assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001559195.1_ASM155919v2	NZ_CP014028	Achromobacter xylosoxidans strain FDAARGOS_150 chromosome, complete genome	1	675416-675625	1	CRISPRCasFinder	no	csa3	DinG,csa3,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DEDDh,WYL	Type I-A	CCCCCCGAGGGGGCGTTTTTGCCTTGGGGCGGCCCGGCGGCAAAAAAAGCC	51	1	1	675467-675574	NZ_CP014028.1_675388-675495	NA	1	1	Orphan	DinG,csa3,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DEDDh,WYL	NA|384aa|up_5|NZ_CP014028.1_670741_671893_+,NA	NA|147aa|up_9|NZ_CP014028.1_666076_666517_+	pfam07849, DUF1641, Protein of unknown function (DUF1641)	NA|869aa|up_8|NZ_CP014028.1_666629_669236_-	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|145aa|up_7|NZ_CP014028.1_669388_669823_+	pfam06094, GGACT, Gamma-glutamyl cyclotransferase, AIG2-like	NA|243aa|up_6|NZ_CP014028.1_669947_670676_+	PRK11161, PRK11161, fumarate/nitrate reduction transcriptional regulator Fnr	NA|384aa|up_5|NZ_CP014028.1_670741_671893_+	NA	NA|434aa|up_4|NZ_CP014028.1_672015_673317_+	cd17367, MFS_KgtP, Alpha-ketoglutarate permease of the Major Facilitator Superfamily of transporters	csa3|146aa|up_3|NZ_CP014028.1_673449_673887_+	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|149aa|up_2|NZ_CP014028.1_673790_674237_+	cd07814, SRPBCC_CalC_Aha1-like, Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins	NA|112aa|up_1|NZ_CP014028.1_674254_674590_-	PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated	NA|196aa|up_0|NZ_CP014028.1_674608_675196_-	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|308aa|down_0|NZ_CP014028.1_675751_676675_+	cd08475, PBP2_CrgA_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|418aa|down_1|NZ_CP014028.1_676730_677984_-	cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins	NA|120aa|down_2|NZ_CP014028.1_679263_679623_-	cd02226, cupin_YdbB-like, Bacillus subtilis YdbB and related proteins, cupin domain	NA|711aa|down_3|NZ_CP014028.1_679731_681864_-	COG4773, FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism]	NA|715aa|down_4|NZ_CP014028.1_682043_684188_-	COG4773, FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism]	NA|331aa|down_5|NZ_CP014028.1_684872_685865_+	pfam14525, AraC_binding_2, AraC-binding-like domain	NA|366aa|down_6|NZ_CP014028.1_686055_687153_+	pfam02317, Octopine_DH, NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain	NA|338aa|down_7|NZ_CP014028.1_687155_688169_+	PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydrogenase; Validated	NA|404aa|down_8|NZ_CP014028.1_688196_689408_-	PRK11289, ampC, beta-lactamase/D-alanine carboxypeptidase; Provisional	NA|410aa|down_9|NZ_CP014028.1_689785_691015_+	PRK12409, PRK12409, D-amino acid dehydrogenase small subunit; Provisional
GCF_001559195.1_ASM155919v2	NZ_CP014028	Achromobacter xylosoxidans strain FDAARGOS_150 chromosome, complete genome	2	1057445-1057549	2	CRISPRCasFinder	no		DinG,csa3,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DEDDh,WYL	Orphan	CCCCCAGGGGGCGCCGGTGGCGGACCGGCGGAGCCGG	37	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DEDDh,WYL	NA|534aa|up_6|NZ_CP014028.1_1045265_1046867_-,NA	NA|453aa|up_9|NZ_CP014028.1_1041696_1043055_+	PRK10307, PRK10307, colanic acid biosynthesis glycosyltransferase WcaI	NA|221aa|up_8|NZ_CP014028.1_1042982_1043645_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|249aa|up_7|NZ_CP014028.1_1043953_1044700_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|534aa|up_6|NZ_CP014028.1_1045265_1046867_-	NA	NA|224aa|up_5|NZ_CP014028.1_1047224_1047896_+	pfam17939, TetR_C_30, Tetracyclin repressor-like, C-terminal domain	NA|783aa|up_4|NZ_CP014028.1_1047955_1050304_+	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|430aa|up_3|NZ_CP014028.1_1050331_1051621_+	PRK08170, PRK08170, acetyl-CoA C-acetyltransferase	NA|645aa|up_2|NZ_CP014028.1_1051620_1053555_+	PRK11154, fadJ, fatty acid oxidation complex subunit alpha FadJ	NA|437aa|up_1|NZ_CP014028.1_1053653_1054964_+	pfam03349, Toluene_X, Outer membrane protein transport protein (OMPP1/FadL/TodX)	NA|797aa|up_0|NZ_CP014028.1_1055024_1057415_+	COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]	NA|400aa|down_0|NZ_CP014028.1_1057619_1058819_+	PRK09052, PRK09052, acetyl-CoA C-acyltransferase	NA|183aa|down_1|NZ_CP014028.1_1058837_1059386_+	pfam14539, DUF4442, Domain of unknown function (DUF4442)	NA|199aa|down_2|NZ_CP014028.1_1059346_1059943_+	pfam16036, Chalcone_3, Chalcone isomerase-like	NA|565aa|down_3|NZ_CP014028.1_1059945_1061640_+	PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated	NA|523aa|down_4|NZ_CP014028.1_1061683_1063252_-	cd16028, PMH, Phosphonate monoester hydrolase/phosphodiesterase	NA|325aa|down_5|NZ_CP014028.1_1063263_1064238_-	cd13579, PBP2_Bug_NagM, Uncharacterized NagM-like protein of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold	NA|172aa|down_6|NZ_CP014028.1_1064367_1064883_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|618aa|down_7|NZ_CP014028.1_1064954_1066808_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|343aa|down_8|NZ_CP014028.1_1066958_1067987_+	PRK05274, PRK05274, 2-keto-3-deoxygluconate permease; Provisional	NA|407aa|down_9|NZ_CP014028.1_1067983_1069204_+	pfam07005, DUF1537, Putative sugar-binding N-terminal domain
GCF_001559195.1_ASM155919v2	NZ_CP014028	Achromobacter xylosoxidans strain FDAARGOS_150 chromosome, complete genome	3	1205876-1206887	1,3,1	CRT,CRISPRCasFinder,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DinG,csa3,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DEDDh,WYL	Type I-E	CGGTTCATCCCCCGCTCACGCGGGGAACAC,CGGTTCATCCCCGCTCACGCGGGGAACAC,CGGTTCATCCCCGCTCACGCGGGGAACAC	30,29,29	0	0	NA	NA	I-E:I-E:I-E	16,15,14	16	TypeI-E	DinG,csa3,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DEDDh,WYL	NA|96aa|up_9|NZ_CP014028.1_1193773_1194061_-,NA|51aa|up_0|NZ_CP014028.1_1205288_1205441_-,NA	NA|96aa|up_9|NZ_CP014028.1_1193773_1194061_-	NA	NA|724aa|up_8|NZ_CP014028.1_1194143_1196315_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|49aa|up_7|NZ_CP014028.1_1196575_1196722_+	PRK07231, FabG-like, SDR family oxidoreductase	NA|606aa|up_6|NZ_CP014028.1_1196725_1198543_+	COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|236aa|up_5|NZ_CP014028.1_1198695_1199403_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|566aa|up_4|NZ_CP014028.1_1199755_1201453_+	PRK08026, PRK08026, FliC/FljB family flagellin	NA|497aa|up_3|NZ_CP014028.1_1201571_1203062_-	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional	NA|322aa|up_2|NZ_CP014028.1_1203427_1204393_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|206aa|up_1|NZ_CP014028.1_1204543_1205161_+	PRK10958, PRK10958, leucine export protein LeuE; Provisional	NA|51aa|up_0|NZ_CP014028.1_1205288_1205441_-	NA	cas2|100aa|down_0|NZ_CP014028.1_1206951_1207251_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|297aa|down_1|NZ_CP014028.1_1207247_1208138_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|203aa|down_2|NZ_CP014028.1_1208167_1208776_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas5|224aa|down_3|NZ_CP014028.1_1208750_1209422_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|378aa|down_4|NZ_CP014028.1_1209423_1210557_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|181aa|down_5|NZ_CP014028.1_1210593_1211136_-	PRK13921, PRK13921, CRISPR-associated Cse2 family protein; Provisional	cas8e|516aa|down_6|NZ_CP014028.1_1211136_1212684_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|896aa|down_7|NZ_CP014028.1_1212885_1215573_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|486aa|down_8|NZ_CP014028.1_1216572_1218030_+	PRK01642, cls, cardiolipin synthetase; Reviewed	NA|143aa|down_9|NZ_CP014028.1_1218108_1218537_-	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria
GCF_001559195.1_ASM155919v2	NZ_CP014028	Achromobacter xylosoxidans strain FDAARGOS_150 chromosome, complete genome	4	2361461-2361550	4	CRISPRCasFinder	no		DinG,csa3,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DEDDh,WYL	Orphan	CAAGGGGGCGACACCTGCAGACCGG	25	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DEDDh,WYL	NA,NA|112aa|down_9|NZ_CP014028.1_2368157_2368493_+	NA|276aa|up_9|NZ_CP014028.1_2347957_2348785_-	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain	NA|346aa|up_8|NZ_CP014028.1_2349228_2350266_+	PRK03739, PRK03739, 2-isopropylmalate synthase; Validated	NA|297aa|up_7|NZ_CP014028.1_2350213_2351104_-	cd08420, PBP2_CysL_like, C-terminal substrate binding domain of LysR-type transcriptional regulator CysL, which activates the transcription of the cysJI operon encoding sulfite reductase, contains the type 2 periplasmic binding fold	NA|182aa|up_6|NZ_CP014028.1_2351228_2351774_+	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|394aa|up_5|NZ_CP014028.1_2351770_2352952_+	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters	NA|553aa|up_4|NZ_CP014028.1_2352929_2354588_-	cd01948, EAL, EAL domain	NA|238aa|up_3|NZ_CP014028.1_2354891_2355605_-	pfam06508, QueC, Queuosine biosynthesis protein QueC	NA|949aa|up_2|NZ_CP014028.1_2355776_2358623_+	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	NA|312aa|up_1|NZ_CP014028.1_2358968_2359904_+	PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydrogenase; Validated	NA|447aa|up_0|NZ_CP014028.1_2360086_2361427_+	COG2031, AtoE, Short chain fatty acids transporter [Lipid metabolism]	NA|243aa|down_0|NZ_CP014028.1_2361651_2362380_+	PRK07577, PRK07577, SDR family oxidoreductase	NA|261aa|down_1|NZ_CP014028.1_2362430_2363213_-	TIGR02431, p-hydroxybenzoate_hydroxylase_transcriptional, beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family	NA|230aa|down_2|NZ_CP014028.1_2363383_2364073_+	TIGR02429, 3-oxoadipate_CoA-transferase_subunit_A, 3-oxoacid CoA-transferase, A subunit	NA|215aa|down_3|NZ_CP014028.1_2364069_2364714_+	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit	NA|92aa|down_4|NZ_CP014028.1_2364766_2365042_+	TIGR03221, muco_delta, muconolactone delta-isomerase	NA|99aa|down_5|NZ_CP014028.1_2365054_2365351_+	PRK12863, PRK12863, YciI-like protein; Reviewed	NA|260aa|down_6|NZ_CP014028.1_2365406_2366186_+	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase	NA|347aa|down_7|NZ_CP014028.1_2366189_2367230_+	pfam04199, Cyclase, Putative cyclase	NA|123aa|down_8|NZ_CP014028.1_2367410_2367779_-	PRK11505, PRK11505, phosphate starvation-inducible protein PsiF	NA|112aa|down_9|NZ_CP014028.1_2368157_2368493_+	NA
GCF_001559195.1_ASM155919v2	NZ_CP014028	Achromobacter xylosoxidans strain FDAARGOS_150 chromosome, complete genome	5	2586873-2586980	5	CRISPRCasFinder	no		DinG,csa3,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DEDDh,WYL	Orphan	GAAGGCGGCTTCCGTGGCGGCGACCGC	27	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DEDDh,WYL	NA|106aa|up_7|NZ_CP014028.1_2568690_2569008_+,NA|131aa|up_4|NZ_CP014028.1_2572257_2572650_-,NA|106aa|up_3|NZ_CP014028.1_2573464_2573782_-,NA|259aa|down_8|NZ_CP014028.1_2597277_2598054_+	NA|221aa|up_9|NZ_CP014028.1_2567332_2567995_+	cd19365, TenA_C-like, uncharacterized TenA_C proteins	NA|116aa|up_8|NZ_CP014028.1_2568034_2568382_-	pfam13682, CZB, Chemoreceptor zinc-binding domain	NA|106aa|up_7|NZ_CP014028.1_2568690_2569008_+	NA	NA|483aa|up_6|NZ_CP014028.1_2568986_2570435_-	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal	NA|577aa|up_5|NZ_CP014028.1_2570439_2572170_-	cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia coli HscC and similar proteins	NA|131aa|up_4|NZ_CP014028.1_2572257_2572650_-	NA	NA|106aa|up_3|NZ_CP014028.1_2573464_2573782_-	NA	NA|2796aa|up_2|NZ_CP014028.1_2573778_2582166_-	pfam13332, Fil_haemagg_2, Haemagluttinin repeat	NA|583aa|up_1|NZ_CP014028.1_2582237_2583986_-	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|254aa|up_0|NZ_CP014028.1_2584260_2585022_+	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional	NA|394aa|down_0|NZ_CP014028.1_2587164_2588346_+	COG1565, COG1565, Uncharacterized conserved protein [Function unknown]	NA|368aa|down_1|NZ_CP014028.1_2588358_2589462_-	PRK13297, PRK13297, tRNA CCA-pyrophosphorylase; Provisional	NA|693aa|down_2|NZ_CP014028.1_2589458_2591537_-	cd13401, Slt70-like, 70kDa soluble lytic transglycosylase (Slt70) and similar proteins	NA|225aa|down_3|NZ_CP014028.1_2591804_2592479_+	TIGR02727, Uncharacterized_protein_YqgN, 5,10-methenyltetrahydrofolate synthetase	NA|477aa|down_4|NZ_CP014028.1_2592884_2594315_+	COG2308, COG2308, Uncharacterized conserved protein [Function unknown]	NA|329aa|down_5|NZ_CP014028.1_2594317_2595304_+	pfam04168, Alpha-E, A predicted alpha-helical domain with a conserved ER motif	NA|268aa|down_6|NZ_CP014028.1_2595317_2596121_+	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]	NA|288aa|down_7|NZ_CP014028.1_2596176_2597040_+	cd03765, proteasome_beta_bacterial, Bacterial proteasome, beta subunit	NA|259aa|down_8|NZ_CP014028.1_2597277_2598054_+	NA	NA|333aa|down_9|NZ_CP014028.1_2598202_2599201_+	cd13576, PBP2_BugD_Asp, Aspartic acid transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold
