The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP014064	Staphylococcus aureus strain FDAARGOS_159 chromosome, complete genome	2801196	119	7864	2801196	coat,terminase,capsid	Staphylococcus_phage(75.0%)	10	NA	NA
WP_001161492.1|119_461_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	97.3	5.4e-57
WP_000846290.1|472_1051_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	39.5	1.3e-29
WP_000448775.1|1068_1287_+|capsid	capsid morphogenesis B protein	capsid	NA	NA	NA	NA
WP_001836980.1|1337_1865_+|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	97.1	3.7e-89
WP_025174984.1|1996_2209_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	97.1	3.2e-31
WP_061047248.1|2205_2775_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	96.3	1.5e-99
WP_061047249.1|3972_4533_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001035625.1|4832_5387_-	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	76.1	5.2e-73
WP_061047250.1|6174_6975_+	staphylococcal enterotoxin type C2	NA	A0A097PAT7	Streptococcus_pyogenes_phage	43.8	6.1e-51
WP_000746597.1|7141_7864_-	staphylococcal enterotoxin type L	NA	A0A1X9H080	Staphylococcus_phage	34.9	1.6e-26
>prophage 2
NZ_CP014064	Staphylococcus aureus strain FDAARGOS_159 chromosome, complete genome	2801196	39666	87408	2801196	portal,head,holin,capsid,tail,plate,integrase,terminase	Staphylococcus_phage(72.86%)	73	35924:35940	64676:64692
35924:35940	attL	ATGCAAAAGAAAAAGCA	NA	NA	NA	NA
WP_001006450.1|39666_40917_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.8	1.1e-110
WP_001010508.1|40906_41371_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_001074405.1|41521_42919_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_033859694.1|42986_44036_-|integrase	site-specific integrase	integrase	A1KWY3	Staphylococcus_virus	99.7	4.5e-203
WP_000337827.1|44148_44328_+	hypothetical protein	NA	Q4ZBP0	Staphylococcus_phage	100.0	3.7e-25
WP_000392183.1|44307_45240_-	hypothetical protein	NA	A0EX19	Staphylococcus_virus	100.0	6.7e-174
WP_000525003.1|45271_45736_-	hypothetical protein	NA	A0A0N9BAX8	Staphylococcus_phage	98.1	4.6e-83
WP_000333630.1|45748_46063_-	helix-turn-helix transcriptional regulator	NA	A0A0N9BAW4	Staphylococcus_phage	100.0	9.8e-53
WP_001121116.1|46214_46451_+	helix-turn-helix transcriptional regulator	NA	A0A0N9BAY2	Staphylococcus_phage	100.0	1.5e-37
WP_000438352.1|46464_46644_+	hypothetical protein	NA	A0A0N9BAV3	Staphylococcus_phage	100.0	1.7e-25
WP_000394410.1|46744_47227_-	hypothetical protein	NA	A0A0N9BAX2	Staphylococcus_phage	100.0	1.1e-82
WP_015978301.1|47286_48036_+	phage antirepressor KilAC domain-containing protein	NA	Q4ZBF7	Staphylococcus_virus	100.0	1.5e-136
WP_000939498.1|48051_48195_+	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
WP_001556705.1|48204_48858_-	hypothetical protein	NA	Q4ZBF5	Staphylococcus_virus	100.0	4.5e-116
WP_000594789.1|48928_49150_+	hypothetical protein	NA	B2ZYU8	Staphylococcus_phage	100.0	8.7e-32
WP_000066017.1|49142_49304_+	DUF1270 domain-containing protein	NA	D2JGJ6	Staphylococcus_phage	100.0	4.3e-20
WP_000291090.1|49395_49656_+	DUF1108 family protein	NA	Q4ZDA1	Staphylococcus_virus	100.0	1.2e-43
WP_000815403.1|49665_49887_+	DUF2483 family protein	NA	A0A1X9H047	Staphylococcus_phage	100.0	1.2e-33
WP_000134097.1|49879_50668_+	ATP-binding protein	NA	Q4ZBM5	Staphylococcus_phage	100.0	2.6e-142
WP_000704705.1|50696_51248_+	single-stranded DNA-binding protein	NA	Q4ZBM4	Staphylococcus_phage	100.0	3.4e-101
WP_001199439.1|51260_51932_+	hypothetical protein	NA	A7TWM9	Staphylococcus_phage	100.0	2.0e-127
WP_000371250.1|52037_52895_-	DUF4393 domain-containing protein	NA	Q4ZBL8	Staphylococcus_phage	100.0	9.5e-159
WP_000190224.1|52959_53730_+	conserved phage C-terminal domain-containing protein	NA	W5R8N2	Staphylococcus_phage	100.0	1.4e-116
WP_000803065.1|53739_54519_+	ATP-binding protein	NA	W5RAN3	Staphylococcus_phage	100.0	1.2e-144
WP_000237153.1|54512_54674_+	hypothetical protein	NA	D2JGK6	Staphylococcus_phage	100.0	4.5e-22
WP_001123673.1|54686_54908_+	DUF3269 family protein	NA	A7TWN4	Staphylococcus_phage	100.0	1.3e-35
WP_001187236.1|55326_55512_+	DUF3113 family protein	NA	A0A068A236	Staphylococcus_phage	95.1	7.8e-26
WP_031807829.1|55512_55872_+	phage protein	NA	Q4ZBU0	Staphylococcus_virus	96.6	4.2e-60
WP_031807828.1|55871_56129_+	DUF3310 domain-containing protein	NA	B5WZM8	Staphylococcus_phage	98.8	1.3e-42
WP_000235326.1|56131_56332_+	hypothetical protein	NA	C5I650	Staphylococcus_phage	98.5	7.4e-30
WP_075339544.1|56340_56589_+	hypothetical protein	NA	A0A2I6PF06	Staphylococcus_phage	97.6	5.2e-41
WP_031807827.1|56603_57005_+	hypothetical protein	NA	A0A0H4IPW3	Staphylococcus_phage	81.3	7.1e-56
WP_031794818.1|57001_57196_+	hypothetical protein	NA	A0A0U2A067	Staphylococcus_phage	98.4	6.3e-26
WP_031807826.1|57192_57630_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031807825.1|57626_57911_+	hypothetical protein	NA	A1KX14	Staphylococcus_virus	96.8	4.4e-44
WP_061047252.1|57903_58152_+	DUF1024 family protein	NA	A0A2K9VBU0	Staphylococcus_phage	97.6	5.4e-38
WP_061047253.1|58144_58681_+	dUTP diphosphatase	NA	R4IG63	Staphylococcus_phage	99.4	4.6e-95
WP_033859700.1|58717_58924_+	DUF1381 domain-containing protein	NA	Q4ZCV6	Staphylococcus_virus	98.5	7.1e-20
WP_000595271.1|58920_59094_+	transcriptional activator RinB	NA	Q4ZAX6	Staphylococcus_virus	98.2	1.1e-21
WP_000989998.1|59094_59241_+	hypothetical protein	NA	A0A059T5A8	Staphylococcus_phage	100.0	2.2e-15
WP_000058632.1|59255_59675_+	transcriptional regulator	NA	I1W651	Staphylococcus_phage	100.0	8.1e-71
WP_001566315.1|59860_60301_+|terminase	terminase small subunit	terminase	I1W650	Staphylococcus_phage	99.3	2.4e-73
WP_000169944.1|60287_61565_+|terminase	PBSX family phage terminase large subunit	terminase	Q8SDU9	Staphylococcus_phage	100.0	3.0e-249
WP_061047254.1|61575_63111_+|portal	phage portal protein	portal	Q8SDU8	Staphylococcus_phage	99.2	1.4e-290
WP_061047255.1|63117_64113_+|capsid	minor capsid protein	capsid	S4V9L8	Staphylococcus_phage	99.1	3.8e-183
WP_000072204.1|64185_64356_+	hypothetical protein	NA	Q4ZDF2	Staphylococcus_virus	98.2	9.7e-23
WP_061047256.1|64464_65085_+	DUF4355 domain-containing protein	NA	B2ZYY4	Staphylococcus_phage	95.6	1.9e-71
64676:64692	attR	ATGCAAAAGAAAAAGCA	NA	NA	NA	NA
WP_000438503.1|65098_66073_+|capsid	phage major capsid protein	capsid	E0Y3L0	Staphylococcus_virus	99.4	6.3e-183
WP_061047257.1|66094_66382_+	hypothetical protein	NA	B7T0D3	Staphylococcus_virus	91.6	1.9e-42
WP_031869018.1|66390_66723_+|head,tail	phage head-tail connector protein	head,tail	B7T0D4	Staphylococcus_virus	95.5	6.7e-52
WP_061047258.1|66719_67022_+	hypothetical protein	NA	A4ZFB6	Staphylococcus_virus	97.0	3.3e-50
WP_001017815.1|67021_67369_+	HK97 gp10 family phage protein	NA	A0A0F6N3F5	Staphylococcus_phage	100.0	4.1e-60
WP_000188653.1|67380_67764_+	hypothetical protein	NA	Q8SDU1	Staphylococcus_phage	100.0	2.6e-68
WP_015977705.1|67782_68364_+|tail	phage major tail protein, TP901-1 family	tail	Q4ZDE5	Staphylococcus_virus	100.0	8.3e-106
WP_001100161.1|68425_68791_+|tail	tail assembly chaperone	tail	A0A0F6N4J9	Staphylococcus_phage	100.0	3.6e-59
WP_000105584.1|68820_69165_+	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
WP_061047259.1|69181_72646_+	hypothetical protein	NA	S4V989	Staphylococcus_phage	99.1	5.6e-266
WP_061047260.1|72658_73606_+|tail	phage tail family protein	tail	Q8SDT6	Staphylococcus_phage	99.7	4.7e-183
WP_000156406.1|73614_75516_+|tail	phage tail protein	tail	Q8SDT5	Staphylococcus_phage	100.0	0.0e+00
WP_061047261.1|75530_77441_+	hypothetical protein	NA	B2ZYZ7	Staphylococcus_phage	99.1	0.0e+00
WP_061047262.1|77440_79264_+|plate	phage baseplate upper protein	plate	Q9FZY8	Staphylococcus_virus	96.4	2.2e-282
WP_000705914.1|79263_79641_+	DUF2977 domain-containing protein	NA	W5R9M2	Staphylococcus_phage	99.2	3.4e-60
WP_001800921.1|79650_79824_+	XkdX family protein	NA	A0A059T7K6	Staphylococcus_phage	100.0	1.3e-27
WP_001588559.1|79864_80164_+	DUF2951 domain-containing protein	NA	A0EWU6	Staphylococcus_virus	98.0	3.8e-46
WP_061047263.1|80300_82199_+	glucosaminidase domain-containing protein	NA	Q8SDT1	Staphylococcus_phage	99.4	0.0e+00
WP_031764446.1|82211_83384_+|plate	BppU family phage baseplate upper protein	plate	Q8SDT0	Staphylococcus_phage	99.7	1.1e-197
WP_000398862.1|83389_83785_+	hypothetical protein	NA	Q4ZBW9	Staphylococcus_virus	100.0	1.6e-68
WP_000351119.1|83840_84116_+|holin	phage holin	holin	A0A0F6N3M0	Staphylococcus_phage	100.0	8.6e-45
WP_031764447.1|84102_85515_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A0F6N3N1	Staphylococcus_phage	99.6	6.4e-285
WP_001788502.1|85659_85812_+	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	3.1e-20
WP_000139423.1|85882_85993_+	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_001286805.1|85994_86180_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	100.0	2.7e-26
WP_000528632.1|86850_87408_+	hypothetical protein	NA	W5R8Q1	Staphylococcus_phage	100.0	5.7e-104
>prophage 3
NZ_CP014064	Staphylococcus aureus strain FDAARGOS_159 chromosome, complete genome	2801196	170283	222297	2801196	tRNA,bacteriocin,protease	Streptococcus_phage(33.33%)	52	NA	NA
WP_000448934.1|170283_171273_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|171566_171962_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217728.1|172332_173052_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959282.1|173172_174159_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082725.1|174206_176015_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	5.5e-47
WP_000896697.1|176474_177281_-|protease	protease adaptor protein YjbH	protease	NA	NA	NA	NA
WP_000214070.1|177303_177669_-	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000224619.1|177772_178366_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242103.1|178551_178899_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|178915_179551_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|179567_180377_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669923.1|180373_181228_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062407.1|181248_182634_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395153.1|182643_184488_+	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_031808216.1|184765_185536_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|185732_186818_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570690.1|187159_188728_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_001288675.1|188872_189631_+	esterase family protein	NA	NA	NA	NA	NA
WP_000600387.1|189824_190334_+	YjcG family protein	NA	NA	NA	NA	NA
WP_001154223.1|190446_191637_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258644.1|191614_192790_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340119.1|193222_194707_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001795833.1|194687_194948_+	YueH family protein	NA	NA	NA	NA	NA
WP_001049950.1|194947_196510_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	1.7e-36
WP_000928413.1|196811_197615_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001795272.1|197833_200158_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
WP_000021865.1|200174_201533_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414165.1|201671_203183_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|203669_204239_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|204448_204667_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668818.1|204747_205734_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|205932_206109_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033865.1|206123_206726_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_031763719.1|207641_207743_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001797239.1|207752_208025_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000870829.1|208068_210033_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000668627.1|210035_210356_+	YxeA family protein	NA	NA	NA	NA	NA
WP_000571167.1|210352_210994_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.0	1.7e-19
WP_001795266.1|211081_211372_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001792054.1|211512_211650_+	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
WP_000766009.1|211738_212095_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001081351.1|212582_213542_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001790177.1|213587_213719_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000867357.1|213782_213998_-	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	49.1	1.5e-07
WP_000620949.1|214162_214714_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000070966.1|214765_215704_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000190622.1|215885_217247_+	isochorismate synthase MenF	NA	NA	NA	NA	NA
WP_000526694.1|217233_218907_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_000150197.1|218893_219697_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000184945.1|219689_220511_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000284458.1|220748_221078_-	staphostatin B	NA	NA	NA	NA	NA
WP_001089094.1|221115_222297_-|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
>prophage 4
NZ_CP014064	Staphylococcus aureus strain FDAARGOS_159 chromosome, complete genome	2801196	241828	250301	2801196		Synechococcus_phage(33.33%)	9	NA	NA
WP_001813550.1|241828_242311_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.0	4.0e-21
WP_001010413.1|242297_243422_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|243425_244130_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|244129_244393_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666806.1|244394_245066_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032740.1|245058_247248_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
WP_000483720.1|247226_248711_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.9e-45
WP_000030811.1|248703_249732_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_000238669.1|249734_250301_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 5
NZ_CP014064	Staphylococcus aureus strain FDAARGOS_159 chromosome, complete genome	2801196	870256	879299	2801196	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|870256_870775_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000595011.1|870796_873070_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	8.1e-64
WP_000749795.1|873272_875552_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|875826_876087_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|876105_877245_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019178.1|877267_878293_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005768.1|878294_879299_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 6
NZ_CP014064	Staphylococcus aureus strain FDAARGOS_159 chromosome, complete genome	2801196	1002630	1061854	2801196	tRNA,transposase,protease	Staphylococcus_phage(95.35%)	55	NA	NA
WP_001050566.1|1002630_1009191_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.3	6.1e-306
WP_000836461.1|1009516_1009828_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	99.0	4.8e-52
WP_001557386.1|1009849_1012267_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
WP_001025067.1|1012554_1013736_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	7.3e-218
WP_000526539.1|1013845_1014799_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1014795_1015359_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1015481_1015883_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1016454_1017282_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1017284_1017404_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196362.1|1017515_1018517_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	2.6e-184
WP_001008549.1|1018638_1019103_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
WP_001159037.1|1019115_1020297_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	5.6e-226
WP_000493887.1|1020307_1020940_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	5.5e-111
WP_000077358.1|1020946_1021990_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	5.3e-196
WP_001261668.1|1022470_1023973_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
WP_000221177.1|1024495_1024810_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
WP_000989121.1|1024809_1026102_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_001032833.1|1026188_1027043_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1027318_1027543_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671057.1|1027741_1028212_+	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	8.8e-82
WP_001153742.1|1028324_1028768_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|1028754_1029198_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001168903.1|1029493_1030129_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1030568_1031282_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091442.1|1031541_1031844_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001557163.1|1032156_1033476_+|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_001200542.1|1033619_1033985_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623470.1|1033981_1034335_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	94.0	3.8e-21
WP_000453306.1|1036331_1037165_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	7.8e-158
WP_000366163.1|1037376_1038285_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000933820.1|1038406_1039603_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000109906.1|1039974_1041567_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_001822900.1|1041944_1042691_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.4e-142
WP_000672013.1|1042695_1043169_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_000718107.1|1043234_1043492_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778528.1|1043488_1044490_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.3	5.3e-185
WP_000348364.1|1044494_1045973_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	2.8e-283
WP_012840523.1|1046131_1046587_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	3.6e-80
WP_001795210.1|1046889_1047540_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	94.0	2.9e-51
WP_000070642.1|1047620_1048616_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.9	2.6e-67
WP_000669024.1|1048690_1049317_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	79.8	3.1e-74
WP_000627540.1|1049357_1049699_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	1.1e-54
WP_061047279.1|1049799_1050372_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	2.3e-23
WP_001801861.1|1051726_1051822_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001792025.1|1051944_1052046_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000072627.1|1053121_1054351_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	64.7	4.0e-134
WP_000028669.1|1054343_1055900_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	1.6e-289
WP_001791797.1|1056063_1056198_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038752.1|1056260_1056980_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	1.9e-131
WP_011447030.1|1057081_1057189_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038704.1|1057137_1057857_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_001038872.1|1057977_1058697_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	1.3e-129
WP_001039454.1|1058754_1059477_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	98.3	3.5e-130
WP_001039427.1|1059601_1060309_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	97.0	7.9e-127
WP_001092781.1|1061272_1061854_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	64.2	1.6e-53
>prophage 7
NZ_CP014064	Staphylococcus aureus strain FDAARGOS_159 chromosome, complete genome	2801196	1171098	1253193	2801196	portal,head,holin,capsid,tail,integrase,protease,terminase	Staphylococcus_phage(89.19%)	105	1220157:1220174	1244333:1244350
WP_000827746.1|1171098_1172265_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|1172295_1172622_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669862.1|1172913_1173087_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|1173067_1173670_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040866.1|1173940_1174762_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
WP_000284436.1|1174754_1176224_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	5.9e-108
WP_000897635.1|1176407_1177484_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177828.1|1177503_1178298_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|1178369_1178477_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323161.1|1178487_1180050_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275727.1|1180254_1181352_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	3.3e-47
WP_000149686.1|1181720_1182281_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|1182333_1183263_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001792184.1|1183455_1183629_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021210.1|1183680_1185060_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181315.1|1185179_1186208_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|1186477_1186879_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|1187451_1187625_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188043.1|1188075_1189116_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713072.1|1189172_1190015_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|1190011_1190569_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|1190628_1191153_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|1191273_1191837_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|1191902_1192643_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763043.1|1192642_1193515_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	36.0	1.0e-27
WP_000645727.1|1193511_1194192_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991306.1|1194192_1195089_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	5.0e-17
WP_000691584.1|1195085_1195466_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|1195723_1195900_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|1196142_1196241_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068542.1|1196440_1197727_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000671712.1|1198005_1198296_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_001558588.1|1198306_1199740_-	extracellular adherence protein Eap/Map	NA	NA	NA	NA	NA
WP_000669791.1|1200697_1200877_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	98.3	1.4e-24
WP_001791826.1|1201187_1201448_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|1201500_1201851_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000920038.1|1203346_1203838_-	staphylokinase	NA	A0A1W6JQ12	Staphylococcus_phage	99.4	4.7e-86
WP_000861038.1|1204028_1204784_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|1204795_1205050_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_031762631.1|1205101_1205209_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|1205261_1205438_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_025174055.1|1205640_1206414_-	staphylococcal enterotoxin type P	NA	A0A075M4C7	Staphylococcus_phage	99.6	4.0e-148
WP_000340977.1|1206834_1207209_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_001040255.1|1207264_1207552_-	hypothetical protein	NA	A0A075LZJ6	Staphylococcus_phage	100.0	5.8e-44
WP_000654329.1|1207598_1207751_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	98.0	1.2e-19
WP_000582169.1|1207740_1211526_-	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.3	0.0e+00
WP_000567408.1|1211541_1213026_-|tail	phage tail family protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
WP_001549167.1|1217607_1217745_-	hypothetical protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
WP_001096355.1|1217795_1218146_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_071621395.1|1218195_1218420_-	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_000268734.1|1218461_1219106_-|tail	phage tail protein	tail	A0EWZ9	Staphylococcus_phage	99.1	1.2e-118
WP_000565498.1|1219106_1219514_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114226.1|1219510_1219915_-	HK97 gp10 family phage protein	NA	G4KNQ5	Staphylococcus_phage	100.0	4.3e-69
WP_000755150.1|1219911_1220274_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
1220157:1220174	attL	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000150938.1|1220257_1220542_-|head,tail	phage head-tail connector protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	98.9	4.0e-45
WP_000238236.1|1220531_1220816_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154559.1|1220835_1221981_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000642727.1|1222004_1222742_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	99.6	4.0e-129
WP_000025274.1|1222725_1223913_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000625088.1|1223928_1225590_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|1225586_1225931_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988336.1|1226060_1226360_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000590122.1|1226591_1227008_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000265043.1|1227035_1227236_-	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
WP_000595264.1|1227235_1227385_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	98.0	8.2e-18
WP_000592207.1|1227381_1227768_-	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000195803.1|1227764_1227971_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_001282074.1|1227967_1228213_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_001066448.1|1228249_1228786_-	dUTP diphosphatase	NA	A0A1W6JQ21	Staphylococcus_phage	100.0	9.4e-96
WP_000714403.1|1228778_1228949_-	hypothetical protein	NA	A0A0H3U4U6	Staphylococcus_phage	100.0	8.2e-22
WP_001065097.1|1228935_1229190_-	DUF1024 family protein	NA	A0A0H3U469	Staphylococcus_phage	100.0	5.0e-39
WP_000131370.1|1229204_1229447_-	hypothetical protein	NA	Q4ZDP7	Staphylococcus_virus	95.0	2.1e-39
WP_000101288.1|1229450_1229819_-	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
WP_078065130.1|1229831_1230140_-	RusA family crossover junction endodeoxyribonuclease	NA	A0EWX6	Staphylococcus_phage	100.0	1.6e-52
WP_000338530.1|1230242_1230461_-	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_001818793.1|1230516_1231362_-	DnaD domain-containing protein	NA	A0A2I6PDG7	Staphylococcus_phage	99.3	7.0e-130
WP_000934760.1|1231391_1231862_-	single-stranded DNA-binding protein	NA	A0EWX3	Staphylococcus_phage	99.4	7.4e-81
WP_071665632.1|1231862_1232480_-	MBL fold metallo-hydrolase	NA	A0A0H3U2T4	Staphylococcus_phage	100.0	4.1e-87
WP_000138475.1|1232560_1233481_-	recombinase RecT	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_000700555.1|1233482_1235426_-	AAA family ATPase	NA	S4V9K6	Staphylococcus_phage	100.0	0.0e+00
WP_001205732.1|1235434_1235698_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291510.1|1235706_1235967_-	DUF1108 family protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
WP_000165371.1|1235971_1236274_-	DUF2482 family protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
WP_000066025.1|1236366_1236528_-	DUF1270 domain-containing protein	NA	D2JGJ6	Staphylococcus_phage	98.1	7.2e-20
WP_001120935.1|1236524_1236845_-	DUF771 domain-containing protein	NA	Q4ZDR7	Staphylococcus_virus	100.0	1.5e-56
WP_000993182.1|1236874_1237093_-	hypothetical protein	NA	Q4ZBN1	Staphylococcus_phage	97.2	2.1e-30
WP_000388066.1|1237123_1237318_-	hypothetical protein	NA	A0A1X9H0A2	Staphylococcus_phage	100.0	1.5e-19
WP_001148606.1|1237334_1238087_-	phage antirepressor KilAC domain-containing protein	NA	A0A1X9H0A0	Staphylococcus_phage	99.2	1.5e-139
WP_000128907.1|1238137_1238467_+	hypothetical protein	NA	M9NS98	Staphylococcus_phage	100.0	2.7e-53
WP_001025404.1|1238455_1238671_-	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000854072.1|1238686_1238950_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
WP_001801500.1|1238946_1239120_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001031454.1|1239082_1239796_+	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_000759682.1|1239811_1240744_+	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_000591749.1|1240749_1241091_+	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000705248.1|1241294_1241477_+	hypothetical protein	NA	M9NSW6	Staphylococcus_phage	100.0	4.1e-27
WP_000825947.1|1241576_1242041_+	hypothetical protein	NA	A0EWV3	Staphylococcus_phage	100.0	1.1e-28
WP_000857191.1|1242099_1243137_+|integrase	site-specific integrase	integrase	A0EWV2	Staphylococcus_phage	100.0	9.1e-180
WP_000595392.1|1244255_1245272_-	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.2	6.7e-26
1244333:1244350	attR	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000791411.1|1245293_1246349_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000206625.1|1246784_1248008_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_001045079.1|1248451_1249759_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000240642.1|1250298_1251915_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000917289.1|1251990_1252275_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000197635.1|1252449_1253193_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 8
NZ_CP014064	Staphylococcus aureus strain FDAARGOS_159 chromosome, complete genome	2801196	2363079	2410188	2801196	transposase	Staphylococcus_phage(57.14%)	46	NA	NA
WP_000159787.1|2363079_2363352_-|transposase	transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	50.6	1.3e-13
WP_000248844.1|2363612_2363765_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021613.1|2364296_2364656_-	DUF1304 domain-containing protein	NA	NA	NA	NA	NA
WP_001024371.1|2364674_2365520_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_000669014.1|2365991_2366672_+	superantigen-like protein SSL1	NA	NA	NA	NA	NA
WP_000782622.1|2366957_2367653_+	superantigen-like protein SSL2	NA	NA	NA	NA	NA
WP_001792090.1|2369132_2369270_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000705657.1|2369378_2370257_+	superantigen-like protein SSL4	NA	NA	NA	NA	NA
WP_000781349.1|2370620_2371325_+	superantigen-like protein SSL5	NA	NA	NA	NA	NA
WP_000769820.1|2371770_2372466_+	superantigen-like protein SSL7	NA	NA	NA	NA	NA
WP_000673034.1|2372804_2373503_+	superantigen-like protein SSL8	NA	NA	NA	NA	NA
WP_000778500.1|2373879_2374578_+	superantigen-like protein SSL9	NA	NA	NA	NA	NA
WP_000673051.1|2374943_2375627_+	superantigen-like protein SSL10	NA	NA	NA	NA	NA
WP_031762269.1|2375711_2375813_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000028669.1|2375890_2377447_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	1.6e-289
WP_000072629.1|2377439_2378663_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	63.5	4.9e-132
WP_000769160.1|2379045_2379729_+	superantigen-like protein SSL11	NA	NA	NA	NA	NA
WP_001208917.1|2379750_2381238_+	FKLRK protein	NA	NA	NA	NA	NA
WP_000669519.1|2381346_2381655_-	myeloperoxidase inhibitor SPIN	NA	NA	NA	NA	NA
WP_001802013.1|2382021_2382795_+	tandem-type lipoprotein Lpl1	NA	NA	NA	NA	NA
WP_000540879.1|2382825_2383620_+	tandem-type lipoprotein	NA	NA	NA	NA	NA
WP_000542365.1|2383667_2384453_+	tandem-type lipoprotein	NA	NA	NA	NA	NA
WP_001557593.1|2384497_2385259_+	tandem-type lipoprotein	NA	NA	NA	NA	NA
WP_001557594.1|2385319_2386105_+	tandem-type lipoprotein	NA	NA	NA	NA	NA
WP_001557596.1|2386123_2386906_+	tandem-type lipoprotein	NA	NA	NA	NA	NA
WP_001802015.1|2386965_2387757_+	tandem-type lipoprotein	NA	NA	NA	NA	NA
WP_000540323.1|2387808_2388609_+	tandem-type lipoprotein	NA	NA	NA	NA	NA
WP_001802016.1|2389592_2390405_+	tandem-type lipoprotein	NA	NA	NA	NA	NA
WP_001105987.1|2390845_2391520_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.6	6.8e-128
WP_000162894.1|2392430_2393288_+	YitT family protein	NA	M1Q1P6	Streptococcus_phage	32.6	4.2e-29
WP_000635275.1|2393437_2394049_-	recombinase family protein	NA	M9Q1K0	Clostridium_phage	32.8	8.9e-18
WP_000196697.1|2394534_2395434_-	Mph(C) family macrolide 2'-phosphotransferase	NA	NA	NA	NA	NA
WP_000438874.1|2395532_2396999_-	ABC-F type ribosomal protection protein Msr(A)	NA	A0A2I4R674	Erysipelothrix_phage	37.7	6.6e-67
WP_001105960.1|2397472_2398147_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	97.3	1.7e-126
WP_000941203.1|2398657_2399278_-	LysE family transporter	NA	NA	NA	NA	NA
WP_000053810.1|2399282_2400254_-	fatty acid desaturase family protein	NA	NA	NA	NA	NA
WP_000526300.1|2400352_2401765_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_001105960.1|2401956_2402631_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	97.3	1.7e-126
WP_000866106.1|2402770_2403445_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000793446.1|2404438_2405368_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	42.2	1.0e-41
WP_000369394.1|2405360_2406098_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000505741.1|2406111_2406315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001105960.1|2406344_2407019_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	97.3	1.7e-126
WP_000627289.1|2407791_2408322_+	streptothricin N-acetyltransferase Sat4	NA	A0A1B0RXL7	Streptococcus_phage	97.8	1.3e-89
WP_001096887.1|2408414_2409209_+	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
WP_001105987.1|2409513_2410188_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.6	6.8e-128
>prophage 9
NZ_CP014064	Staphylococcus aureus strain FDAARGOS_159 chromosome, complete genome	2801196	2704703	2712524	2801196		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|2704703_2705759_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|2705758_2706445_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|2706419_2706893_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093562.1|2707235_2707676_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000604990.1|2707955_2708540_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|2708638_2709352_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|2709355_2709775_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|2709776_2710445_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|2710795_2711389_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217796.1|2711372_2712524_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.7	6.0e-23
>prophage 10
NZ_CP014064	Staphylococcus aureus strain FDAARGOS_159 chromosome, complete genome	2801196	2728556	2739192	2801196		uncultured_Caudovirales_phage(62.5%)	10	NA	NA
WP_000193751.1|2728556_2730062_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|2730402_2730903_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068501.1|2730922_2731789_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|2732589_2732988_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855514.1|2732950_2735056_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|2735173_2736145_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|2736325_2736481_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|2736519_2737491_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|2737477_2738434_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616840.1|2738430_2739192_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
>prophage 11
NZ_CP014064	Staphylococcus aureus strain FDAARGOS_159 chromosome, complete genome	2801196	2790149	2800969	2801196	integrase	Staphylococcus_phage(80.0%)	14	2781218:2781233	2800295:2800310
2781218:2781233	attL	GGTATTAAGAATAAAT	NA	NA	NA	NA
WP_001050049.1|2790149_2792507_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.5	2.8e-91
WP_001085184.1|2792528_2792993_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	98.1	3.6e-80
WP_061047307.1|2793555_2794662_-|integrase	site-specific integrase	integrase	H0UST3	Bacillus_phage	44.2	3.1e-77
WP_072474260.1|2794667_2795315_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_061047308.1|2795472_2795679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000164237.1|2795714_2795942_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000784892.1|2795938_2796112_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001231376.1|2796078_2796282_+	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
WP_061047309.1|2796283_2796667_+	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.9	2.6e-63
WP_061047310.1|2796667_2796985_+	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	52.3	1.2e-18
WP_061047311.1|2797048_2797918_+	primase C-terminal domain-containing protein	NA	Q4ZE74	Staphylococcus_phage	92.0	8.2e-158
WP_061047312.1|2797931_2799641_+	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	92.4	3.2e-299
WP_061047313.1|2799950_2800331_+	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	97.6	1.7e-67
2800295:2800310	attR	GGTATTAAGAATAAAT	NA	NA	NA	NA
WP_001019765.1|2800327_2800969_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	93.0	7.2e-111
>prophage 1
NZ_CP014063	Staphylococcus aureus strain FDAARGOS_159 plasmid unnamed, complete sequence	37980	0	15431	37980		Salmonella_phage(25.0%)	14	NA	NA
WP_012816524.1|1250_2021_+	DUF536 domain-containing protein	NA	NA	NA	NA	NA
WP_012211166.1|2219_2738_-	type 1 glutamine amidotransferase	NA	NA	NA	NA	NA
WP_000776029.1|2826_3462_-	3-hexulose-6-phosphate synthase	NA	NA	NA	NA	NA
WP_012211165.1|3564_3915_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001791613.1|4246_4339_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_012211164.1|4510_5482_-	oxidoreductase	NA	NA	NA	NA	NA
WP_012211163.1|5605_6025_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000733271.1|6525_7371_-	penicillin-hydrolyzing class A beta-lactamase BlaZ	NA	A0A1B0VBP7	Salmonella_phage	34.1	9.8e-31
WP_001096396.1|7477_9235_+	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA	NA
WP_001284653.1|9224_9605_+	penicillinase repressor BlaI	NA	NA	NA	NA	NA
WP_000690623.1|9868_10447_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.7	2.4e-41
WP_012816525.1|10573_11185_+	recombinase family protein	NA	I1ZBD6	Salisaeta_icosahedral_phage	29.5	6.4e-16
WP_012816526.1|11455_13678_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_015056131.1|13670_15431_-	site-specific DNA-methyltransferase	NA	A0A2K5B255	Erysipelothrix_phage	29.2	2.4e-31
>prophage 2
NZ_CP014063	Staphylococcus aureus strain FDAARGOS_159 plasmid unnamed, complete sequence	37980	19910	22724	37980	transposase,integrase	Streptococcus_phage(50.0%)	6	11349:11370	30188:30209
11349:11370	attL	GGTTCTGTTGCAAAGTTAGAAA	NA	NA	NA	NA
WP_000119690.1|19910_20258_+	helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	36.8	4.9e-13
WP_001199897.1|20448_20568_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061047247.1|20607_21237_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	88.5	1.5e-105
WP_078066216.1|21343_21754_+|integrase	tyrosine-type recombinase/integrase	integrase	A3F636	Streptococcus_phage	51.4	2.9e-28
WP_012816530.1|21874_22246_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012211148.1|22523_22724_+	helix-turn-helix transcriptional regulator	NA	A0A142LP09	Marinitoga_camini_virus	43.5	6.7e-07
30188:30209	attR	TTTCTAACTTTGCAACAGAACC	NA	NA	NA	NA
>prophage 3
NZ_CP014063	Staphylococcus aureus strain FDAARGOS_159 plasmid unnamed, complete sequence	37980	26278	34940	37980	transposase,protease	Staphylococcus_phage(80.0%)	8	NA	NA
WP_012211140.1|26278_28438_+	peptidase domain-containing ABC transporter	NA	W8CYL7	Bacillus_phage	25.7	9.8e-43
WP_012211139.1|28439_29435_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_001105942.1|29476_30151_-|transposase	IS6-like element ISSau6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	88.4	1.3e-113
WP_012211138.1|30410_30794_-|protease	trypsin-like serine protease	protease	NA	NA	NA	NA
WP_012211137.1|30909_31653_+	epidermal cell differentiation inhibitor	NA	NA	NA	NA	NA
WP_012211134.1|31994_32669_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	87.5	1.5e-114
WP_012816522.1|32776_33529_-	exotoxin	NA	A0A075M4C7	Staphylococcus_phage	58.3	1.3e-74
WP_012211134.1|34265_34940_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	87.5	1.5e-114
