assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001566335.1_ASM156633v1	NZ_CP014348	Escherichia coli str. K-12 substr. MG1655 strain JW5437-1 chromosome, complete genome	1	147831-147927	1	CRISPRCasFinder	no		WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	NA,NA	NA|231aa|up_9|NZ_CP014348.1_139626_140319_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP014348.1_140538_141081_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP014348.1_141551_142418_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP014348.1_142419_142632_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP014348.1_142739_143261_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP014348.1_143296_144682_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP014348.1_144855_145350_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP014348.1_145352_146075_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP014348.1_146192_146702_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP014348.1_146698_147766_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP014348.1_147960_148854_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP014348.1_148850_149666_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP014348.1_149676_150936_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP014348.1_150945_152613_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP014348.1_152929_153979_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP014348.1_154000_155236_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP014348.1_155246_156032_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|NZ_CP014348.1_156259_157405_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP014348.1_157426_158728_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP014348.1_158784_160146_-	PRK08044, PRK08044, allantoinase AllB
GCF_001566335.1_ASM156633v1	NZ_CP014348	Escherichia coli str. K-12 substr. MG1655 strain JW5437-1 chromosome, complete genome	2	288073-288217	2	CRISPRCasFinder	no		WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	NA,NA|28aa|down_2|NZ_CP014348.1_290262_290346_-	NA|357aa|up_9|NZ_CP014348.1_273211_274282_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_CP014348.1_274374_274956_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_CP014348.1_274960_276778_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_CP014348.1_276933_278307_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_CP014348.1_278382_279702_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_CP014348.1_280108_281404_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_CP014348.1_281461_282151_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_CP014348.1_282340_283543_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_CP014348.1_283539_286686_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_CP014348.1_286811_287996_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_CP014348.1_288240_289149_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_CP014348.1_289273_290185_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_CP014348.1_290262_290346_-	NA	NA|95aa|down_3|NZ_CP014348.1_290831_291116_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_CP014348.1_291187_291865_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_CP014348.1_292122_292314_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_CP014348.1_292363_292888_-	PRK03731, aroL, shikimate kinase AroL	NA|153aa|down_7|NZ_CP014348.1_293070_293529_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_CP014348.1_293648_294458_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_CP014348.1_294474_295590_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCF_001566335.1_ASM156633v1	NZ_CP014348	Escherichia coli str. K-12 substr. MG1655 strain JW5437-1 chromosome, complete genome	3	2101759-2101899	3	CRISPRCasFinder	no		WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	Orphan	CACGCCGCATCCGCCAGTGGCGCGGTGCAGATGCCGGATGC	41	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	NA,NA|357aa|down_1|NZ_CP014348.1_2104353_2105424_-	NA|184aa|up_9|NZ_CP014348.1_2091480_2092032_+	pfam10688, Imp-YgjV, Bacterial inner membrane protein	NA|415aa|up_8|NZ_CP014348.1_2092036_2093281_-	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional	NA|322aa|up_7|NZ_CP014348.1_2093679_2094645_-	TIGR03718, R_switched_Alx, integral membrane protein, TerC family	NA|329aa|up_6|NZ_CP014348.1_2094927_2095914_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|231aa|up_5|NZ_CP014348.1_2095992_2096685_-	COG2949, SanA, Uncharacterized membrane protein [Function unknown]	NA|168aa|up_4|NZ_CP014348.1_2096761_2097265_-	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only]	NA|379aa|up_3|NZ_CP014348.1_2097349_2098486_+	PRK15001, PRK15001, 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG	NA|105aa|up_2|NZ_CP014348.1_2098769_2099084_+	COG4680, COG4680, Uncharacterized protein conserved in bacteria [Function unknown]	NA|139aa|up_1|NZ_CP014348.1_2099080_2099497_+	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription]	NA|673aa|up_0|NZ_CP014348.1_2099541_2101560_-	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain	NA|784aa|down_0|NZ_CP014348.1_2101985_2104337_-	PRK10137, PRK10137, alpha-glucosidase; Provisional	NA|357aa|down_1|NZ_CP014348.1_2104353_2105424_-	NA	NA|478aa|down_2|NZ_CP014348.1_2105557_2106991_-	PRK15238, PRK15238, inner membrane transporter YjeM; Provisional	NA|150aa|down_3|NZ_CP014348.1_2107053_2107503_-	PRK10202, ebgC, beta-galactosidase subunit beta	NA|1031aa|down_4|NZ_CP014348.1_2107499_2110592_-	PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed	NA|328aa|down_5|NZ_CP014348.1_2110775_2111759_-	PRK10339, PRK10339, DNA-binding transcriptional repressor EbgR; Provisional	NA|111aa|down_6|NZ_CP014348.1_2111977_2112310_+	PRK10089, PRK10089, chaperone CsaA	NA|460aa|down_7|NZ_CP014348.1_2112351_2113731_-	PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional	NA|507aa|down_8|NZ_CP014348.1_2114148_2115669_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|208aa|down_9|NZ_CP014348.1_2115822_2116446_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]
GCF_001566335.1_ASM156633v1	NZ_CP014348	Escherichia coli str. K-12 substr. MG1655 strain JW5437-1 chromosome, complete genome	4	2428818-2429211	1,4,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACC	28,28,28	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	Unclear	WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	NA|47aa|up_1|NZ_CP014348.1_2427527_2427668_-,NA	NA|434aa|up_9|NZ_CP014348.1_2418224_2419526_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP014348.1_2419573_2421808_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP014348.1_2421885_2422134_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP014348.1_2422133_2422469_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP014348.1_2422539_2423331_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP014348.1_2423558_2425196_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP014348.1_2425283_2426582_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP014348.1_2426641_2427514_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP014348.1_2427527_2427668_-	NA	NA|224aa|up_0|NZ_CP014348.1_2427806_2428478_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP014348.1_2429850_2431329_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP014348.1_2431355_2432633_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP014348.1_2432951_2433737_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP014348.1_2433806_2435261_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP014348.1_2435282_2436692_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP014348.1_2436669_2437449_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP014348.1_2437445_2438306_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP014348.1_2438453_2439029_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP014348.1_2439045_2439306_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP014348.1_2439296_2440568_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_001566335.1_ASM156633v1	NZ_CP014348	Escherichia coli str. K-12 substr. MG1655 strain JW5437-1 chromosome, complete genome	5	2454762-2455524	2,5,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	Type I-E	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,12,12	12	TypeI-E	WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	NA,NA	NA|571aa|up_9|NZ_CP014348.1_2443125_2444838_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_CP014348.1_2444912_2445647_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|889aa|up_7|NZ_CP014348.1_2446005_2448672_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|503aa|up_6|NZ_CP014348.1_2449086_2450595_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|up_5|NZ_CP014348.1_2450587_2451070_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|NZ_CP014348.1_2451082_2452174_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|up_3|NZ_CP014348.1_2452176_2452851_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|NZ_CP014348.1_2452837_2453437_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|NZ_CP014348.1_2453452_2454370_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NZ_CP014348.1_2454371_2454656_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP014348.1_2455606_2456644_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP014348.1_2456895_2457804_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP014348.1_2457805_2459233_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP014348.1_2459232_2459838_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP014348.1_2459887_2460211_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP014348.1_2460404_2460716_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP014348.1_2460734_2461445_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP014348.1_2461444_2461924_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP014348.1_2461920_2462970_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP014348.1_2462950_2463712_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_001566335.1_ASM156633v1	NZ_CP014348	Escherichia coli str. K-12 substr. MG1655 strain JW5437-1 chromosome, complete genome	6	2987603-2987720	6	CRISPRCasFinder	no		WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	NA,NA	NA|62aa|up_9|NZ_CP014348.1_2976888_2977074_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|NZ_CP014348.1_2977086_2977986_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP014348.1_2978178_2979369_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP014348.1_2979365_2980625_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP014348.1_2980614_2982243_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP014348.1_2982515_2983874_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP014348.1_2983878_2984955_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP014348.1_2985417_2986068_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP014348.1_2986121_2986376_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP014348.1_2986375_2987506_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP014348.1_2987739_2990025_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP014348.1_2990720_2994473_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP014348.1_2994600_2995323_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP014348.1_2995469_2998097_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP014348.1_2998245_2999934_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP014348.1_2999930_3000554_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|down_6|NZ_CP014348.1_3005092_3006742_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_7|NZ_CP014348.1_3006746_3007523_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_8|NZ_CP014348.1_3007596_3008781_-	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|441aa|down_9|NZ_CP014348.1_3008811_3010134_-	pfam02667, SCFA_trans, Short chain fatty acid transporter
GCF_001566335.1_ASM156633v1	NZ_CP014348	Escherichia coli str. K-12 substr. MG1655 strain JW5437-1 chromosome, complete genome	7	3587547-3587670	7	CRISPRCasFinder	no	DEDDh	WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	NA,NA|30aa|down_7|NZ_CP014348.1_3596566_3596656_+	NA|471aa|up_9|NZ_CP014348.1_3577001_3578414_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP014348.1_3578970_3579180_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP014348.1_3579634_3580261_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP014348.1_3580281_3582384_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP014348.1_3582396_3583035_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP014348.1_3583098_3583767_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP014348.1_3583763_3584549_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP014348.1_3584552_3585365_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP014348.1_3585376_3586981_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP014348.1_3587106_3587412_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP014348.1_3587984_3589241_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP014348.1_3589281_3590655_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP014348.1_3590869_3591511_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP014348.1_3591550_3592699_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP014348.1_3592989_3594201_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP014348.1_3594313_3595246_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP014348.1_3595242_3596268_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP014348.1_3596566_3596656_+	NA	NA|390aa|down_8|NZ_CP014348.1_3596821_3597991_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP014348.1_3598152_3598734_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_001566335.1_ASM156633v1	NZ_CP014348	Escherichia coli str. K-12 substr. MG1655 strain JW5437-1 chromosome, complete genome	8	4264867-4264958	8	CRISPRCasFinder	no		WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	NA|70aa|up_9|NZ_CP014348.1_4253943_4254153_-,NA	NA|70aa|up_9|NZ_CP014348.1_4253943_4254153_-	NA	NA|1321aa|up_8|NZ_CP014348.1_4254207_4258170_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP014348.1_4258209_4258848_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP014348.1_4259135_4260227_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP014348.1_4260226_4260919_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP014348.1_4260930_4261317_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP014348.1_4261324_4262125_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP014348.1_4262134_4262725_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP014348.1_4262735_4263230_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP014348.1_4263250_4264579_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP014348.1_4265381_4265978_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP014348.1_4265998_4266226_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP014348.1_4266263_4267505_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP014348.1_4267797_4269054_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP014348.1_4269314_4270235_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP014348.1_4270234_4270540_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP014348.1_4270691_4271291_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP014348.1_4271287_4273834_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP014348.1_4273833_4275006_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP014348.1_4275135_4275828_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_001566335.1_ASM156633v1	NZ_CP014348	Escherichia coli str. K-12 substr. MG1655 strain JW5437-1 chromosome, complete genome	9	4527158-4527302	9	CRISPRCasFinder	no		WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4	NA,NA	NA|330aa|up_9|NZ_CP014348.1_4515056_4516046_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP014348.1_4516442_4517351_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP014348.1_4517542_4519564_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP014348.1_4520142_4520820_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP014348.1_4520812_4521568_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP014348.1_4521554_4522709_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP014348.1_4522705_4523746_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP014348.1_4523832_4525122_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP014348.1_4525180_4525657_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP014348.1_4525808_4527092_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP014348.1_4527325_4529587_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP014348.1_4529769_4531203_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP014348.1_4531278_4532331_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP014348.1_4532514_4533468_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP014348.1_4533508_4534504_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP014348.1_4534658_4535477_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP014348.1_4535477_4536536_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP014348.1_4536538_4537228_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP014348.1_4537227_4538001_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP014348.1_4538167_4538317_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
