assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001548635.1_ASM154863v1	NZ_CP014250	Listeria monocytogenes strain CFSAN010068, complete genome	1	535396-535980	1	CRT	no	RT	csa3,DinG,cas3,WYL,casR,RT,DEDDh	Unclear	GATGTAAGTAATTTTGATACNAGTTCAGTAACTNATATG	39	0	0	NA	NA	NA	7	7	Orphan	csa3,DinG,cas3,WYL,casR,RT,DEDDh	NA,NA|158aa|down_0|NZ_CP014250.1_538766_539240_+,NA|162aa|down_1|NZ_CP014250.1_539259_539745_+,NA|89aa|down_3|NZ_CP014250.1_540153_540420_+	NA|252aa|up_9|NZ_CP014250.1_519144_519900_-	pfam16160, DUF4866, Domain of unknown function (DUF4866)	NA|720aa|up_8|NZ_CP014250.1_520016_522176_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|383aa|up_7|NZ_CP014250.1_522172_523321_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|316aa|up_6|NZ_CP014250.1_523325_524273_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|532aa|up_5|NZ_CP014250.1_524428_526024_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|428aa|up_4|NZ_CP014250.1_526158_527442_+	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain	NA|367aa|up_3|NZ_CP014250.1_527442_528543_+	COG3535, COG3535, Uncharacterized conserved protein [Function unknown]	NA|517aa|up_2|NZ_CP014250.1_528535_530086_+	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|513aa|up_1|NZ_CP014250.1_530719_532258_+	pfam05043, Mga, Mga helix-turn-helix domain	NA|694aa|up_0|NZ_CP014250.1_532521_534603_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|158aa|down_0|NZ_CP014250.1_538766_539240_+	NA	NA|162aa|down_1|NZ_CP014250.1_539259_539745_+	NA	NA|102aa|down_2|NZ_CP014250.1_539772_540078_+	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|89aa|down_3|NZ_CP014250.1_540153_540420_+	NA	NA|187aa|down_4|NZ_CP014250.1_541532_542093_+	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region	NA|567aa|down_5|NZ_CP014250.1_542202_543903_+	COG4716, COG4716, Myosin-crossreactive antigen [Function unknown]	NA|368aa|down_6|NZ_CP014250.1_544053_545157_+	PRK14455, PRK14455, ribosomal RNA large subunit methyltransferase N; Provisional	NA|160aa|down_7|NZ_CP014250.1_545246_545726_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|122aa|down_8|NZ_CP014250.1_545883_546249_+	PRK13316, PRK13316, heme oxygenase IsdG	RT|588aa|down_9|NZ_CP014250.1_546522_548286_+	cd01646, RT_Bac_retron_I, RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons
GCF_001548635.1_ASM154863v1	NZ_CP014250	Listeria monocytogenes strain CFSAN010068, complete genome	2	537616-537873	1	CRISPRCasFinder	no	RT	csa3,DinG,cas3,WYL,casR,RT,DEDDh	Unclear	GATACCAGTTCCGTTACTAATATG	24	0	0	NA	NA	NA	3	3	Orphan	csa3,DinG,cas3,WYL,casR,RT,DEDDh	NA,NA|158aa|down_0|NZ_CP014250.1_538766_539240_+,NA|162aa|down_1|NZ_CP014250.1_539259_539745_+,NA|89aa|down_3|NZ_CP014250.1_540153_540420_+	NA|720aa|up_9|NZ_CP014250.1_520016_522176_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|383aa|up_8|NZ_CP014250.1_522172_523321_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|316aa|up_7|NZ_CP014250.1_523325_524273_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|532aa|up_6|NZ_CP014250.1_524428_526024_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|428aa|up_5|NZ_CP014250.1_526158_527442_+	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain	NA|367aa|up_4|NZ_CP014250.1_527442_528543_+	COG3535, COG3535, Uncharacterized conserved protein [Function unknown]	NA|517aa|up_3|NZ_CP014250.1_528535_530086_+	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|513aa|up_2|NZ_CP014250.1_530719_532258_+	pfam05043, Mga, Mga helix-turn-helix domain	NA|694aa|up_1|NZ_CP014250.1_532521_534603_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|690aa|up_0|NZ_CP014250.1_534738_536808_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|158aa|down_0|NZ_CP014250.1_538766_539240_+	NA	NA|162aa|down_1|NZ_CP014250.1_539259_539745_+	NA	NA|102aa|down_2|NZ_CP014250.1_539772_540078_+	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|89aa|down_3|NZ_CP014250.1_540153_540420_+	NA	NA|187aa|down_4|NZ_CP014250.1_541532_542093_+	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region	NA|567aa|down_5|NZ_CP014250.1_542202_543903_+	COG4716, COG4716, Myosin-crossreactive antigen [Function unknown]	NA|368aa|down_6|NZ_CP014250.1_544053_545157_+	PRK14455, PRK14455, ribosomal RNA large subunit methyltransferase N; Provisional	NA|160aa|down_7|NZ_CP014250.1_545246_545726_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|122aa|down_8|NZ_CP014250.1_545883_546249_+	PRK13316, PRK13316, heme oxygenase IsdG	RT|588aa|down_9|NZ_CP014250.1_546522_548286_+	cd01646, RT_Bac_retron_I, RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons
GCF_001548635.1_ASM154863v1	NZ_CP014251	Listeria monocytogenes strain CFSAN010068 plasmid pCFSAN010068_01, complete sequence	1	33647-33722	1	CRISPRCasFinder	no	csa3	csa3	Type I-A	TGAGAAGATCACCAATAAAACTTC	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,casR,RT,DEDDh	NA|107aa|up_8|NZ_CP014251.1_23550_23871_-,NA|80aa|up_7|NZ_CP014251.1_23870_24110_-,NA|92aa|up_3|NZ_CP014251.1_29555_29831_-,NA|330aa|up_2|NZ_CP014251.1_31644_32634_-,NA|126aa|down_0|NZ_CP014251.1_33783_34161_-,NA|165aa|down_1|NZ_CP014251.1_34179_34674_-,NA|100aa|down_2|NZ_CP014251.1_34658_34958_-,NA|93aa|down_3|NZ_CP014251.1_35041_35320_+,NA|115aa|down_8|NZ_CP014251.1_39464_39809_-,NA|133aa|down_9|NZ_CP014251.1_40521_40920_-	NA|85aa|up_9|NZ_CP014251.1_23046_23301_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|107aa|up_8|NZ_CP014251.1_23550_23871_-	NA	NA|80aa|up_7|NZ_CP014251.1_23870_24110_-	NA	NA|290aa|up_6|NZ_CP014251.1_24230_25100_+	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold	NA|455aa|up_5|NZ_CP014251.1_25345_26710_-	PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed	NA|227aa|up_4|NZ_CP014251.1_27333_28014_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|92aa|up_3|NZ_CP014251.1_29555_29831_-	NA	NA|330aa|up_2|NZ_CP014251.1_31644_32634_-	NA	NA|87aa|up_1|NZ_CP014251.1_32640_32901_-	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|190aa|up_0|NZ_CP014251.1_33010_33580_-	cd17493, toxin_TenpN, type III toxin-antitoxin system toxin TenpN and similar proteins	NA|126aa|down_0|NZ_CP014251.1_33783_34161_-	NA	NA|165aa|down_1|NZ_CP014251.1_34179_34674_-	NA	NA|100aa|down_2|NZ_CP014251.1_34658_34958_-	NA	NA|93aa|down_3|NZ_CP014251.1_35041_35320_+	NA	NA|201aa|down_4|NZ_CP014251.1_35491_36094_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|266aa|down_5|NZ_CP014251.1_36170_36968_-	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|409aa|down_6|NZ_CP014251.1_36936_38163_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|363aa|down_7|NZ_CP014251.1_38334_39423_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|115aa|down_8|NZ_CP014251.1_39464_39809_-	NA	NA|133aa|down_9|NZ_CP014251.1_40521_40920_-	NA
