assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001559055.1_ASM155905v2	NZ_CP014013	Bordetella bronchiseptica strain FDAARGOS_176 chromosome, complete genome	1	1332533-1332617	1	CRISPRCasFinder	no	csa3	csa3,DEDDh,DinG,cas3	Type I-A	GGTGCCTGTCCCCGCGGGGACAG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA,NA	NA|169aa|up_9|NZ_CP014013.1_1322643_1323150_-	cd08896, SRPBCC_CalC_Aha1-like_3, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins	csa3|113aa|up_8|NZ_CP014013.1_1323146_1323485_-	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|840aa|up_7|NZ_CP014013.1_1323922_1326442_+	PRK10833, PRK10833, putative assembly protein; Provisional	NA|129aa|up_6|NZ_CP014013.1_1326438_1326825_+	pfam03476, MOSC_N, MOSC N-terminal beta barrel domain	NA|406aa|up_5|NZ_CP014013.1_1326832_1328050_-	pfam03594, BenE, Benzoate membrane transport protein	NA|84aa|up_4|NZ_CP014013.1_1328046_1328298_-	cd10549, MtMvhB_like, Uncharacterized polyferredoxin-like protein	NA|170aa|up_3|NZ_CP014013.1_1328352_1328862_-	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional	NA|207aa|up_2|NZ_CP014013.1_1328882_1329503_-	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair]	NA|400aa|up_1|NZ_CP014013.1_1329578_1330778_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|533aa|up_0|NZ_CP014013.1_1330824_1332423_-	cd07756, CYTH-like_Pase_CHAD, Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain	NA|274aa|down_0|NZ_CP014013.1_1332663_1333485_-	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|297aa|down_1|NZ_CP014013.1_1333481_1334372_-	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|257aa|down_2|NZ_CP014013.1_1334368_1335139_-	cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system	NA|336aa|down_3|NZ_CP014013.1_1335141_1336149_-	cd13573, PBP2_PnhD_3, Substrate binding domain of uncharacterized ABC-type phosphonate-like transporter; contains the type 2 periplasmic binding fold	NA|276aa|down_4|NZ_CP014013.1_1336297_1337125_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|266aa|down_5|NZ_CP014013.1_1337130_1337928_-	TIGR01484, Putative_mannosyl-3-phosphoglycerate_phosphatase, HAD-superfamily hydrolase, subfamily IIB	NA|392aa|down_6|NZ_CP014013.1_1338073_1339249_+	PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA|176aa|down_7|NZ_CP014013.1_1339262_1339790_+	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|167aa|down_8|NZ_CP014013.1_1339761_1340262_+	PRK00202, nusB, transcription antitermination factor NusB	NA|333aa|down_9|NZ_CP014013.1_1340319_1341318_+	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional
GCF_001559055.1_ASM155905v2	NZ_CP014013	Bordetella bronchiseptica strain FDAARGOS_176 chromosome, complete genome	2	3495526-3495684	2	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3	Orphan	CACCGGCCGGGGCGGAAGCGGCTGAGCCGTTTCGACCTTCGGCCGCGGCAC	51	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA,NA	NA|164aa|up_9|NZ_CP014013.1_3482539_3483031_+	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component	NA|433aa|up_8|NZ_CP014013.1_3483023_3484322_+	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit	NA|325aa|up_7|NZ_CP014013.1_3484585_3485560_+	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold	NA|167aa|up_6|NZ_CP014013.1_3485566_3486067_+	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component	NA|434aa|up_5|NZ_CP014013.1_3486059_3487361_+	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit	NA|584aa|up_4|NZ_CP014013.1_3487386_3489138_-	pfam03865, ShlB, Haemolysin secretion/activation protein ShlB/FhaC/HecB	NA|366aa|up_3|NZ_CP014013.1_3489130_3490228_-	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|874aa|up_2|NZ_CP014013.1_3490241_3492863_-	pfam00577, Usher, Outer membrane usher protein	NA|245aa|up_1|NZ_CP014013.1_3492925_3493660_-	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|202aa|up_0|NZ_CP014013.1_3493909_3494515_-	pfam16970, FimA, Type-1 fimbrial protein, A	NA|210aa|down_0|NZ_CP014013.1_3506409_3507039_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|1239aa|down_1|NZ_CP014013.1_3507047_3510764_+	PRK09959, PRK09959, acid-sensing system histidine kinase EvgS	NA|292aa|down_2|NZ_CP014013.1_3510810_3511686_-	pfam00563, EAL, EAL domain	NA|265aa|down_3|NZ_CP014013.1_3511819_3512614_-	PRK05463, PRK05463, putative hydro-lyase	NA|450aa|down_4|NZ_CP014013.1_3512671_3514021_-	PRK07056, PRK07056, amidase; Provisional	NA|229aa|down_5|NZ_CP014013.1_3514081_3514768_-	pfam11010, DUF2848, Protein of unknown function (DUF2848)	NA|428aa|down_6|NZ_CP014013.1_3514823_3516107_-	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]	NA|207aa|down_7|NZ_CP014013.1_3516103_3516724_-	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component	NA|350aa|down_8|NZ_CP014013.1_3516833_3517883_-	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold	NA|303aa|down_9|NZ_CP014013.1_3518225_3519134_-	COG0583, LysR, Transcriptional regulator [Transcription]
GCF_001559055.1_ASM155905v2	NZ_CP014013	Bordetella bronchiseptica strain FDAARGOS_176 chromosome, complete genome	3	3734607-3734703	3	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3	Orphan	GTGCCTGTCCCGGCGGGGACAGGCACCC	28	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA|122aa|up_2|NZ_CP014013.1_3731757_3732123_-,NA	NA|526aa|up_9|NZ_CP014013.1_3722798_3724376_-	TIGR02520, putative_Type_IV_pilus_protein, type IVB pilus formation outer membrane protein, R64 PilN family	NA|254aa|up_8|NZ_CP014013.1_3724372_3725134_-	cd06911, VirB9_CagX_TrbG, VirB9/CagX/TrbG, a component of the type IV secretion system	NA|452aa|up_7|NZ_CP014013.1_3725311_3726667_-	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|545aa|up_6|NZ_CP014013.1_3726663_3728298_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|277aa|up_5|NZ_CP014013.1_3728290_3729121_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|315aa|up_4|NZ_CP014013.1_3729138_3730083_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|525aa|up_3|NZ_CP014013.1_3730135_3731710_-	cd08502, PBP2_NikA_DppA_OppA_like_16, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|122aa|up_2|NZ_CP014013.1_3731757_3732123_-	NA	NA|459aa|up_1|NZ_CP014013.1_3732109_3733486_-	pfam07287, AtuA, Acyclic terpene utilisation family protein AtuA	NA|317aa|up_0|NZ_CP014013.1_3733582_3734533_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|446aa|down_0|NZ_CP014013.1_3734802_3736140_-	PRK10974, PRK10974, sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA|419aa|down_1|NZ_CP014013.1_3736144_3737401_-	PRK00711, PRK00711, D-amino acid dehydrogenase	NA|349aa|down_2|NZ_CP014013.1_3737596_3738643_-	PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated	NA|123aa|down_3|NZ_CP014013.1_3738700_3739069_-	PRK05449, PRK05449, aspartate alpha-decarboxylase; Provisional	NA|291aa|down_4|NZ_CP014013.1_3739199_3740072_-	COG3217, COG3217, Uncharacterized Fe-S protein [General function prediction only]	NA|301aa|down_5|NZ_CP014013.1_3740148_3741051_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|352aa|down_6|NZ_CP014013.1_3741055_3742111_-	TIGR00557, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase	NA|406aa|down_7|NZ_CP014013.1_3742107_3743325_-	pfam07005, DUF1537, Putative sugar-binding N-terminal domain	NA|341aa|down_8|NZ_CP014013.1_3743325_3744348_-	PRK05274, PRK05274, 2-keto-3-deoxygluconate permease; Provisional	NA|309aa|down_9|NZ_CP014013.1_3744597_3745524_-	TIGR02408, putative_L-proline_4-hydroxylase, ectoine hydroxylase
GCF_001559055.1_ASM155905v2	NZ_CP014013	Bordetella bronchiseptica strain FDAARGOS_176 chromosome, complete genome	4	3875179-3875308	4	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3	Orphan	TGCCCCCCGAGGGGGCTTTTTTGCCTTGGGGCGGCCCGGCGGCAAA	46	1	1	3875225-3875262	NZ_CP014013.1_1771116-1771079	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA|237aa|up_0|NZ_CP014013.1_3874226_3874937_-,NA	NA|221aa|up_9|NZ_CP014013.1_3865015_3865678_-	PRK14487, PRK14487, cbb3-type cytochrome c oxidase subunit II; Provisional	NA|496aa|up_8|NZ_CP014013.1_3865688_3867176_-	PRK14488, PRK14488, cbb3-type cytochrome c oxidase subunit I; Provisional	NA|48aa|up_7|NZ_CP014013.1_3867300_3867444_-	pfam03597, FixS, Cytochrome oxidase maturation protein cbb3-type	NA|325aa|up_6|NZ_CP014013.1_3867440_3868415_-	cd02079, P-type_ATPase_HM, P-type heavy metal-transporting ATPase	NA|425aa|up_5|NZ_CP014013.1_3868479_3869754_-	PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional	NA|398aa|up_4|NZ_CP014013.1_3869857_3871051_+	TIGR00858, Putative_8-amino-7-oxononanoate_synthase, 8-amino-7-oxononanoate synthase	NA|479aa|up_3|NZ_CP014013.1_3871696_3873133_+	pfam13500, AAA_26, AAA domain	NA|120aa|up_2|NZ_CP014013.1_3873120_3873480_+	pfam03788, LrgA, LrgA family	NA|248aa|up_1|NZ_CP014013.1_3873472_3874216_+	pfam04172, LrgB, LrgB-like family	NA|237aa|up_0|NZ_CP014013.1_3874226_3874937_-	NA	NA|441aa|down_0|NZ_CP014013.1_3875396_3876719_-	PRK15063, PRK15063, isocitrate lyase; Provisional	NA|274aa|down_1|NZ_CP014013.1_3877037_3877859_+	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional	NA|418aa|down_2|NZ_CP014013.1_3877865_3879119_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|191aa|down_3|NZ_CP014013.1_3879282_3879855_-	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|610aa|down_4|NZ_CP014013.1_3879894_3881724_-	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|354aa|down_5|NZ_CP014013.1_3881686_3882748_-	PRK05337, PRK05337, beta-hexosaminidase; Provisional	NA|154aa|down_6|NZ_CP014013.1_3882786_3883248_-	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|249aa|down_7|NZ_CP014013.1_3883332_3884079_-	PRK05265, PRK05265, pyridoxine 5'-phosphate synthase; Provisional	NA|500aa|down_8|NZ_CP014013.1_3884075_3885575_-	PRK09837, PRK09837, Cu(I)/Ag(I) efflux RND transporter outer membrane protein	NA|1077aa|down_9|NZ_CP014013.1_3885571_3888802_-	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
GCF_001559055.1_ASM155905v2	NZ_CP014013	Bordetella bronchiseptica strain FDAARGOS_176 chromosome, complete genome	5	4544863-4544966	5	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3	Orphan	GCGCAGCGAGCGCAGCGTGGGGGC	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA,NA	NA|242aa|up_9|NZ_CP014013.1_4531528_4532254_+	PRK01305, PRK01305, arginyl-tRNA-protein transferase; Provisional	NA|350aa|up_8|NZ_CP014013.1_4532294_4533344_+	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase	NA|193aa|up_7|NZ_CP014013.1_4533491_4534070_-	TIGR01841, hypothetical_protein, phasin family protein	NA|326aa|up_6|NZ_CP014013.1_4534456_4535434_+	cd13576, PBP2_BugD_Asp, Aspartic acid transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold	NA|1465aa|up_5|NZ_CP014013.1_4535527_4539922_-	pfam05785, CNF1, Rho-activating domain of cytotoxic necrotizing factor	NA|283aa|up_4|NZ_CP014013.1_4540122_4540971_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|271aa|up_3|NZ_CP014013.1_4541128_4541941_-	COG1058, CinA, Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]	NA|267aa|up_2|NZ_CP014013.1_4541993_4542794_-	pfam07264, EI24, Etoposide-induced protein 2	NA|128aa|up_1|NZ_CP014013.1_4542855_4543239_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|453aa|up_0|NZ_CP014013.1_4543250_4544609_-	PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional	NA|110aa|down_0|NZ_CP014013.1_4544976_4545306_-	COG4392, COG4392, Predicted membrane protein [Function unknown]	NA|250aa|down_1|NZ_CP014013.1_4545308_4546058_-	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|307aa|down_2|NZ_CP014013.1_4546240_4547161_+	PRK06606, PRK06606, branched-chain amino acid transaminase	NA|71aa|down_3|NZ_CP014013.1_4547207_4547420_+	COG4391, COG4391, Uncharacterized protein conserved in bacteria [Function unknown]	NA|141aa|down_4|NZ_CP014013.1_4547442_4547865_+	pfam13474, SnoaL_3, SnoaL-like domain	NA|367aa|down_5|NZ_CP014013.1_4547881_4548982_+	COG0429, COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]	NA|506aa|down_6|NZ_CP014013.1_4549078_4550596_-	COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]	NA|280aa|down_7|NZ_CP014013.1_4550671_4551511_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|291aa|down_8|NZ_CP014013.1_4551532_4552405_-	pfam09678, Caa3_CtaG, Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG)	NA|365aa|down_9|NZ_CP014013.1_4552495_4553590_-	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane
GCF_001559055.1_ASM155905v2	NZ_CP014013	Bordetella bronchiseptica strain FDAARGOS_176 chromosome, complete genome	6	4846793-4846886	6	CRISPRCasFinder	no	DEDDh	csa3,DEDDh,DinG,cas3	Unclear	GTGCCTGTCCCCGCCGGGACAGGCAC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA,NA	NA|398aa|up_9|NZ_CP014013.1_4835213_4836407_-	PRK06954, PRK06954, acetyl-CoA C-acetyltransferase	NA|343aa|up_8|NZ_CP014013.1_4836472_4837501_-	pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal domain	NA|391aa|up_7|NZ_CP014013.1_4837527_4838700_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|326aa|up_6|NZ_CP014013.1_4838825_4839803_+	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold	NA|324aa|up_5|NZ_CP014013.1_4839813_4840785_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|262aa|up_4|NZ_CP014013.1_4840851_4841637_-	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein	NA|411aa|up_3|NZ_CP014013.1_4841629_4842862_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|252aa|up_2|NZ_CP014013.1_4843057_4843813_-	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|173aa|up_1|NZ_CP014013.1_4843923_4844442_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|708aa|up_0|NZ_CP014013.1_4844438_4846562_-	PRK00007, PRK00007, elongation factor G; Reviewed	NA|157aa|down_0|NZ_CP014013.1_4846972_4847443_-	pfam00582, Usp, Universal stress protein family	NA|115aa|down_1|NZ_CP014013.1_4847531_4847876_-	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|482aa|down_2|NZ_CP014013.1_4847975_4849421_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|305aa|down_3|NZ_CP014013.1_4849564_4850479_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|220aa|down_4|NZ_CP014013.1_4850475_4851135_+	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|308aa|down_5|NZ_CP014013.1_4851222_4852146_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|152aa|down_6|NZ_CP014013.1_4852151_4852607_-	COG4125, COG4125, Predicted membrane protein [Function unknown]	NA|334aa|down_7|NZ_CP014013.1_4852603_4853605_-	cd10807, YdjC_like_3, uncharacterized YdjC-like family proteins from bacteria	NA|132aa|down_8|NZ_CP014013.1_4853539_4853935_+	pfam04138, GtrA, GtrA-like protein	NA|540aa|down_9|NZ_CP014013.1_4853894_4855514_-	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]
GCF_001559055.1_ASM155905v2	NZ_CP014013	Bordetella bronchiseptica strain FDAARGOS_176 chromosome, complete genome	7	5125454-5125537	7	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3	Orphan	GGTGCCTGTCCCCGCGGGGACAG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA,NA	NA|429aa|up_9|NZ_CP014013.1_5117460_5118747_-	pfam00034, Cytochrom_C, Cytochrome c	NA|205aa|up_8|NZ_CP014013.1_5118757_5119372_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|291aa|up_7|NZ_CP014013.1_5119681_5120554_+	PRK05416, PRK05416, RNase adapter RapZ	NA|317aa|up_6|NZ_CP014013.1_5120550_5121501_+	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|191aa|up_5|NZ_CP014013.1_5121497_5122070_-	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|313aa|up_4|NZ_CP014013.1_5122066_5123005_-	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|178aa|up_3|NZ_CP014013.1_5123071_5123605_+	PRK14685, PRK14685, hypothetical protein; Provisional	NA|198aa|up_2|NZ_CP014013.1_5123613_5124207_+	PRK13936, PRK13936, phosphoheptose isomerase; Provisional	NA|248aa|up_1|NZ_CP014013.1_5124203_5124947_+	PRK11023, PRK11023, divisome-associated lipoprotein YraP	NA|164aa|up_0|NZ_CP014013.1_5124943_5125435_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|263aa|down_0|NZ_CP014013.1_5125591_5126380_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|301aa|down_1|NZ_CP014013.1_5126641_5127544_+	PRK00942, PRK00942, acetylglutamate kinase; Provisional	NA|249aa|down_2|NZ_CP014013.1_5127543_5128290_+	cd02604, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to Saccharomyces cerevisiae Phm8p and Sdt1p	NA|192aa|down_3|NZ_CP014013.1_5128339_5128915_+	PRK09480, slmA, division inhibitor protein; Provisional	NA|498aa|down_4|NZ_CP014013.1_5129127_5130621_+	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|352aa|down_5|NZ_CP014013.1_5130631_5131687_+	pfam02615, Ldh_2, Malate/L-lactate dehydrogenase	NA|379aa|down_6|NZ_CP014013.1_5131712_5132849_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|651aa|down_7|NZ_CP014013.1_5132845_5134798_-	TIGR03423, pbp2_mrdA, penicillin-binding protein 2	NA|188aa|down_8|NZ_CP014013.1_5134811_5135375_-	TIGR03426, shape_MreD, rod shape-determining protein MreD	NA|295aa|down_9|NZ_CP014013.1_5135361_5136246_-	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional
GCF_001559055.1_ASM155905v2	NZ_CP014013	Bordetella bronchiseptica strain FDAARGOS_176 chromosome, complete genome	8	5208554-5208634	8	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3	Orphan	GTGCCTGTCCCCGCGGGGACAGGCACCT	28	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA|79aa|up_8|NZ_CP014013.1_5199232_5199469_+,NA	NA|287aa|up_9|NZ_CP014013.1_5198244_5199105_+	cd01171, YXKO-related, B	NA|79aa|up_8|NZ_CP014013.1_5199232_5199469_+	NA	NA|543aa|up_7|NZ_CP014013.1_5199765_5201394_+	cd08498, PBP2_NikA_DppA_OppA_like_2, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|323aa|up_6|NZ_CP014013.1_5201517_5202486_+	cd06910, M14_ASTE_ASPA-like, Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA)-like; uncharacterized subgroup	NA|326aa|up_5|NZ_CP014013.1_5202544_5203522_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|307aa|up_4|NZ_CP014013.1_5203529_5204450_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|328aa|up_3|NZ_CP014013.1_5204446_5205430_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|337aa|up_2|NZ_CP014013.1_5205426_5206437_+	COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]	NA|302aa|up_1|NZ_CP014013.1_5206439_5207345_+	COG3509, LpqC, Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|378aa|up_0|NZ_CP014013.1_5207388_5208522_+	cd03885, M20_CPDG2, M20 Peptidase Glutamate carboxypeptidase, a periplasmic enzyme	NA|690aa|down_0|NZ_CP014013.1_5208652_5210722_-	TIGR01074, ATP-dependent_DNA_helicase_Rep, ATP-dependent DNA helicase Rep	NA|701aa|down_1|NZ_CP014013.1_5210764_5212867_-	PRK05580, PRK05580, primosome assembly protein PriA; Validated	NA|359aa|down_2|NZ_CP014013.1_5213173_5214250_-	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated	NA|294aa|down_3|NZ_CP014013.1_5214325_5215207_-	PRK15115, PRK15115, response regulator GlrR; Provisional	NA|141aa|down_4|NZ_CP014013.1_5215389_5215812_-	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated	NA|467aa|down_5|NZ_CP014013.1_5215821_5217222_-	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated	NA|302aa|down_6|NZ_CP014013.1_5217264_5218170_-	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated	NA|514aa|down_7|NZ_CP014013.1_5218268_5219810_-	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated	NA|180aa|down_8|NZ_CP014013.1_5219844_5220384_-	PRK05758, PRK05758, F0F1 ATP synthase subunit delta; Validated	NA|157aa|down_9|NZ_CP014013.1_5220396_5220867_-	PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated
