The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP014016	Staphylococcus simulans strain FDAARGOS_124 chromosome, complete genome	2647556	19541	49185	2647556	protease,holin	Enterobacteria_phage(33.33%)	27	NA	NA
WP_002479791.1|19541_21641_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	37.2	1.0e-113
WP_002479790.1|21803_22490_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002479789.1|22502_24038_+	gluconokinase	NA	NA	NA	NA	NA
WP_061054600.1|24174_25536_+	gluconate permease	NA	NA	NA	NA	NA
WP_002479787.1|25606_26386_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061054601.1|26430_27684_+	acetylornithine deacetylase	NA	NA	NA	NA	NA
WP_002479785.1|27780_29949_-	RNA degradosome polyphosphate kinase	NA	NA	NA	NA	NA
WP_037556180.1|30155_31685_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_002479783.1|32030_32492_+	DUF1307 domain-containing protein	NA	NA	NA	NA	NA
WP_105165370.1|32741_33464_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_061054602.1|33652_34396_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002479780.1|34564_35233_+	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	34.2	5.2e-19
WP_002479779.1|35229_36009_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_002479778.1|36180_37344_+	MFS transporter	NA	NA	NA	NA	NA
WP_037556068.1|37382_38762_-	carboxylesterase/lipase family protein	NA	NA	NA	NA	NA
WP_002479776.1|38844_40482_-	APC family permease	NA	NA	NA	NA	NA
WP_061054603.1|40958_41555_+	YdeI/OmpD-associated family protein	NA	NA	NA	NA	NA
WP_002479773.1|42022_43237_+|holin	betaine/proline/choline family ABC transporter ATP-binding protein	holin	Q6GZ03	Mycoplasma_phage	50.5	3.8e-20
WP_002479772.1|43236_43866_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_002479771.1|43897_44842_+	osmoprotectant ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002479770.1|44841_45531_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_002479769.1|45624_46392_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_002479768.1|46505_47048_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002479767.1|47049_47412_-	DUF3147 family protein	NA	NA	NA	NA	NA
WP_002479766.1|47431_47791_-	DUF3147 family protein	NA	NA	NA	NA	NA
WP_002479765.1|48025_48727_-|holin	antiholin-like protein LrgB	holin	NA	NA	NA	NA
WP_002479764.1|48723_49185_-|holin	antiholin-like murein hydrolase modulator LrgA	holin	NA	NA	NA	NA
>prophage 2
NZ_CP014016	Staphylococcus simulans strain FDAARGOS_124 chromosome, complete genome	2647556	568717	603082	2647556	tRNA	Staphylococcus_phage(92.59%)	35	NA	NA
WP_096754676.1|568717_570679_-	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	30.3	1.8e-67
WP_103364072.1|571020_571512_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002481263.1|571712_572405_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002481262.1|572520_573909_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	56.9	3.8e-157
WP_002481261.1|573911_574922_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	54.0	8.5e-98
WP_002481260.1|574912_575170_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	75.7	4.7e-29
WP_002481259.1|575247_575739_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	50.3	1.0e-35
WP_002481258.1|575704_576478_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	66.5	1.7e-93
WP_002481257.1|576530_578123_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	81.4	4.0e-259
WP_002481256.1|578509_579706_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	81.4	8.8e-187
WP_002481255.1|579802_580702_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	75.4	4.0e-99
WP_002481254.1|580823_581660_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	64.1	3.2e-103
WP_002481253.1|581711_582065_-	CrcB family protein	NA	NA	NA	NA	NA
WP_061054676.1|582057_582429_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	63.6	5.2e-37
WP_002481251.1|582489_582798_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002481250.1|582985_583702_+	transaldolase	NA	M1PR54	Cyanophage	35.0	3.8e-20
WP_002481249.1|583843_584305_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	40.9	1.8e-18
WP_002481248.1|584279_584720_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002481247.1|584719_585217_-	hypothetical protein	NA	A0A2H4PQT5	Staphylococcus_phage	42.5	1.1e-21
WP_023016000.1|585421_585643_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002481245.1|586042_586888_+	N-acetylglucosaminidase	NA	A0A1W6JNR1	Staphylococcus_phage	41.7	4.2e-42
WP_002481244.1|587029_588511_+	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	64.5	1.0e-14
WP_002481243.1|588904_589954_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	59.6	9.0e-119
WP_002481242.1|589958_590591_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	61.4	3.7e-67
WP_002481241.1|590606_591788_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	73.5	1.8e-168
WP_002481240.1|591820_592282_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	72.5	1.1e-57
WP_002481239.1|592355_593351_-	proline dehydrogenase family protein	NA	A0A2H4PQT6	Staphylococcus_phage	63.3	2.9e-114
WP_002481238.1|593612_594443_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_002481237.1|594619_595576_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_002481236.1|595641_596199_-	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	62.2	6.0e-61
WP_002481235.1|596195_597158_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	84.4	2.5e-67
WP_061054677.1|597430_598609_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	73.2	6.7e-163
WP_002481232.1|598987_601402_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	84.9	0.0e+00
WP_002481231.1|601422_601740_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	66.7	1.5e-32
WP_061054678.1|601825_603082_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	75.0	2.6e-40
>prophage 3
NZ_CP014016	Staphylococcus simulans strain FDAARGOS_124 chromosome, complete genome	2647556	726337	736411	2647556	tRNA	Klosneuvirus(33.33%)	7	NA	NA
WP_061054696.1|726337_728611_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	30.7	2.7e-75
WP_023016066.1|728629_729148_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	44.4	8.1e-28
WP_002481117.1|729499_731689_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	38.0	9.0e-12
WP_002481116.1|731704_732157_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_002481115.1|732153_733029_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A0N9SGH1	Paenibacillus_phage	33.1	6.8e-11
WP_002481114.1|733354_734629_+|tRNA	histidine--tRNA ligase	tRNA	A0A2K9L6G5	Tupanvirus	23.8	3.9e-15
WP_061054697.1|734644_736411_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SIS0	Klosneuvirus	33.7	9.2e-07
>prophage 4
NZ_CP014016	Staphylococcus simulans strain FDAARGOS_124 chromosome, complete genome	2647556	1308080	1316502	2647556		Prochlorococcus_phage(33.33%)	9	NA	NA
WP_002480502.1|1308080_1308647_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.3	3.5e-32
WP_061054794.1|1308643_1309684_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.5	1.5e-68
WP_002480500.1|1309688_1311110_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	30.8	5.6e-47
WP_002480499.1|1311088_1313278_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.4	7.4e-139
WP_002480498.1|1313270_1313942_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_002480497.1|1313941_1314202_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002480496.1|1314201_1314906_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	42.9	1.1e-48
WP_002480495.1|1314905_1316033_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_002480494.1|1316019_1316502_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	4.7e-22
>prophage 5
NZ_CP014016	Staphylococcus simulans strain FDAARGOS_124 chromosome, complete genome	2647556	1518767	1578468	2647556	tail,protease,integrase,portal,transposase,terminase,capsid,head	Staphylococcus_phage(55.26%)	71	1562669:1562683	1584139:1584153
WP_002481612.1|1518767_1519526_-	Fe-S cluster assembly ATPase SufC	NA	A0A2R8FG22	Brazilian_cedratvirus	28.3	1.8e-07
WP_061054819.1|1520283_1520874_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002481609.1|1521358_1521829_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	53.6	4.4e-41
WP_061054820.1|1521888_1522524_-	hypothetical protein	NA	Q4ZE82	Staphylococcus_phage	29.7	4.8e-22
WP_061054821.1|1522520_1523039_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061054822.1|1523051_1523375_-	hypothetical protein	NA	A0A2H4JHK4	uncultured_Caudovirales_phage	36.5	1.2e-10
WP_061055253.1|1523689_1524322_-	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	70.8	3.9e-85
WP_061054823.1|1525004_1526660_-	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	42.5	1.1e-131
WP_061054824.1|1526664_1527522_-	primase alpha helix C-terminal domain-containing protein	NA	A0A2H4JEH3	uncultured_Caudovirales_phage	55.7	3.2e-90
WP_061054825.1|1527607_1527901_-	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	52.8	2.7e-20
WP_061054826.1|1527901_1528312_-	hypothetical protein	NA	A0A2H4JBF1	uncultured_Caudovirales_phage	85.8	1.8e-59
WP_061054827.1|1528313_1528517_-	hypothetical protein	NA	A0A2H4JD47	uncultured_Caudovirales_phage	69.8	2.9e-18
WP_061054828.1|1528535_1528808_-	hypothetical protein	NA	Q4ZE77	Staphylococcus_phage	57.8	5.7e-25
WP_061055254.1|1528773_1529019_-	helix-turn-helix transcriptional regulator	NA	Q4ZE78	Staphylococcus_phage	58.8	8.8e-17
WP_061054829.1|1529201_1529759_+	helix-turn-helix transcriptional regulator	NA	A0A0E3U244	Fusobacterium_phage	49.2	1.3e-07
WP_061054830.1|1529774_1530998_+|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	49.5	6.2e-103
WP_002481595.1|1531140_1531968_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002481594.1|1531992_1532688_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_061054831.1|1532680_1533706_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	37.4	2.1e-27
WP_002481592.1|1533968_1534265_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_002481591.1|1534261_1534624_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002481590.1|1534915_1535296_-	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_002481589.1|1535450_1535807_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	47.7	5.9e-22
WP_002481588.1|1535949_1536270_+	thioredoxin family protein	NA	A0A1X9I9P5	Staphylococcus_phage	36.4	8.3e-07
WP_002481587.1|1536338_1536881_-	nitroreductase	NA	NA	NA	NA	NA
WP_002481586.1|1536954_1537680_-	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	27.9	3.1e-09
WP_002481585.1|1538087_1538603_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002480485.1|1538758_1540075_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	29.6	4.7e-40
WP_023015356.1|1540313_1540517_-	sterile alpha motif-like domain-containing protein	NA	NA	NA	NA	NA
WP_061054832.1|1540985_1541843_-	TPM domain-containing protein	NA	NA	NA	NA	NA
WP_002481583.1|1541839_1542421_-	LemA family protein	NA	NA	NA	NA	NA
WP_002481582.1|1542638_1543943_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_002481581.1|1544061_1544808_+	hypothetical protein	NA	A0A2H4J494	uncultured_Caudovirales_phage	77.8	7.6e-19
WP_002481579.1|1544882_1545086_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	67.7	4.1e-20
WP_002481578.1|1545448_1546261_+	oxidoreductase	NA	NA	NA	NA	NA
WP_061055255.1|1546329_1546944_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_002481576.1|1547380_1548070_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	38.6	9.4e-16
WP_002481575.1|1548681_1549152_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	84.9	3.2e-68
WP_002481574.1|1549215_1551579_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.5	2.3e-93
WP_002481573.1|1551622_1552363_-	carboxylesterase	NA	NA	NA	NA	NA
WP_002481572.1|1552456_1552693_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_002481571.1|1552781_1553249_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002481570.1|1553441_1554746_-	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	78.7	4.5e-192
WP_002481569.1|1554839_1556357_-	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA	NA
WP_002481568.1|1556358_1557120_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_002481567.1|1557159_1558350_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_002481566.1|1558616_1559624_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_002481565.1|1559677_1560703_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002481564.1|1561006_1561231_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061054833.1|1561275_1562064_-	DUF4887 domain-containing protein	NA	NA	NA	NA	NA
WP_002481562.1|1562647_1563550_+	TIGR01777 family protein	NA	NA	NA	NA	NA
1562669:1562683	attL	GGCGGTACAGGTTTA	NA	NA	NA	NA
WP_002481561.1|1563899_1564484_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	55.8	4.8e-53
WP_061054834.1|1565341_1565701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060804156.1|1565782_1566091_-|head	phage head closure protein	head	NA	NA	NA	NA
WP_061054835.1|1566150_1567794_-|terminase	terminase large subunit	terminase	A0A290GJW3	Caldibacillus_phage	50.3	6.5e-156
WP_060804154.1|1567786_1568107_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061054837.1|1568526_1568808_-|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
WP_061054838.1|1568873_1570106_-|capsid	phage major capsid protein	capsid	NA	NA	NA	NA
WP_061054839.1|1570107_1570674_-|head,protease	HK97 family phage prohead protease	head,protease	U3PDW7	Staphylococcus_phage	37.1	2.7e-21
WP_061054840.1|1570660_1571863_-|portal	phage portal protein	portal	A0A1L2BY94	Clostridium_phage	34.9	1.7e-60
WP_061054841.1|1572032_1572305_-	hypothetical protein	NA	Q4ZE68	Staphylococcus_phage	70.8	1.2e-30
WP_061054842.1|1572291_1573095_-	bifunctional DNA primase/polymerase	NA	Q4ZE69	Staphylococcus_phage	76.8	3.7e-120
WP_061054843.1|1573264_1574884_-	hypothetical protein	NA	A0A1W6JPF4	Staphylococcus_phage	74.1	1.0e-230
WP_061054844.1|1574941_1575241_-	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	48.5	6.1e-20
WP_061054845.1|1575237_1575582_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061054846.1|1575586_1575793_-	hypothetical protein	NA	A0A1W6JPA6	Staphylococcus_phage	63.1	5.1e-18
WP_061054847.1|1575795_1575999_-	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	68.7	7.5e-22
WP_061054848.1|1576015_1576261_-	DUF771 domain-containing protein	NA	NA	NA	NA	NA
WP_061054849.1|1576305_1576533_-	helix-turn-helix transcriptional regulator	NA	A0A1Q1PVY0	Staphylococcus_phage	47.9	1.9e-10
WP_105165378.1|1576652_1577411_+	helix-turn-helix transcriptional regulator	NA	A0A1Q1PVX8	Staphylococcus_phage	37.5	1.2e-06
WP_061054851.1|1577412_1578468_+|integrase	site-specific integrase	integrase	A0A1W6JQE7	Staphylococcus_phage	43.1	5.8e-65
1584139:1584153	attR	TAAACCTGTACCGCC	NA	NA	NA	NA
>prophage 6
NZ_CP014016	Staphylococcus simulans strain FDAARGOS_124 chromosome, complete genome	2647556	1619277	1631758	2647556		uncultured_Caudovirales_phage(50.0%)	10	NA	NA
WP_172954254.1|1619277_1620234_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4IY97	uncultured_Caudovirales_phage	80.1	1.3e-132
WP_002481524.1|1620551_1621526_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	90.7	2.1e-170
WP_002481523.1|1621638_1623744_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	88.0	0.0e+00
WP_023015387.1|1623706_1624108_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	65.4	1.8e-43
WP_002481521.1|1624992_1625880_+	DMT family transporter	NA	NA	NA	NA	NA
WP_002481520.1|1625882_1626386_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	70.1	6.6e-51
WP_002481519.1|1626568_1628092_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	37.7	7.1e-72
WP_002481518.1|1628386_1629889_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	34.3	3.0e-67
WP_002481517.1|1630015_1630552_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_002481516.1|1630693_1631758_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.2	2.2e-19
