assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001548255.1_ASM154825v1	NZ_AP014944	Staphylococcus schleiferi strain TSCC54	1	66853-68031	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6	WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,DEDDh,cas3,DinG,cas9,csa3	Type III-D,Type III-C,Type III-A,Type III-B	GATCGATAACTACCCCGAATAACAGGGGACGAGAAT,GATCGATAACTACCCCGAATAACAGGGGACGAGAAT,GATCGATAACTACCCCGAATAACAGGGGACGAGAA	36,36,35	0	0	NA	NA	NA:NA:NA	16,16,10	16	TypeIII-D,TypeIII-C,TypeIII-A,TypeIII-B	WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,DEDDh,cas3,DinG,cas9,csa3	NA|663aa|up_8|NZ_AP014944.1_57077_59066_+,NA|123aa|up_7|NZ_AP014944.1_60361_60730_+,NA|74aa|up_1|NZ_AP014944.1_65614_65836_+,NA	WYL|310aa|up_9|NZ_AP014944.1_55986_56916_+	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|663aa|up_8|NZ_AP014944.1_57077_59066_+	NA	NA|123aa|up_7|NZ_AP014944.1_60361_60730_+	NA	NA|539aa|up_6|NZ_AP014944.1_60729_62346_+	COG3378, COG3378, Phage associated DNA primase [General function prediction only]	NA|560aa|up_5|NZ_AP014944.1_62570_64250_+	smart00857, Resolvase, Resolvase, N terminal domain	NA|113aa|up_4|NZ_AP014944.1_64338_64677_+	pfam06106, SAUGI, S	NA|104aa|up_3|NZ_AP014944.1_64770_65082_+	pfam06124, DUF960, Staphylococcal protein of unknown function (DUF960)	NA|168aa|up_2|NZ_AP014944.1_65096_65600_+	COG4333, COG4333, Uncharacterized protein conserved in bacteria [Function unknown]	NA|74aa|up_1|NZ_AP014944.1_65614_65836_+	NA	NA|104aa|up_0|NZ_AP014944.1_66127_66439_-	pfam11867, DUF3387, Domain of unknown function (DUF3387)	cas1|302aa|down_0|NZ_AP014944.1_68104_69010_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|102aa|down_1|NZ_AP014944.1_69009_69315_+	TIGR01573, cas2, CRISPR-associated endonuclease Cas2	cas10|758aa|down_2|NZ_AP014944.1_69328_71602_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|142aa|down_3|NZ_AP014944.1_71604_72030_+	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	csm3gr7|215aa|down_4|NZ_AP014944.1_72031_72676_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|303aa|down_5|NZ_AP014944.1_72686_73595_+	TIGR01903, Hypothetical_protein	csm5gr7|341aa|down_6|NZ_AP014944.1_73597_74620_+	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	cas6|245aa|down_7|NZ_AP014944.1_75888_76623_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|1086aa|down_8|NZ_AP014944.1_78367_81625_+	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA	NA|241aa|down_9|NZ_AP014944.1_81625_82348_+	pfam14335, DUF4391, Domain of unknown function (DUF4391)
GCF_001548255.1_ASM154825v1	NZ_AP014944	Staphylococcus schleiferi strain TSCC54	2	76758-77005	2,2	CRISPRCasFinder,CRT	no	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6	WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,DEDDh,cas3,DinG,cas9,csa3	Type III-D,Type III-C,Type III-A,Type III-B	ATTCGATAACTACCCCGTAGAAGAGGGGACGAG,ATTCGATAACTACCNCCGTAGAAGAGGGGACGAG	33,34	0	0	NA	NA	NA:NA	3,3	3	TypeIII-D,TypeIII-C,TypeIII-A,TypeIII-B	WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,DEDDh,cas3,DinG,cas9,csa3	NA|74aa|up_9|NZ_AP014944.1_65614_65836_+,NA|58aa|down_9|NZ_AP014944.1_101200_101374_+	NA|74aa|up_9|NZ_AP014944.1_65614_65836_+	NA	NA|104aa|up_8|NZ_AP014944.1_66127_66439_-	pfam11867, DUF3387, Domain of unknown function (DUF3387)	cas1|302aa|up_7|NZ_AP014944.1_68104_69010_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|102aa|up_6|NZ_AP014944.1_69009_69315_+	TIGR01573, cas2, CRISPR-associated endonuclease Cas2	cas10|758aa|up_5|NZ_AP014944.1_69328_71602_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|142aa|up_4|NZ_AP014944.1_71604_72030_+	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	csm3gr7|215aa|up_3|NZ_AP014944.1_72031_72676_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|303aa|up_2|NZ_AP014944.1_72686_73595_+	TIGR01903, Hypothetical_protein	csm5gr7|341aa|up_1|NZ_AP014944.1_73597_74620_+	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	cas6|245aa|up_0|NZ_AP014944.1_75888_76623_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|1086aa|down_0|NZ_AP014944.1_78367_81625_+	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA	NA|241aa|down_1|NZ_AP014944.1_81625_82348_+	pfam14335, DUF4391, Domain of unknown function (DUF4391)	NA|667aa|down_2|NZ_AP014944.1_82383_84384_+	COG2189, COG2189, Adenine specific DNA methylase Mod [DNA replication, recombination, and repair]	NA|997aa|down_3|NZ_AP014944.1_84404_87395_+	COG3587, COG3587, Restriction endonuclease [Defense mechanisms]	NA|332aa|down_4|NZ_AP014944.1_89969_90965_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|1004aa|down_5|NZ_AP014944.1_91254_94266_+	pfam17961, Big_8, Bacterial Ig domain	NA|277aa|down_6|NZ_AP014944.1_94664_95495_+	cd06986, cupin_MmsR-like_N, AraC/XylS family transcriptional regulators similar to MmsR, N-terminal cupin domain	NA|739aa|down_7|NZ_AP014944.1_95496_97713_-	COG3345, GalA, Alpha-galactosidase [Carbohydrate transport and metabolism]	NA|327aa|down_8|NZ_AP014944.1_99830_100811_-	COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]	NA|58aa|down_9|NZ_AP014944.1_101200_101374_+	NA
GCF_001548255.1_ASM154825v1	NZ_AP014944	Staphylococcus schleiferi strain TSCC54	3	200142-200218	3	CRISPRCasFinder	no		WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,DEDDh,cas3,DinG,cas9,csa3	Orphan	CAGCTTTGTTGTCATCTTTGTGCATG	26	0	0	NA	NA	NA	1	1	Orphan	WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,DEDDh,cas3,DinG,cas9,csa3	NA|63aa|up_9|NZ_AP014944.1_188085_188274_+,NA	NA|63aa|up_9|NZ_AP014944.1_188085_188274_+	NA	NA|932aa|up_8|NZ_AP014944.1_188862_191658_+	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|194aa|up_7|NZ_AP014944.1_191740_192322_+	cd17246, RMtype1_S_SonII-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Shewanella oneidensis MR-1 S subunit (S	NA|519aa|up_6|NZ_AP014944.1_192323_193880_+	TIGR00497, hsdM, type I restriction system adenine methylase (hsdM)	NA|411aa|up_5|NZ_AP014944.1_193872_195105_+	cd17265, RMtype1_S_Eco4255III-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Escherichia coli O118:H16 07-4255 S subunit (S	NA|193aa|up_4|NZ_AP014944.1_195247_195826_-	pfam11193, DUF2812, Protein of unknown function (DUF2812)	NA|109aa|up_3|NZ_AP014944.1_195812_196139_-	pfam03551, PadR, Transcriptional regulator PadR-like family	NA|109aa|up_2|NZ_AP014944.1_196515_196842_+	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|160aa|up_1|NZ_AP014944.1_197678_198158_-	COG3477, COG3477, Predicted periplasmic/secreted protein [Function unknown]	NA|337aa|up_0|NZ_AP014944.1_198503_199514_+	COG2311, COG2311, Predicted membrane protein [Function unknown]	NA|238aa|down_0|NZ_AP014944.1_202144_202858_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|314aa|down_1|NZ_AP014944.1_202876_203818_-	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|477aa|down_2|NZ_AP014944.1_203834_205265_-	TIGR03810, arginine-ornithine_antiporter, arginine-ornithine antiporter	NA|336aa|down_3|NZ_AP014944.1_205384_206392_-	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated	NA|412aa|down_4|NZ_AP014944.1_206427_207663_-	PRK01388, PRK01388, arginine deiminase; Provisional	NA|160aa|down_5|NZ_AP014944.1_208088_208568_+	COG1438, ArgR, Arginine repressor [Transcription]	NA|198aa|down_6|NZ_AP014944.1_208665_209259_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|592aa|down_7|NZ_AP014944.1_209453_211229_+	PRK13977, PRK13977, myosin-cross-reactive antigen; Provisional	NA|196aa|down_8|NZ_AP014944.1_211488_212076_+	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|256aa|down_9|NZ_AP014944.1_212501_213269_+	COG3591, COG3591, V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]
GCF_001548255.1_ASM154825v1	NZ_AP014944	Staphylococcus schleiferi strain TSCC54	4	1549038-1550061	4,3,2,3	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas2,cas1,cas9	WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,DEDDh,cas3,DinG,cas9,csa3	 Type II-B,Type II-C,Type II-A,Type II-B, or Type II-C?	GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC,GTTTCATTTATACCTAAAATTACAGAGTACTAAAACNNNNNN,GTTTCATTTATACCTAAAATTACAGAGTACTAAAACCT,GTTTCATTTATACCTAAAATTACAGAGTACTAAAAC	36,42,38,36	0	0	NA	NA	NA:NA:NA:NA	15,15,13,13	15	TypeII-C,TypeII-B,TypeII-A,TypeII-B,orTypeII-C?	WYL,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,DEDDh,cas3,DinG,cas9,csa3	NA|105aa|up_8|NZ_AP014944.1_1539595_1539910_+,NA|198aa|up_2|NZ_AP014944.1_1546079_1546673_-,NA|284aa|up_0|NZ_AP014944.1_1547734_1548586_+,NA|337aa|down_0|NZ_AP014944.1_1550235_1551246_-,NA|69aa|down_7|NZ_AP014944.1_1559239_1559446_+,NA|88aa|down_8|NZ_AP014944.1_1560645_1560909_+	NA|485aa|up_9|NZ_AP014944.1_1537909_1539364_+	COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism]	NA|105aa|up_8|NZ_AP014944.1_1539595_1539910_+	NA	NA|269aa|up_7|NZ_AP014944.1_1540083_1540890_-	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|307aa|up_6|NZ_AP014944.1_1541225_1542146_-	PRK01212, PRK01212, homoserine kinase; Provisional	NA|355aa|up_5|NZ_AP014944.1_1542142_1543207_-	PRK07409, PRK07409, threonine synthase; Validated	NA|428aa|up_4|NZ_AP014944.1_1543212_1544496_-	PRK06349, PRK06349, homoserine dehydrogenase; Provisional	NA|451aa|up_3|NZ_AP014944.1_1544687_1546040_+	PRK09034, PRK09034, aspartate kinase; Reviewed	NA|198aa|up_2|NZ_AP014944.1_1546079_1546673_-	NA	NA|121aa|up_1|NZ_AP014944.1_1547183_1547546_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|284aa|up_0|NZ_AP014944.1_1547734_1548586_+	NA	NA|337aa|down_0|NZ_AP014944.1_1550235_1551246_-	NA	cas2|103aa|down_1|NZ_AP014944.1_1551258_1551567_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|301aa|down_2|NZ_AP014944.1_1551571_1552474_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1059aa|down_3|NZ_AP014944.1_1552473_1555650_-	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9	NA|457aa|down_4|NZ_AP014944.1_1556211_1557582_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|243aa|down_5|NZ_AP014944.1_1557584_1558313_-	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only]	NA|170aa|down_6|NZ_AP014944.1_1558593_1559103_-	pfam00565, SNase, Staphylococcal nuclease homolog	NA|69aa|down_7|NZ_AP014944.1_1559239_1559446_+	NA	NA|88aa|down_8|NZ_AP014944.1_1560645_1560909_+	NA	NA|324aa|down_9|NZ_AP014944.1_1561772_1562744_+	pfam00565, SNase, Staphylococcal nuclease homolog
