The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_AP014942	Staphylococcus aureus strain FDA209P	2775733	727314	735134	2775733		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|727314_728370_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|728369_729056_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|729030_729504_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093556.1|729845_730286_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637687.1|730565_731150_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|731248_731962_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|731965_732385_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|732386_733055_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604515.1|733405_733999_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	43.5	1.2e-38
WP_001217794.1|733982_735134_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	3.5e-23
>prophage 2
NZ_AP014942	Staphylococcus aureus strain FDA209P	2775733	747105	761835	2775733		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663025.1|747105_748164_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	27.3	1.5e-20
WP_000197275.1|748458_749001_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429006.1|749680_750598_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_031797439.1|750687_750789_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060829053.1|750866_752372_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	1.5e-58
WP_000930014.1|752712_753213_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_042727549.1|753232_754099_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|754899_755298_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|755260_757366_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|757483_758455_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|758968_759124_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|759162_760134_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|760120_761077_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616842.1|761073_761835_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 3
NZ_AP014942	Staphylococcus aureus strain FDA209P	2775733	840537	860911	2775733	integrase,coat,terminase	Staphylococcus_phage(81.82%)	28	843074:843090	858173:858189
WP_000571218.1|840537_841563_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	1.2e-27
WP_000520233.1|841555_842251_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000732326.1|842268_843090_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
843074:843090	attL	TTATTCCTGCTAAATAA	NA	NA	NA	NA
WP_000264181.1|843232_844453_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.3	4.6e-98
WP_042727546.1|844540_845269_-	staphylococcal enterotoxin type K	NA	A0EX09	Staphylococcus_phage	31.8	1.6e-21
WP_001033317.1|845292_846021_-	staphylococcal enterotoxin type Q	NA	A0EX09	Staphylococcus_phage	35.4	7.9e-29
WP_000142630.1|846195_846930_-	helix-turn-helix transcriptional regulator	NA	Q4ZE79	Staphylococcus_phage	98.4	8.5e-132
WP_001063624.1|847079_847292_+	helix-turn-helix transcriptional regulator	NA	Q4ZE78	Staphylococcus_phage	98.6	3.4e-33
WP_001138298.1|847292_847565_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	100.0	3.4e-46
WP_012990927.1|847576_847723_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058492.1|847715_847925_+	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	95.7	7.7e-30
WP_001103944.1|847927_848248_+	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	58.2	6.5e-20
WP_042727545.1|848314_849184_+	primase C-terminal domain-containing protein	NA	A0A1W6JQL5	Staphylococcus_phage	95.5	3.0e-160
WP_042727544.1|849200_850658_+	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	96.1	4.6e-278
WP_042727543.1|850959_851322_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	93.3	1.2e-62
WP_042727542.1|851323_851608_+	hypothetical protein	NA	A0A1W6JQE4	Staphylococcus_phage	92.6	1.4e-45
WP_042727541.1|851604_852246_+	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	94.4	7.7e-113
WP_042727540.1|852819_853161_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	97.3	5.4e-57
WP_000846284.1|853172_853751_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.9	4.8e-29
WP_000448775.1|853768_853987_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000771380.1|854037_854565_+|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	95.4	2.1e-87
WP_001656917.1|854696_854909_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	97.1	5.4e-31
WP_001293071.1|854905_855475_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	98.4	4.6e-101
WP_000801979.1|855751_856720_+	Abi family protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	5.9e-24
WP_001035618.1|856954_857509_-	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	76.1	4.8e-71
WP_000752917.1|858542_858737_+	CsbD family protein	NA	NA	NA	NA	NA
858173:858189	attR	TTATTCCTGCTAAATAA	NA	NA	NA	NA
WP_001183858.1|858970_859822_-	DUF368 domain-containing protein	NA	NA	NA	NA	NA
WP_000168845.1|860149_860911_+	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
>prophage 4
NZ_AP014942	Staphylococcus aureus strain FDA209P	2775733	1020636	1029109	2775733		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1020636_1021119_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010407.1|1021105_1022230_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1022233_1022938_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1022937_1023201_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666806.1|1023202_1023874_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_042727722.1|1023866_1026056_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
WP_000483720.1|1026034_1027519_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.9e-45
WP_042727723.1|1027511_1028540_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_000238669.1|1028542_1029109_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 5
NZ_AP014942	Staphylococcus aureus strain FDA209P	2775733	1287143	1303350	2775733	integrase,head,terminase,portal	Staphylococcus_phage(54.17%)	27	1279346:1279363	1307083:1307100
1279346:1279363	attL	ATTCAATCATTAATATAT	NA	NA	NA	NA
WP_001836882.1|1287143_1288271_-|integrase	site-specific integrase	integrase	A0A0C5AN64	Paenibacillus_phage	31.4	6.2e-33
WP_001183750.1|1288323_1289019_-	Ltp family lipoprotein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	50.3	3.6e-07
WP_000554410.1|1289030_1289414_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000664917.1|1289560_1289953_-	helix-turn-helix domain-containing protein	NA	A0A2I6PE55	Staphylococcus_phage	53.6	1.6e-28
WP_001209962.1|1290120_1290339_+	DUF739 family protein	NA	A0A2I6PE94	Staphylococcus_phage	62.5	4.9e-19
WP_000932238.1|1290365_1290641_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000392387.1|1290905_1291076_+	hypothetical protein	NA	Q4ZDZ8	Staphylococcus_virus	89.3	2.4e-21
WP_000800341.1|1291064_1291271_-	hypothetical protein	NA	A1BTY8	Staphylococcus_virus	75.0	3.3e-25
WP_001157025.1|1291331_1292015_+	phage repressor protein	NA	A9CR56	Staphylococcus_phage	85.6	5.2e-107
WP_000072840.1|1292113_1292275_+	DUF1270 family protein	NA	R4IH12	Staphylococcus_phage	69.8	1.1e-12
WP_000786993.1|1292361_1292679_+	DUF2482 family protein	NA	W5RAK4	Staphylococcus_phage	80.6	1.6e-39
WP_000786634.1|1292668_1292935_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	53.6	3.0e-18
WP_001004327.1|1292939_1293476_+	host-nuclease inhibitor Gam family protein	NA	A0A0H3U480	Staphylococcus_phage	82.5	1.7e-76
WP_042727645.1|1293476_1294256_+	ATP-binding protein	NA	A0A1W6JPW0	Staphylococcus_phage	87.6	6.7e-127
WP_000702007.1|1294282_1294831_+	hypothetical protein	NA	A7TWM8	Staphylococcus_phage	92.9	1.1e-91
WP_000929466.1|1294843_1295746_+	DnaD domain protein	NA	A0A1P8L6F0	Staphylococcus_phage	52.0	2.9e-49
WP_000946005.1|1295746_1296037_+	hypothetical protein	NA	A0A223LIA9	Staphylococcus_phage	58.1	7.2e-18
WP_000714410.1|1296051_1296216_+	hypothetical protein	NA	A0A0E3T9L7	Staphylococcus_phage	88.9	1.1e-18
WP_000860979.1|1296215_1296527_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000185176.1|1296519_1297050_+	nucleotide pyrophosphohydrolase	NA	A0A1P8VVP1	Streptococcus_phage	38.2	5.2e-22
WP_025174970.1|1297191_1297299_+	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	87.5	3.2e-08
WP_000835355.1|1297295_1297760_+	hypothetical protein	NA	C9E2P0	Enterococcus_phage	43.0	3.2e-20
WP_000653930.1|1298036_1298525_+	hypothetical protein	NA	R9TMH4	Paenibacillus_phage	27.7	4.3e-07
WP_000090969.1|1298677_1299106_+	helix-turn-helix domain-containing protein	NA	A1EAE0	Streptococcus_phage	45.1	1.1e-25
WP_000207537.1|1299092_1300367_+|terminase	PBSX family phage terminase large subunit	terminase	Q4ZE37	Staphylococcus_virus	76.4	1.9e-195
WP_000158568.1|1300379_1301828_+|portal	phage portal protein	portal	Q4ZE36	Staphylococcus_virus	69.4	7.4e-196
WP_042727644.1|1301817_1303350_+|head	phage head morphogenesis protein	head	Q4ZE35	Staphylococcus_virus	61.6	1.9e-109
1307083:1307100	attR	ATATATTAATGATTGAAT	NA	NA	NA	NA
>prophage 6
NZ_AP014942	Staphylococcus aureus strain FDA209P	2775733	1585290	1593620	2775733	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1585290_1586076_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_060829067.1|1586201_1587092_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	36.0	3.4e-26
WP_001062187.1|1587101_1588448_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000683929.1|1588561_1589662_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624583.1|1589664_1590342_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1590472_1591579_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217257.1|1591802_1593620_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.3	7.9e-54
>prophage 7
NZ_AP014942	Staphylococcus aureus strain FDA209P	2775733	1661441	1670484	2775733	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1661441_1661960_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000594991.1|1661981_1664255_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	5.2e-63
WP_000749795.1|1664457_1666737_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1667011_1667272_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1667290_1668430_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019178.1|1668452_1669478_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005768.1|1669479_1670484_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 8
NZ_AP014942	Staphylococcus aureus strain FDA209P	2775733	1795789	1859947	2775733	tRNA,protease	Staphylococcus_phage(95.56%)	62	NA	NA
WP_001050538.1|1795789_1802350_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	99.0	1.6e-309
WP_000836465.1|1802675_1802987_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001808015.1|1803008_1805426_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.3	0.0e+00
WP_001025061.1|1805713_1806895_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|1807004_1807958_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1807954_1808518_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1808637_1809039_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1809610_1810438_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1810440_1810560_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1810671_1811673_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1811794_1812259_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_042727556.1|1812271_1813453_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	1.5e-226
WP_000493892.1|1813463_1814096_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000077358.1|1814102_1815146_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	5.3e-196
WP_001261668.1|1815626_1817129_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
WP_000221177.1|1817651_1817966_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
WP_000989122.1|1817965_1819258_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.3	9.4e-227
WP_001032833.1|1819344_1820199_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1820474_1820699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671052.1|1820897_1821368_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_001153742.1|1821480_1821924_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|1821910_1822354_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001168901.1|1822649_1823285_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1823724_1824438_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1824697_1825000_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1825255_1825621_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623478.1|1825617_1825971_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	100.0	2.6e-22
WP_000453314.1|1826353_1827187_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	100.0	5.4e-159
WP_000366163.1|1827398_1828307_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000933822.1|1828431_1829625_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109906.1|1829996_1831589_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_001834463.1|1831966_1832713_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.4e-142
WP_000672014.1|1832717_1833191_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_000718107.1|1833256_1833514_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778525.1|1833510_1834512_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.9	2.2e-186
WP_000348374.1|1834516_1835995_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.4	8.1e-283
WP_072433592.1|1836153_1836609_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	97.9	5.7e-78
WP_001795535.1|1836911_1837562_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_000070655.1|1837642_1838638_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	98.8	6.2e-77
WP_000669027.1|1838713_1839340_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	93.8	5.3e-90
WP_000627537.1|1839380_1839722_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	95.6	3.0e-55
WP_000414214.1|1839822_1840395_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	96.6	1.1e-25
WP_000864143.1|1840591_1841149_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	96.2	2.7e-77
WP_000375476.1|1841521_1841698_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000731418.1|1843249_1843693_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000745473.1|1843692_1844136_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000221409.1|1844674_1847098_+	polysaccharide lyase 8 family protein	NA	NA	NA	NA	NA
WP_001036003.1|1847221_1847599_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000759947.1|1847804_1848245_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_001836790.1|1848289_1849903_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000095395.1|1849917_1850217_+	WXG100 family type VII secretion target	NA	NA	NA	NA	NA
WP_047210362.1|1850343_1851588_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	62.1	1.2e-125
WP_060829072.1|1851580_1853137_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.2	2.0e-287
WP_001791797.1|1853300_1853435_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038690.1|1853499_1854219_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	1.9e-131
WP_001038757.1|1854369_1855086_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	99.2	2.4e-131
WP_011447030.1|1855187_1855295_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038706.1|1855243_1855963_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.2	5.1e-129
WP_001038872.1|1856083_1856803_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	1.3e-129
WP_001039444.1|1856860_1857583_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	100.0	6.4e-132
WP_001039433.1|1857707_1858415_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	99.6	7.7e-130
WP_001092776.1|1859377_1859947_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	62.6	2.6e-51
>prophage 9
NZ_AP014942	Staphylococcus aureus strain FDA209P	2775733	1952272	2044271	2775733	integrase,transposase,tail,capsid,tRNA,head,protease,terminase,portal,holin	Staphylococcus_phage(90.79%)	110	2000085:2000100	2050110:2050125
WP_000545370.1|1952272_1953700_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_000027917.1|1953712_1955170_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_000170162.1|1955171_1955474_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957020.1|1955840_1957379_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831695.1|1957467_1958667_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774565.1|1958679_1960683_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	5.8e-114
WP_000992921.1|1960686_1962879_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272070.1|1962875_1963568_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|1963739_1964042_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|1964150_1965446_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827750.1|1966305_1967472_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434934.1|1967502_1967829_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669861.1|1968120_1968294_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|1968274_1968877_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040866.1|1969147_1969969_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
WP_000284433.1|1969961_1971431_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	3.5e-108
WP_000897635.1|1971614_1972691_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177828.1|1972710_1973505_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|1973576_1973684_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323164.1|1973694_1975257_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275706.1|1975461_1976559_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.9	2.5e-47
WP_000149686.1|1976930_1977491_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|1977543_1978473_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001808146.1|1978614_1979934_+|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_001790680.1|1980188_1980362_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021216.1|1980413_1981793_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181322.1|1981912_1982941_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|1983210_1983612_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|1984184_1984358_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188074.1|1984808_1985849_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713070.1|1985905_1986748_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|1986744_1987302_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|1987361_1987886_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|1988006_1988570_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|1988635_1989376_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|1989375_1990248_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645725.1|1990244_1990925_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991303.1|1990925_1991822_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691584.1|1991818_1992199_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|1992457_1992634_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|1992876_1992975_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068523.1|1993174_1994461_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_031864371.1|1995040_1997104_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000669789.1|1998061_1998241_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|1998551_1998812_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702262.1|1998864_1999215_-	complement inhibitor SCIN-A	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
2000085:2000100	attL	ATAAAAATAACCACAC	NA	NA	NA	NA
WP_000920041.1|2000711_2001203_-	staphylokinase	NA	A7TWR8	Staphylococcus_phage	100.0	8.0e-86
WP_000861038.1|2001393_2002149_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|2002160_2002415_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|2002466_2002574_+	hypothetical protein	NA	NA	NA	NA	NA
WP_072353918.1|2002626_2002803_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	94.8	5.5e-21
WP_000340977.1|2002945_2003320_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_001262620.1|2003375_2003663_-	hypothetical protein	NA	C5I682	Staphylococcus_phage	100.0	9.9e-44
WP_001000058.1|2003708_2003861_-	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
WP_042727565.1|2003853_2007636_-	phage minor structural protein	NA	R9QT86	Staphylococcus_phage	100.0	0.0e+00
WP_001154317.1|2007651_2009142_-|tail	phage tail family protein	tail	R9QST9	Staphylococcus_phage	100.0	3.1e-298
WP_042727566.1|2009141_2013791_-|tail	phage tail tape measure protein	tail	R9QSQ8	Staphylococcus_phage	100.0	0.0e+00
WP_000570353.1|2013846_2013969_-	hypothetical protein	NA	D2JLF6	Staphylococcus_phage	100.0	6.9e-15
WP_000442601.1|2014028_2014475_-	hypothetical protein	NA	D2JLF5	Staphylococcus_phage	100.0	5.4e-73
WP_000570652.1|2014539_2015493_-	Ig-like domain-containing protein	NA	A7TWD0	Staphylococcus_phage	100.0	6.2e-175
WP_000611452.1|2015493_2015874_-	hypothetical protein	NA	D2JLF3	Staphylococcus_phage	100.0	5.8e-68
WP_000501244.1|2015870_2016248_-	HK97 gp10 family phage protein	NA	D2JLF2	Staphylococcus_phage	100.0	1.1e-61
WP_000975314.1|2016247_2016583_-|head,tail	head-tail adaptor protein	head,tail	A7TWC7	Staphylococcus_phage	100.0	1.1e-59
WP_001177483.1|2016569_2016902_-|head,tail	phage head-tail connector protein	head,tail	D2JLF0	Staphylococcus_phage	100.0	2.1e-58
WP_001252099.1|2016910_2017069_-	hypothetical protein	NA	D2JLE9	Staphylococcus_phage	100.0	3.2e-20
WP_000849950.1|2017104_2018352_-|capsid	phage major capsid protein	capsid	A7TWC4	Staphylococcus_phage	100.0	5.0e-209
WP_000032525.1|2018439_2019024_-|head,protease	HK97 family phage prohead protease	head,protease	D2JLE7	Staphylococcus_phage	100.0	9.8e-107
WP_000511068.1|2019016_2020267_-|portal	phage portal protein	portal	R9QSV8	Staphylococcus_phage	100.0	1.7e-236
WP_001836552.1|2020272_2020473_-	hypothetical protein	NA	R9QT78	Staphylococcus_phage	100.0	7.6e-27
WP_000133306.1|2020486_2022181_-|terminase	terminase	terminase	A0A1V0E5G5	Staphylococcus_phage	100.0	0.0e+00
WP_000919026.1|2022183_2022651_-|terminase	phage terminase small subunit P27 family	terminase	D2JLE3	Staphylococcus_phage	100.0	1.1e-81
WP_000817289.1|2022780_2023125_-	HNH endonuclease	NA	D2JLE2	Staphylococcus_phage	100.0	4.2e-65
WP_000406187.1|2023140_2023593_-	nucleoside triphosphate pyrophosphohydrolase family protein	NA	R9QTP3	Staphylococcus_phage	100.0	1.8e-79
WP_000282753.1|2023707_2024169_-	hypothetical protein	NA	R9QT84	Staphylococcus_phage	100.0	8.7e-74
WP_000265041.1|2024191_2024392_-	DUF1514 family protein	NA	R9QT57	Staphylococcus_phage	100.0	1.1e-28
WP_001005262.1|2024391_2025042_-	hypothetical protein	NA	D2JLD8	Staphylococcus_phage	100.0	8.9e-117
WP_000595267.1|2025200_2025350_-	hypothetical protein	NA	R9QSU6	Staphylococcus_phage	100.0	1.8e-17
WP_000195810.1|2025346_2025553_-	DUF1381 domain-containing protein	NA	S4V684	Staphylococcus_phage	100.0	7.6e-30
WP_000185669.1|2025589_2026126_-	dUTP diphosphatase	NA	R4IG63	Staphylococcus_phage	100.0	9.4e-96
WP_001065083.1|2026118_2026367_-	DUF1024 family protein	NA	A0A2K9VBU0	Staphylococcus_phage	100.0	3.1e-38
WP_001105621.1|2026359_2026644_-	hypothetical protein	NA	E9LT36	Staphylococcus_phage	100.0	2.7e-46
WP_000982708.1|2026640_2027090_-	hypothetical protein	NA	A0A2I6PDH2	Staphylococcus_phage	100.0	9.3e-81
WP_000693615.1|2027277_2027664_-	hypothetical protein	NA	I1W655	Staphylococcus_phage	100.0	4.1e-69
WP_000131377.1|2027677_2027920_-	hypothetical protein	NA	R9QT89	Staphylococcus_phage	100.0	3.0e-41
WP_000101270.1|2027923_2028292_-	hypothetical protein	NA	A0A0E3XD52	Staphylococcus_phage	100.0	6.7e-53
WP_000401964.1|2028304_2028709_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0E3XBN4	Staphylococcus_phage	100.0	1.4e-72
WP_000338528.1|2028717_2028936_-	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_000148329.1|2028942_2029836_-	DnaD domain-containing protein	NA	A0A0E3TAG7	Staphylococcus_phage	100.0	1.1e-141
WP_000934769.1|2029865_2030336_-	single-stranded DNA-binding protein	NA	A0A0E3T9H6	Staphylococcus_phage	100.0	5.7e-81
WP_071621397.1|2030336_2030954_-	MBL fold metallo-hydrolase	NA	S4SWA4	Staphylococcus_phage	100.0	9.1e-87
WP_000138475.1|2031034_2031955_-	recombinase RecT	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_001813910.1|2031956_2033912_-	AAA family ATPase	NA	R9QT82	Staphylococcus_phage	100.0	0.0e+00
WP_042727568.1|2033908_2034172_-	hypothetical protein	NA	R9QT48	Staphylococcus_phage	100.0	7.7e-43
WP_000291488.1|2034180_2034441_-	DUF1108 family protein	NA	A0A2I6PDH1	Staphylococcus_phage	100.0	2.6e-43
WP_000066020.1|2034533_2034695_-	DUF1270 domain-containing protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
WP_001798161.1|2034691_2035012_-	DUF771 domain-containing protein	NA	R9QT52	Staphylococcus_phage	100.0	1.5e-56
WP_000801108.1|2035070_2035298_+	hypothetical protein	NA	A7TWL9	Staphylococcus_phage	100.0	1.7e-38
WP_000389906.1|2035299_2035491_-	hypothetical protein	NA	A7TWL8	Staphylococcus_phage	100.0	2.8e-26
WP_000768245.1|2035540_2035897_+	DUF2513 domain-containing protein	NA	A0A1P8L6H1	Staphylococcus_phage	100.0	6.1e-59
WP_001148859.1|2035891_2036086_-	hypothetical protein	NA	A0A1P8L6G6	Staphylococcus_phage	100.0	4.3e-19
WP_001148565.1|2036101_2036890_-	phage antirepressor KilAC domain-containing protein	NA	R9QSV3	Staphylococcus_phage	100.0	1.2e-144
WP_000639922.1|2036905_2037148_-	DUF739 family protein	NA	R9QSU1	Staphylococcus_phage	100.0	9.5e-40
WP_001083967.1|2037311_2038028_+	helix-turn-helix domain-containing protein	NA	R9QTP6	Staphylococcus_phage	100.0	9.2e-131
WP_000804508.1|2038039_2038897_+	restriction endonuclease	NA	R9QTP0	Staphylococcus_phage	100.0	1.2e-161
WP_000705243.1|2038941_2039124_+	hypothetical protein	NA	R9QT81	Staphylococcus_phage	100.0	5.3e-27
WP_001013104.1|2039159_2039306_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_000191459.1|2039302_2039917_-	hypothetical protein	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
WP_000857176.1|2040024_2041062_+|integrase	site-specific integrase	integrase	A7TWL3	Staphylococcus_phage	100.0	3.4e-179
WP_000595401.1|2042180_2043197_-	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.3	2.3e-26
WP_000791404.1|2043218_2044271_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.6	2.5e-36
2050110:2050125	attR	ATAAAAATAACCACAC	NA	NA	NA	NA
>prophage 1
NZ_AP014943	Staphylococcus aureus strain FDA209P plasmid pFDA209P, complete sequence	27490	10055	18966	27490	transposase	Staphylococcus_phage(57.14%)	10	NA	NA
WP_000277738.1|10055_11702_-|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	98.4	1.0e-289
WP_000378396.1|12064_14245_-	cadmium-translocating P-type ATPase CadA	NA	E4ZFI9	Streptococcus_phage	63.7	9.3e-251
WP_000159128.1|14237_14603_-	winged helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	47.8	8.5e-24
WP_000361064.1|14840_15218_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001105942.1|15312_15987_+|transposase	IS6-like element ISSau6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	88.4	1.3e-113
WP_001035802.1|16021_16234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000633163.1|16553_16889_+	recombinase family protein	NA	NA	NA	NA	NA
WP_000120605.1|16949_17264_+	As(III)-sensing metalloregulatory transcriptional repressor ArsR	NA	A0A2H4PQT4	Staphylococcus_phage	73.1	4.7e-39
WP_001834181.1|17260_18553_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	81.4	3.0e-188
WP_000358995.1|18570_18966_+	thioredoxin-dependent arsenate reductase	NA	A0A2H4PQT9	Staphylococcus_phage	86.3	8.5e-62
