	NA|292aa|up_9|NZ_CP014226.1_2155205_2156081_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|310aa|up_8|NZ_CP014226.1_2156077_2157007_-	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|263aa|up_7|NZ_CP014226.1_2156993_2157782_-	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|161aa|up_6|NZ_CP014226.1_2157995_2158478_+	PRK11050, PRK11050, manganese-binding transcriptional regulator MntR	NA|205aa|up_5|NZ_CP014226.1_2158525_2159140_-	cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP synthase)/TenI	NA|176aa|up_4|NZ_CP014226.1_2159304_2159832_-	pfam00877, NLPC_P60, NlpC/P60 family	NA|178aa|up_3|NZ_CP014226.1_2160037_2160571_+	cd07233, GlxI_Zn, Glyoxalase I that uses Zn(++) as cofactor	NA|246aa|up_2|NZ_CP014226.1_2160638_2161376_-	cd07363, 45_DOPA_Dioxygenase, The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine	NA|147aa|up_1|NZ_CP014226.1_2163572_2164013_+	cd04776, HTH_GnyR, Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR	NA|568aa|up_0|NZ_CP014226.1_2164129_2165833_+	PRK08315, PRK08315, AMP-binding domain protein; Validated	NA|193aa|down_0|NZ_CP014226.1_2166237_2166816_-	PRK09162, PRK09162, hypoxanthine-guanine phosphoribosyltransferase; Provisional	NA|338aa|down_1|NZ_CP014226.1_2166869_2167883_-	PRK05337, PRK05337, beta-hexosaminidase; Provisional	NA|173aa|down_2|NZ_CP014226.1_2167971_2168490_-	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|222aa|down_3|NZ_CP014226.1_2168491_2169157_-	pfam17939, TetR_C_30, Tetracyclin repressor-like, C-terminal domain	NA|215aa|down_4|NZ_CP014226.1_2169351_2169996_+	PRK00215, PRK00215, transcriptional repressor LexA	NA|352aa|down_5|NZ_CP014226.1_2170036_2171092_+	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|224aa|down_6|NZ_CP014226.1_2171179_2171851_-	COG3235, COG3235, Predicted membrane protein [Function unknown]	NA|285aa|down_7|NZ_CP014226.1_2171872_2172727_-	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|531aa|down_8|NZ_CP014226.1_2172975_2174568_+	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	NA|98aa|down_9|NZ_CP014226.1_2174684_2174978_-	COG2916, Hns, DNA-binding protein H-NS [General function prediction only]
GCF_001545155.1_ASM154515v1	NZ_CP014226	Halomonas chromatireducens strain AGD 8-3 chromosome, complete genome	3	3527549-3527642	3	CRISPRCasFinder	no	DEDDh	csx1,DEDDh,WYL,DinG,csa3,cas14j,cas3,RT	Unclear	GAGGAGGCGCTGCAGCACCGCTCGGGGCTG	30	0	0	NA	NA	NA	1	1	Orphan	csx1,DEDDh,WYL,DinG,csa3,cas14j,cas3,RT	NA,NA|169aa|down_2|NZ_CP014226.1_3530280_3530787_-	NA|326aa|up_9|NZ_CP014226.1_3518156_3519134_-	COG4248, COG4248, Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]	NA|141aa|up_8|NZ_CP014226.1_3519735_3520158_-	COG3019, COG3019, Predicted metal-binding protein [General function prediction only]	NA|179aa|up_7|NZ_CP014226.1_3520249_3520786_+	COG2818, Tag, 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]	NA|356aa|up_6|NZ_CP014226.1_3520840_3521908_+	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase	NA|203aa|up_5|NZ_CP014226.1_3522052_3522661_-	PRK00170, PRK00170, azoreductase; Reviewed	NA|193aa|up_4|NZ_CP014226.1_3522846_3523425_-	PRK10543, PRK10543, superoxide dismutase [Fe]	NA|220aa|up_3|NZ_CP014226.1_3523535_3524195_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|140aa|up_2|NZ_CP014226.1_3524469_3524889_+	cd08354, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|206aa|up_1|NZ_CP014226.1_3524885_3525503_-	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|602aa|up_0|NZ_CP014226.1_3525611_3527417_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|262aa|down_0|NZ_CP014226.1_3528363_3529149_-	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|355aa|down_1|NZ_CP014226.1_3529141_3530206_-	pfam02628, COX15-CtaA, Cytochrome oxidase assembly protein	NA|169aa|down_2|NZ_CP014226.1_3530280_3530787_-	NA	NA|270aa|down_3|NZ_CP014226.1_3530910_3531720_-	cd06662, SURF1, SURF1 superfamily	NA|66aa|down_4|NZ_CP014226.1_3531718_3531916_+	pfam11137, DUF2909, Protein of unknown function (DUF2909)	NA|286aa|down_5|NZ_CP014226.1_3532014_3532872_-	cd01665, Cyt_c_Oxidase_III, Cytochrome c oxidase subunit III	NA|198aa|down_6|NZ_CP014226.1_3532868_3533462_-	PRK05089, PRK05089, cytochrome C oxidase assembly protein; Provisional	NA|546aa|down_7|NZ_CP014226.1_3533497_3535135_-	cd01663, Cyt_c_Oxidase_I, Cytochrome C oxidase subunit I	NA|373aa|down_8|NZ_CP014226.1_3535208_3536327_-	COG1622, CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]	NA|58aa|down_9|NZ_CP014226.1_3536520_3536694_-	pfam11174, DUF2970, Protein of unknown function (DUF2970)
GCF_001545155.1_ASM154515v1	NZ_CP014226	Halomonas chromatireducens strain AGD 8-3 chromosome, complete genome	4	3549533-3549616	4	CRISPRCasFinder	no		csx1,DEDDh,WYL,DinG,csa3,cas14j,cas3,RT	Orphan	CTCCTCCGAGGCGCCTACCGGCG	23	0	0	NA	NA	NA	1	1	Orphan	csx1,DEDDh,WYL,DinG,csa3,cas14j,cas3,RT	NA|100aa|up_8|NZ_CP014226.1_3543068_3543368_+,NA|48aa|up_7|NZ_CP014226.1_3543652_3543796_+,NA|71aa|up_3|NZ_CP014226.1_3547321_3547534_+,NA|103aa|down_9|NZ_CP014226.1_3564216_3564525_+	NA|651aa|up_9|NZ_CP014226.1_3540607_3542560_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|100aa|up_8|NZ_CP014226.1_3543068_3543368_+	NA	NA|48aa|up_7|NZ_CP014226.1_3543652_3543796_+	NA	NA|149aa|up_6|NZ_CP014226.1_3543971_3544418_+	cd05379, CAP_bacterial, Bacterial CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain proteins	NA|265aa|up_5|NZ_CP014226.1_3545514_3546309_-	COG3774, OCH1, Mannosyltransferase OCH1 and related enzymes [Cell envelope biogenesis, outer membrane]	NA|176aa|up_4|NZ_CP014226.1_3546479_3547007_+	TIGR03750, hypothetical_protein, conjugative transfer region protein, TIGR03750 family	NA|71aa|up_3|NZ_CP014226.1_3547321_3547534_+	NA	NA|239aa|up_2|NZ_CP014226.1_3547530_3548247_+	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system	NA|71aa|up_1|NZ_CP014226.1_3548418_3548631_+	PTZ00274, PTZ00274, cytochrome b5 reductase; Provisional	NA|109aa|up_0|NZ_CP014226.1_3549174_3549501_+	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|337aa|down_0|NZ_CP014226.1_3549850_3550861_+	pfam12281, NTP_transf_8, Nucleotidyltransferase	NA|445aa|down_1|NZ_CP014226.1_3551145_3552480_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|243aa|down_2|NZ_CP014226.1_3552888_3553617_-	COG3650, COG3650, Predicted membrane protein [Function unknown]	NA|767aa|down_3|NZ_CP014226.1_3553727_3556028_-	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional	NA|305aa|down_4|NZ_CP014226.1_3556129_3557044_+	cd08441, PBP2_MetR, The C-terminal substrate binding domain of LysR-type transcriptional regulator metR, which regulates the expression of methionine biosynthetic genes, contains type 2 periplasmic binding fold	NA|545aa|down_5|NZ_CP014226.1_3557030_3558665_-	PRK10604, PRK10604, sensor protein RstB; Provisional	NA|238aa|down_6|NZ_CP014226.1_3558668_3559382_-	PRK10701, PRK10701, DNA-binding transcriptional regulator RstA; Provisional	NA|965aa|down_7|NZ_CP014226.1_3559719_3562614_+	PRK07207, PRK07207, ribonucleoside-diphosphate reductase subunit alpha	NA|417aa|down_8|NZ_CP014226.1_3562687_3563938_+	PRK07209, PRK07209, ribonucleotide-diphosphate reductase subunit beta; Validated	NA|103aa|down_9|NZ_CP014226.1_3564216_3564525_+	NA
