assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001548295.1_ASM154829v1	NZ_AP014942	Staphylococcus aureus strain FDA209P	1	144856-144937	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	3	144880-144913|144880-144913|144880-144913	NZ_AP014942.1_1429133-1429100|NZ_AP014942.1_1205738-1205771|NZ_AP014942.1_2619715-2619748	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|402aa|up_9|NZ_AP014942.1_134001_135207_+,NA|68aa|down_0|NZ_AP014942.1_145000_145204_-	NA|402aa|up_9|NZ_AP014942.1_134001_135207_+	NA	NA|402aa|up_8|NZ_AP014942.1_135207_136413_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|186aa|up_7|NZ_AP014942.1_136423_136981_+	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|296aa|up_6|NZ_AP014942.1_136980_137868_+	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|421aa|up_5|NZ_AP014942.1_137921_139184_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|NZ_AP014942.1_139260_140406_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|109aa|up_3|NZ_AP014942.1_140470_140797_-	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|128aa|up_2|NZ_AP014942.1_140803_141187_-	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|496aa|up_1|NZ_AP014942.1_141613_143101_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|320aa|up_0|NZ_AP014942.1_143747_144707_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|68aa|down_0|NZ_AP014942.1_145000_145204_-	NA	NA|171aa|down_1|NZ_AP014942.1_145382_145895_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|247aa|down_2|NZ_AP014942.1_146236_146977_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|325aa|down_3|NZ_AP014942.1_146990_147965_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|254aa|down_4|NZ_AP014942.1_147961_148723_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|344aa|down_5|NZ_AP014942.1_148735_149767_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|120aa|down_6|NZ_AP014942.1_149983_150343_+	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|342aa|down_7|NZ_AP014942.1_150516_151542_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|417aa|down_8|NZ_AP014942.1_151927_153178_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|2392aa|down_9|NZ_AP014942.1_153624_160800_+	PRK12467, PRK12467, peptide synthase; Provisional
GCF_001548295.1_ASM154829v1	NZ_AP014942	Staphylococcus aureus strain FDA209P	2	268101-268241	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	GGGCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGG	53	1	10	268154-268188|268154-268188|268154-268188|268154-268188|268154-268188|268154-268188|268154-268188|268154-268188|268154-268188|268154-268188	NZ_AP014942.1_839224-839190|NZ_AP014942.1_839280-839246|NZ_AP014942.1_1205817-1205851|NZ_AP014942.1_2297403-2297369|NZ_AP014942.1_2461917-2461883|NZ_AP014942.1_2734134-2734100|NZ_AP014942.1_758700-758734|NZ_AP014942.1_1117601-1117635|NZ_AP014942.1_1474147-1474181|NZ_AP014942.1_2331637-2331671	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|45aa|down_1|NZ_AP014942.1_269271_269406_+	NA|342aa|up_9|NZ_AP014942.1_255520_256546_+	cd08237, ribitol-5-phosphate_DH, ribitol-5-phosphate dehydrogenase	NA|563aa|up_8|NZ_AP014942.1_256567_258256_+	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|574aa|up_7|NZ_AP014942.1_258288_260010_+	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1	NA|225aa|up_6|NZ_AP014942.1_260153_260828_+	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA	NA|247aa|up_5|NZ_AP014942.1_262829_263570_+	PRK14084, PRK14084, DNA-binding response regulator	NA|148aa|up_4|NZ_AP014942.1_263682_264126_+	PRK04125, PRK04125, antiholin-like protein LrgA	NA|234aa|up_3|NZ_AP014942.1_264118_264820_+	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional	NA|235aa|up_2|NZ_AP014942.1_264927_265632_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|264aa|up_1|NZ_AP014942.1_265780_266572_+	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism]	NA|479aa|up_0|NZ_AP014942.1_266587_268024_+	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed	NA|254aa|down_0|NZ_AP014942.1_268491_269253_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|45aa|down_1|NZ_AP014942.1_269271_269406_+	NA	NA|305aa|down_2|NZ_AP014942.1_269503_270418_-	TIGR02152, Putative_ribokinase, ribokinase	NA|135aa|down_3|NZ_AP014942.1_270445_270850_-	PRK11797, PRK11797, D-ribose pyranase; Provisional	NA|294aa|down_4|NZ_AP014942.1_270864_271746_-	pfam06800, Sugar_transport, Sugar transport protein	NA|333aa|down_5|NZ_AP014942.1_271977_272976_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|459aa|down_6|NZ_AP014942.1_273459_274836_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|331aa|down_7|NZ_AP014942.1_275069_276062_+	COG3049, COG3049, Penicillin V acylase and related amidases [Cell envelope biogenesis, outer membrane]	NA|317aa|down_8|NZ_AP014942.1_276387_277338_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|220aa|down_9|NZ_AP014942.1_277389_278049_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]
GCF_001548295.1_ASM154829v1	NZ_AP014942	Staphylococcus aureus strain FDA209P	3	696256-696354	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAGAGCCCCTAATTAATAAATTAAAAGGGG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|39aa|up_2|NZ_AP014942.1_694283_694400_+,NA|230aa|down_2|NZ_AP014942.1_698175_698865_-,NA|130aa|down_4|NZ_AP014942.1_699501_699891_+,NA|100aa|down_5|NZ_AP014942.1_700028_700328_+	NA|336aa|up_9|NZ_AP014942.1_686062_687070_+	pfam01384, PHO4, Phosphate transporter family	NA|266aa|up_8|NZ_AP014942.1_687658_688456_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|215aa|up_7|NZ_AP014942.1_688816_689461_+	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|717aa|up_6|NZ_AP014942.1_690157_692308_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|120aa|up_5|NZ_AP014942.1_692453_692813_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|239aa|up_4|NZ_AP014942.1_693002_693719_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|158aa|up_3|NZ_AP014942.1_693718_694192_+	COG3542, COG3542, Uncharacterized conserved protein [Function unknown]	NA|39aa|up_2|NZ_AP014942.1_694283_694400_+	NA	NA|215aa|up_1|NZ_AP014942.1_694544_695189_+	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|289aa|up_0|NZ_AP014942.1_695304_696171_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|407aa|down_0|NZ_AP014942.1_696371_697592_+	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|163aa|down_1|NZ_AP014942.1_697588_698077_+	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|230aa|down_2|NZ_AP014942.1_698175_698865_-	NA	NA|148aa|down_3|NZ_AP014942.1_698991_699435_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|130aa|down_4|NZ_AP014942.1_699501_699891_+	NA	NA|100aa|down_5|NZ_AP014942.1_700028_700328_+	NA	NA|181aa|down_6|NZ_AP014942.1_700407_700950_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|189aa|down_7|NZ_AP014942.1_701045_701612_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|153aa|down_8|NZ_AP014942.1_701613_702072_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|228aa|down_9|NZ_AP014942.1_702074_702758_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed
GCF_001548295.1_ASM154829v1	NZ_AP014942	Staphylococcus aureus strain FDA209P	4	749150-749232	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|69aa|up_9|NZ_AP014942.1_735807_736014_+,NA|34aa|down_1|NZ_AP014942.1_750687_750789_+,NA|52aa|down_8|NZ_AP014942.1_758968_759124_+	NA|69aa|up_9|NZ_AP014942.1_735807_736014_+	NA	NA|237aa|up_8|NZ_AP014942.1_736101_736812_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NZ_AP014942.1_736795_737800_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NZ_AP014942.1_738273_740214_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NZ_AP014942.1_740483_742367_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NZ_AP014942.1_742378_744160_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NZ_AP014942.1_744381_745359_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_AP014942.1_745351_746866_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_AP014942.1_747105_748164_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_AP014942.1_748458_749001_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NZ_AP014942.1_749680_750598_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NZ_AP014942.1_750687_750789_+	NA	NA|502aa|down_2|NZ_AP014942.1_750866_752372_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NZ_AP014942.1_752712_753213_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NZ_AP014942.1_753232_754099_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NZ_AP014942.1_754899_755298_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NZ_AP014942.1_755260_757366_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NZ_AP014942.1_757483_758455_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NZ_AP014942.1_758968_759124_+	NA	NA|324aa|down_9|NZ_AP014942.1_759162_760134_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_001548295.1_ASM154829v1	NZ_AP014942	Staphylococcus aureus strain FDA209P	5	795667-795749	5	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	CCAACTTGCATTGTCTGTAGAAATT	25	1	1	795692-795724	NZ_AP014942.1_1942283-1942315	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|280aa|up_9|NZ_AP014942.1_782905_783745_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_AP014942.1_783918_784569_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_AP014942.1_784565_784802_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_AP014942.1_785070_787056_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_AP014942.1_787063_789910_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_AP014942.1_790529_791462_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_AP014942.1_791467_792307_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_AP014942.1_792314_792800_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_AP014942.1_792807_794247_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_AP014942.1_794313_795249_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_AP014942.1_796014_796926_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_AP014942.1_796922_797918_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_AP014942.1_798028_798973_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_AP014942.1_799545_800133_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_AP014942.1_800375_801278_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_AP014942.1_801980_802610_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_AP014942.1_803313_804327_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_AP014942.1_804379_805390_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_AP014942.1_805528_806719_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_AP014942.1_806840_807602_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_001548295.1_ASM154829v1	NZ_AP014942	Staphylococcus aureus strain FDA209P	6	838807-838888	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	3	838831-838864|838831-838864|838831-838864	NZ_AP014942.1_1429100-1429133|NZ_AP014942.1_1205771-1205738|NZ_AP014942.1_2619748-2619715	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|194aa|up_9|NZ_AP014942.1_831910_832492_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_AP014942.1_832564_833182_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_AP014942.1_833336_833831_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_AP014942.1_834229_834652_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_AP014942.1_834799_835516_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_AP014942.1_835598_836138_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_AP014942.1_836287_836608_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_AP014942.1_836751_837108_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_AP014942.1_837265_837646_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_AP014942.1_837824_838703_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_AP014942.1_839612_839999_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_AP014942.1_839991_840288_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_AP014942.1_840537_841563_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_AP014942.1_841555_842251_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_AP014942.1_842268_843090_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NZ_AP014942.1_843232_844453_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|243aa|down_6|NZ_AP014942.1_844540_845269_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|down_7|NZ_AP014942.1_845292_846021_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|245aa|down_8|NZ_AP014942.1_846195_846930_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|71aa|down_9|NZ_AP014942.1_847079_847292_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain
GCF_001548295.1_ASM154829v1	NZ_AP014942	Staphylococcus aureus strain FDA209P	7	1121488-1121674	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	GGCGGGGCCCCAACATAGA	19	3	40	1121507-1121543|1121507-1121543|1121507-1121543|1121507-1121543|1121507-1121543|1121507-1121543|1121507-1121543|1121507-1121543|1121507-1121543|1121507-1121543|1121563-1121599|1121563-1121599|1121563-1121599|1121563-1121599|1121563-1121599|1121563-1121599|1121563-1121599|1121563-1121599|1121563-1121599|1121563-1121599|1121563-1121599|1121563-1121599|1121563-1121599|1121563-1121599|1121563-1121599|1121563-1121599|1121563-1121599|1121619-1121655|1121619-1121655|1121619-1121655|1121619-1121655|1121619-1121655|1121619-1121655|1121619-1121655|1121619-1121655|1121619-1121655|1121619-1121655|1121619-1121655|1121619-1121655|1121619-1121655	NZ_AP014942.1_2297353-2297317|NZ_AP014942.1_1340100-1340136|NZ_AP014942.1_2487210-2487246|NZ_AP014942.1_2619675-2619711|NZ_AP014942.1_144840-144876|NZ_AP014942.1_790270-790234|NZ_AP014942.1_838904-838868|NZ_AP014942.1_903113-903149|NZ_AP014942.1_1613715-1613679|NZ_AP014942.1_1951704-1951668|NZ_AP014942.1_348042-348078|NZ_AP014942.1_802916-802880|NZ_AP014942.1_1019159-1019123|NZ_AP014942.1_1474141-1474177|NZ_AP014942.1_1613773-1613737|NZ_AP014942.1_1940953-1940917|NZ_AP014942.1_2331631-2331667|NZ_AP014942.1_1429174-1429138|NZ_AP014942.1_2297409-2297373|NZ_AP014942.1_2569121-2569085|NZ_AP014942.1_839174-839138|NZ_AP014942.1_839230-839194|NZ_AP014942.1_839286-839250|NZ_AP014942.1_1121675-1121711|NZ_AP014942.1_1205811-1205847|NZ_AP014942.1_1205867-1205903|NZ_AP014942.1_2461923-2461887|NZ_AP014942.1_749138-749174|NZ_AP014942.1_1429116-1429080|NZ_AP014942.1_1474197-1474233|NZ_AP014942.1_1942354-1942318|NZ_AP014942.1_1942413-1942377|NZ_AP014942.1_2331687-2331723|NZ_AP014942.1_2734252-2734216|NZ_AP014942.1_795763-795727|NZ_AP014942.1_1205755-1205791|NZ_AP014942.1_2569065-2569029|NZ_AP014942.1_2619732-2619768|NZ_AP014942.1_2734196-2734160|NZ_AP014942.1_1734069-1734105	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|169aa|up_7|NZ_AP014942.1_1115496_1116003_+,NA|62aa|up_4|NZ_AP014942.1_1117855_1118041_-,NA|78aa|up_3|NZ_AP014942.1_1118662_1118896_-,NA|49aa|up_1|NZ_AP014942.1_1121004_1121151_+,NA|75aa|up_0|NZ_AP014942.1_1121107_1121332_+,NA|76aa|down_5|NZ_AP014942.1_1128687_1128915_+	NA|110aa|up_9|NZ_AP014942.1_1113725_1114055_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|134aa|up_8|NZ_AP014942.1_1114424_1114826_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_7|NZ_AP014942.1_1115496_1116003_+	NA	NA|166aa|up_6|NZ_AP014942.1_1116261_1116759_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_5|NZ_AP014942.1_1116909_1117260_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_4|NZ_AP014942.1_1117855_1118041_-	NA	NA|78aa|up_3|NZ_AP014942.1_1118662_1118896_-	NA	NA|320aa|up_2|NZ_AP014942.1_1119372_1120332_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|up_1|NZ_AP014942.1_1121004_1121151_+	NA	NA|75aa|up_0|NZ_AP014942.1_1121107_1121332_+	NA	NA|242aa|down_0|NZ_AP014942.1_1122712_1123438_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_1|NZ_AP014942.1_1123532_1124258_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_2|NZ_AP014942.1_1124695_1125697_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_3|NZ_AP014942.1_1125719_1126652_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|519aa|down_4|NZ_AP014942.1_1126823_1128380_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_5|NZ_AP014942.1_1128687_1128915_+	NA	NA|316aa|down_6|NZ_AP014942.1_1129219_1130167_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_7|NZ_AP014942.1_1130415_1130604_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_8|NZ_AP014942.1_1131515_1131650_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein	NA|45aa|down_9|NZ_AP014942.1_1131706_1131841_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCF_001548295.1_ASM154829v1	NZ_AP014942	Staphylococcus aureus strain FDA209P	8	1734097-1734183	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	ATGCAAGTTGGGGTGGGGCCCCAACATAGA	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|33aa|down_4|NZ_AP014942.1_1738507_1738606_-	NA|423aa|up_9|NZ_AP014942.1_1716498_1717767_-	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|374aa|up_8|NZ_AP014942.1_1717815_1718937_-	PRK14035, PRK14035, citrate synthase; Provisional	NA|454aa|up_7|NZ_AP014942.1_1719285_1720647_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|586aa|up_6|NZ_AP014942.1_1722971_1724729_-	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|323aa|up_5|NZ_AP014942.1_1724750_1725719_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|315aa|up_4|NZ_AP014942.1_1725987_1726932_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|286aa|up_3|NZ_AP014942.1_1726931_1727789_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|410aa|up_2|NZ_AP014942.1_1727983_1729213_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|1066aa|up_1|NZ_AP014942.1_1729662_1732860_-	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|314aa|up_0|NZ_AP014942.1_1732880_1733822_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|433aa|down_0|NZ_AP014942.1_1734273_1735572_-	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|138aa|down_1|NZ_AP014942.1_1735776_1736190_+	pfam00582, Usp, Universal stress protein family	NA|230aa|down_2|NZ_AP014942.1_1736494_1737184_-	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|352aa|down_3|NZ_AP014942.1_1737358_1738414_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|33aa|down_4|NZ_AP014942.1_1738507_1738606_-	NA	NA|373aa|down_5|NZ_AP014942.1_1738729_1739848_-	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|167aa|down_6|NZ_AP014942.1_1739988_1740489_+	pfam00582, Usp, Universal stress protein family	NA|401aa|down_7|NZ_AP014942.1_1740734_1741937_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|316aa|down_8|NZ_AP014942.1_1742024_1742972_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|165aa|down_9|NZ_AP014942.1_1743094_1743589_-	PRK00522, tpx, thiol peroxidase
GCF_001548295.1_ASM154829v1	NZ_AP014942	Staphylococcus aureus strain FDA209P	9	2180496-2180652	1	PILER-CR	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	CCCCTACTTTTCAACTTTAGTTGTTAGGGGCTCTTATGCAG	41	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_AP014942.1_2175371_2175602_-,NA|364aa|up_0|NZ_AP014942.1_2179391_2180483_+,NA|31aa|down_0|NZ_AP014942.1_2180748_2180841_+,NA|26aa|down_1|NZ_AP014942.1_2181407_2181485_-	NA|237aa|up_9|NZ_AP014942.1_2170980_2171691_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_AP014942.1_2171811_2172255_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_AP014942.1_2172454_2172868_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_AP014942.1_2173324_2174698_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_AP014942.1_2175371_2175602_-	NA	NA|313aa|up_4|NZ_AP014942.1_2175632_2176571_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_AP014942.1_2177006_2177672_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_AP014942.1_2177823_2178144_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_AP014942.1_2178145_2179126_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_AP014942.1_2179391_2180483_+	NA	NA|31aa|down_0|NZ_AP014942.1_2180748_2180841_+	NA	NA|26aa|down_1|NZ_AP014942.1_2181407_2181485_-	NA	NA|379aa|down_2|NZ_AP014942.1_2182190_2183327_-	pfam02037, SAP, SAP domain	NA|286aa|down_3|NZ_AP014942.1_2184335_2185193_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_AP014942.1_2185260_2186043_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_AP014942.1_2186274_2188080_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_AP014942.1_2188760_2190299_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_AP014942.1_2190333_2192466_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_AP014942.1_2192477_2192912_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_AP014942.1_2192911_2194018_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
