assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001577795.1_ASM157779v1	NZ_CP010888	Clostridioides difficile strain 08ACD0030 chromosome, complete genome	1	632887-632976	1	CRISPRCasFinder	no		cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TGTGCGTTAGCACTTTAAGCAACAGAAT	28	1	5	632915-632948|632915-632948|632915-632948|632915-632948|632915-632948	NZ_CP010888.1_519514-519547|NZ_CP010888.1_533806-533839|NZ_CP010888.1_639843-639876|NZ_CP010888.1_655844-655877|NZ_CP010888.1_3567834-3567801	NA	1	1	Orphan	cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|226aa|down_7|NZ_CP010888.1_665313_665991_+	NA|208aa|up_9|NZ_CP010888.1_623328_623952_+	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|316aa|up_8|NZ_CP010888.1_624029_624977_+	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|114aa|up_7|NZ_CP010888.1_624997_625339_+	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|278aa|up_6|NZ_CP010888.1_625458_626292_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_5|NZ_CP010888.1_626279_627146_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_4|NZ_CP010888.1_627139_627943_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_3|NZ_CP010888.1_627974_628706_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_2|NZ_CP010888.1_628825_629257_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_1|NZ_CP010888.1_629285_629678_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|251aa|up_0|NZ_CP010888.1_630136_630889_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|down_0|NZ_CP010888.1_643401_644586_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|down_1|NZ_CP010888.1_644958_647310_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|down_2|NZ_CP010888.1_647331_647871_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|280aa|down_3|NZ_CP010888.1_660999_661839_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_4|NZ_CP010888.1_661835_663017_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|301aa|down_5|NZ_CP010888.1_663320_664223_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_6|NZ_CP010888.1_664244_665324_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_7|NZ_CP010888.1_665313_665991_+	NA	NA|72aa|down_8|NZ_CP010888.1_666033_666249_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_9|NZ_CP010888.1_666277_667357_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated
GCF_001577795.1_ASM157779v1	NZ_CP010888	Clostridioides difficile strain 08ACD0030 chromosome, complete genome	2	648352-648430	2	CRISPRCasFinder	no		cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TGTTTATAATGTGGATAATATTTAA	25	0	0	NA	NA	NA	1	1	Orphan	cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|226aa|down_4|NZ_CP010888.1_665313_665991_+	NA|278aa|up_9|NZ_CP010888.1_625458_626292_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_8|NZ_CP010888.1_626279_627146_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_7|NZ_CP010888.1_627139_627943_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_6|NZ_CP010888.1_627974_628706_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_5|NZ_CP010888.1_628825_629257_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_4|NZ_CP010888.1_629285_629678_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|251aa|up_3|NZ_CP010888.1_630136_630889_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|up_2|NZ_CP010888.1_643401_644586_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|up_1|NZ_CP010888.1_644958_647310_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|up_0|NZ_CP010888.1_647331_647871_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|280aa|down_0|NZ_CP010888.1_660999_661839_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_1|NZ_CP010888.1_661835_663017_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|301aa|down_2|NZ_CP010888.1_663320_664223_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_3|NZ_CP010888.1_664244_665324_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_4|NZ_CP010888.1_665313_665991_+	NA	NA|72aa|down_5|NZ_CP010888.1_666033_666249_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_6|NZ_CP010888.1_666277_667357_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated	NA|251aa|down_7|NZ_CP010888.1_667356_668109_+	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	NA|186aa|down_8|NZ_CP010888.1_668109_668667_+	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase	NA|449aa|down_9|NZ_CP010888.1_668836_670183_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCF_001577795.1_ASM157779v1	NZ_CP010888	Clostridioides difficile strain 08ACD0030 chromosome, complete genome	3	650364-650453	3	CRISPRCasFinder	no		cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TGTGCGTTAGCACTTTAAGCAACAGAAT	28	1	5	650392-650425|650392-650425|650392-650425|650392-650425|650392-650425	NZ_CP010888.1_519514-519547|NZ_CP010888.1_533806-533839|NZ_CP010888.1_639843-639876|NZ_CP010888.1_655844-655877|NZ_CP010888.1_3567834-3567801	NA	1	1	Orphan	cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|226aa|down_4|NZ_CP010888.1_665313_665991_+	NA|278aa|up_9|NZ_CP010888.1_625458_626292_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_8|NZ_CP010888.1_626279_627146_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_7|NZ_CP010888.1_627139_627943_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_6|NZ_CP010888.1_627974_628706_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_5|NZ_CP010888.1_628825_629257_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_4|NZ_CP010888.1_629285_629678_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|251aa|up_3|NZ_CP010888.1_630136_630889_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|up_2|NZ_CP010888.1_643401_644586_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|up_1|NZ_CP010888.1_644958_647310_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|up_0|NZ_CP010888.1_647331_647871_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|280aa|down_0|NZ_CP010888.1_660999_661839_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_1|NZ_CP010888.1_661835_663017_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|301aa|down_2|NZ_CP010888.1_663320_664223_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_3|NZ_CP010888.1_664244_665324_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_4|NZ_CP010888.1_665313_665991_+	NA	NA|72aa|down_5|NZ_CP010888.1_666033_666249_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_6|NZ_CP010888.1_666277_667357_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated	NA|251aa|down_7|NZ_CP010888.1_667356_668109_+	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	NA|186aa|down_8|NZ_CP010888.1_668109_668667_+	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase	NA|449aa|down_9|NZ_CP010888.1_668836_670183_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCF_001577795.1_ASM157779v1	NZ_CP010888	Clostridioides difficile strain 08ACD0030 chromosome, complete genome	4	1661474-1661831	1,4,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTAGATTAACTATATGGAATGTAAATT,GTTTTAGATTAACTATATGGAATGTAAATT,GTTTTAGATTAACTATATGGAATGTAAAT	30,30,29	0	0	NA	NA	NA:NA:I-A	4,5,5	5	Orphan	cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|134aa|up_9|NZ_CP010888.1_1655922_1656324_+,NA|116aa|up_8|NZ_CP010888.1_1656317_1656665_+,NA|146aa|up_6|NZ_CP010888.1_1657082_1657520_+,NA|59aa|up_5|NZ_CP010888.1_1657512_1657689_+,NA|86aa|up_2|NZ_CP010888.1_1659544_1659802_+,NA|54aa|up_0|NZ_CP010888.1_1660567_1660729_+,NA|63aa|down_0|NZ_CP010888.1_1661991_1662180_+,NA|52aa|down_2|NZ_CP010888.1_1663217_1663373_+,NA|118aa|down_4|NZ_CP010888.1_1664704_1665058_+,NA|51aa|down_5|NZ_CP010888.1_1665090_1665243_+	NA|134aa|up_9|NZ_CP010888.1_1655922_1656324_+	NA	NA|116aa|up_8|NZ_CP010888.1_1656317_1656665_+	NA	NA|142aa|up_7|NZ_CP010888.1_1656664_1657090_+	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component	NA|146aa|up_6|NZ_CP010888.1_1657082_1657520_+	NA	NA|59aa|up_5|NZ_CP010888.1_1657512_1657689_+	NA	NA|437aa|up_4|NZ_CP010888.1_1657689_1659000_+	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|157aa|up_3|NZ_CP010888.1_1659021_1659492_+	pfam09393, DUF2001, Phage tail tube protein	NA|86aa|up_2|NZ_CP010888.1_1659544_1659802_+	NA	NA|147aa|up_1|NZ_CP010888.1_1659806_1660247_+	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|54aa|up_0|NZ_CP010888.1_1660567_1660729_+	NA	NA|63aa|down_0|NZ_CP010888.1_1661991_1662180_+	NA	NA|289aa|down_1|NZ_CP010888.1_1662298_1663165_+	smart01040, Bro-N, BRO family, N-terminal domain	NA|52aa|down_2|NZ_CP010888.1_1663217_1663373_+	NA	NA|71aa|down_3|NZ_CP010888.1_1663791_1664004_-	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|118aa|down_4|NZ_CP010888.1_1664704_1665058_+	NA	NA|51aa|down_5|NZ_CP010888.1_1665090_1665243_+	NA	NA|176aa|down_6|NZ_CP010888.1_1666219_1666747_+	pfam11611, DUF4352, Domain of unknown function (DUF4352)	NA|256aa|down_7|NZ_CP010888.1_1666885_1667653_+	pfam14471, DUF4428, Domain of unknown function (DUF4428)	NA|791aa|down_8|NZ_CP010888.1_1667718_1670091_+	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|232aa|down_9|NZ_CP010888.1_1670106_1670802_+	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional
GCF_001577795.1_ASM157779v1	NZ_CP010888	Clostridioides difficile strain 08ACD0030 chromosome, complete genome	5	1663450-1663739	2	CRT	no		cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTTTATATTAACTANGTGGTATGTAAA	27	0	0	NA	NA	I-A	4	4	Orphan	cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|146aa|up_9|NZ_CP010888.1_1657082_1657520_+,NA|59aa|up_8|NZ_CP010888.1_1657512_1657689_+,NA|86aa|up_5|NZ_CP010888.1_1659544_1659802_+,NA|54aa|up_3|NZ_CP010888.1_1660567_1660729_+,NA|63aa|up_2|NZ_CP010888.1_1661991_1662180_+,NA|52aa|up_0|NZ_CP010888.1_1663217_1663373_+,NA|118aa|down_1|NZ_CP010888.1_1664704_1665058_+,NA|51aa|down_2|NZ_CP010888.1_1665090_1665243_+	NA|146aa|up_9|NZ_CP010888.1_1657082_1657520_+	NA	NA|59aa|up_8|NZ_CP010888.1_1657512_1657689_+	NA	NA|437aa|up_7|NZ_CP010888.1_1657689_1659000_+	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|157aa|up_6|NZ_CP010888.1_1659021_1659492_+	pfam09393, DUF2001, Phage tail tube protein	NA|86aa|up_5|NZ_CP010888.1_1659544_1659802_+	NA	NA|147aa|up_4|NZ_CP010888.1_1659806_1660247_+	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|54aa|up_3|NZ_CP010888.1_1660567_1660729_+	NA	NA|63aa|up_2|NZ_CP010888.1_1661991_1662180_+	NA	NA|289aa|up_1|NZ_CP010888.1_1662298_1663165_+	smart01040, Bro-N, BRO family, N-terminal domain	NA|52aa|up_0|NZ_CP010888.1_1663217_1663373_+	NA	NA|71aa|down_0|NZ_CP010888.1_1663791_1664004_-	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|118aa|down_1|NZ_CP010888.1_1664704_1665058_+	NA	NA|51aa|down_2|NZ_CP010888.1_1665090_1665243_+	NA	NA|176aa|down_3|NZ_CP010888.1_1666219_1666747_+	pfam11611, DUF4352, Domain of unknown function (DUF4352)	NA|256aa|down_4|NZ_CP010888.1_1666885_1667653_+	pfam14471, DUF4428, Domain of unknown function (DUF4428)	NA|791aa|down_5|NZ_CP010888.1_1667718_1670091_+	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|232aa|down_6|NZ_CP010888.1_1670106_1670802_+	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|657aa|down_7|NZ_CP010888.1_1670794_1672765_+	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|87aa|down_8|NZ_CP010888.1_1672778_1673039_+	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|140aa|down_9|NZ_CP010888.1_1673043_1673463_+	pfam10934, DUF2634, Protein of unknown function (DUF2634)
GCF_001577795.1_ASM157779v1	NZ_CP010888	Clostridioides difficile strain 08ACD0030 chromosome, complete genome	6	1665537-1666097	2,5,3	PILER-CR,CRISPRCasFinder,CRT	no		cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTGAAGAATAACATGAGATGTTTTTAAAT,GTTGAAGAATAACATGAGATGTTTTTAAAT,GTTGAAGAATAACATGAGATGTTTTTAAAT	30,30,30	0	0	NA	NA	III-B:III-B:III-B	7,8,8	8	Orphan	cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|86aa|up_8|NZ_CP010888.1_1659544_1659802_+,NA|54aa|up_6|NZ_CP010888.1_1660567_1660729_+,NA|63aa|up_5|NZ_CP010888.1_1661991_1662180_+,NA|52aa|up_3|NZ_CP010888.1_1663217_1663373_+,NA|118aa|up_1|NZ_CP010888.1_1664704_1665058_+,NA|51aa|up_0|NZ_CP010888.1_1665090_1665243_+,NA	NA|157aa|up_9|NZ_CP010888.1_1659021_1659492_+	pfam09393, DUF2001, Phage tail tube protein	NA|86aa|up_8|NZ_CP010888.1_1659544_1659802_+	NA	NA|147aa|up_7|NZ_CP010888.1_1659806_1660247_+	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|54aa|up_6|NZ_CP010888.1_1660567_1660729_+	NA	NA|63aa|up_5|NZ_CP010888.1_1661991_1662180_+	NA	NA|289aa|up_4|NZ_CP010888.1_1662298_1663165_+	smart01040, Bro-N, BRO family, N-terminal domain	NA|52aa|up_3|NZ_CP010888.1_1663217_1663373_+	NA	NA|71aa|up_2|NZ_CP010888.1_1663791_1664004_-	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|118aa|up_1|NZ_CP010888.1_1664704_1665058_+	NA	NA|51aa|up_0|NZ_CP010888.1_1665090_1665243_+	NA	NA|176aa|down_0|NZ_CP010888.1_1666219_1666747_+	pfam11611, DUF4352, Domain of unknown function (DUF4352)	NA|256aa|down_1|NZ_CP010888.1_1666885_1667653_+	pfam14471, DUF4428, Domain of unknown function (DUF4428)	NA|791aa|down_2|NZ_CP010888.1_1667718_1670091_+	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|232aa|down_3|NZ_CP010888.1_1670106_1670802_+	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|657aa|down_4|NZ_CP010888.1_1670794_1672765_+	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|87aa|down_5|NZ_CP010888.1_1672778_1673039_+	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|140aa|down_6|NZ_CP010888.1_1673043_1673463_+	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|350aa|down_7|NZ_CP010888.1_1673463_1674513_+	pfam04865, Baseplate_J, Baseplate J-like protein	NA|206aa|down_8|NZ_CP010888.1_1674505_1675123_+	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)	NA|342aa|down_9|NZ_CP010888.1_1675134_1676160_+	pfam12571, DUF3751, Phage tail-collar fibre protein
GCF_001577795.1_ASM157779v1	NZ_CP010888	Clostridioides difficile strain 08ACD0030 chromosome, complete genome	7	1823853-1824606	3,6,4	PILER-CR,CRISPRCasFinder,CRT	no		cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTATATTAACTAAGTGGTATGTAAAG,GTTTTATATTAACTAAGTGGTATGTAAAG,GTTTTATATTAACTAAGTGGTATGTAAAG	29,29,29	0	0	NA	NA	I-A:I-A:I-A	11,11,11	11	Orphan	cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|51aa|up_0|NZ_CP010888.1_1823046_1823199_+,NA|52aa|down_1|NZ_CP010888.1_1825795_1825951_+,NA|84aa|down_2|NZ_CP010888.1_1826196_1826448_+,NA|70aa|down_3|NZ_CP010888.1_1827089_1827299_+,NA|128aa|down_4|NZ_CP010888.1_1827667_1828051_-,NA|110aa|down_5|NZ_CP010888.1_1828177_1828507_+,NA|70aa|down_6|NZ_CP010888.1_1828703_1828913_+,NA|106aa|down_7|NZ_CP010888.1_1829903_1830221_-	NA|271aa|up_9|NZ_CP010888.1_1811440_1812253_+	cd09009, PNP-EcPNPII_like, purine nucleoside phosphorylases similar to human PNP and Escherichia coli PNP-II (XapA)	NA|442aa|up_8|NZ_CP010888.1_1812456_1813782_+	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase	NA|360aa|up_7|NZ_CP010888.1_1813994_1815074_+	pfam02618, YceG, YceG-like family	NA|225aa|up_6|NZ_CP010888.1_1815245_1815920_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|416aa|up_5|NZ_CP010888.1_1815906_1817154_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|555aa|up_4|NZ_CP010888.1_1817225_1818890_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|95aa|up_3|NZ_CP010888.1_1818986_1819271_-	PRK05803, PRK05803, RNA polymerase sporulation sigma factor SigK	NA|506aa|up_2|NZ_CP010888.1_1819293_1820811_-	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|274aa|up_1|NZ_CP010888.1_1820935_1821757_-	sd00006, TPR, Tetratricopeptide repeat	NA|51aa|up_0|NZ_CP010888.1_1823046_1823199_+	NA	NA|75aa|down_0|NZ_CP010888.1_1824892_1825117_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|52aa|down_1|NZ_CP010888.1_1825795_1825951_+	NA	NA|84aa|down_2|NZ_CP010888.1_1826196_1826448_+	NA	NA|70aa|down_3|NZ_CP010888.1_1827089_1827299_+	NA	NA|128aa|down_4|NZ_CP010888.1_1827667_1828051_-	NA	NA|110aa|down_5|NZ_CP010888.1_1828177_1828507_+	NA	NA|70aa|down_6|NZ_CP010888.1_1828703_1828913_+	NA	NA|106aa|down_7|NZ_CP010888.1_1829903_1830221_-	NA	NA|130aa|down_8|NZ_CP010888.1_1831278_1831668_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|170aa|down_9|NZ_CP010888.1_1831987_1832497_+	pfam04892, VanZ, VanZ like family
GCF_001577795.1_ASM157779v1	NZ_CP010888	Clostridioides difficile strain 08ACD0030 chromosome, complete genome	8	2036281-2036905	4,7,5	PILER-CR,CRISPRCasFinder,CRT	no	DinG	cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Type IV-A	GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	8,9,8	9	Orphan	cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|82aa|up_1|NZ_CP010888.1_2034776_2035022_-,NA|35aa|up_0|NZ_CP010888.1_2035646_2035751_+,NA|80aa|down_4|NZ_CP010888.1_2044028_2044268_+,NA|59aa|down_5|NZ_CP010888.1_2044455_2044632_-	NA|195aa|up_9|NZ_CP010888.1_2024454_2025039_-	pfam00882, Zn_dep_PLPC, Zinc dependent phospholipase C	NA|477aa|up_8|NZ_CP010888.1_2025238_2026669_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|315aa|up_7|NZ_CP010888.1_2026986_2027931_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|312aa|up_6|NZ_CP010888.1_2028201_2029137_-	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|198aa|up_5|NZ_CP010888.1_2029255_2029849_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|143aa|up_4|NZ_CP010888.1_2029955_2030384_+	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ	NA|223aa|up_3|NZ_CP010888.1_2030450_2031119_+	cd01994, Alpha_ANH_like_IV, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	NA|452aa|up_2|NZ_CP010888.1_2031236_2032592_-	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|82aa|up_1|NZ_CP010888.1_2034776_2035022_-	NA	NA|35aa|up_0|NZ_CP010888.1_2035646_2035751_+	NA	NA|578aa|down_0|NZ_CP010888.1_2037230_2038964_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|278aa|down_1|NZ_CP010888.1_2039203_2040037_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|745aa|down_2|NZ_CP010888.1_2040067_2042302_-	cd01948, EAL, EAL domain	NA|270aa|down_3|NZ_CP010888.1_2043085_2043895_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|80aa|down_4|NZ_CP010888.1_2044028_2044268_+	NA	NA|59aa|down_5|NZ_CP010888.1_2044455_2044632_-	NA	NA|225aa|down_6|NZ_CP010888.1_2045136_2045811_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|185aa|down_7|NZ_CP010888.1_2046030_2046585_-	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases	NA|122aa|down_8|NZ_CP010888.1_2046662_2047028_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|262aa|down_9|NZ_CP010888.1_2047492_2048278_+	COG3393, COG3393, Predicted acetyltransferase [General function prediction only]
GCF_001577795.1_ASM157779v1	NZ_CP010888	Clostridioides difficile strain 08ACD0030 chromosome, complete genome	9	2176153-2176976	5,8,6	PILER-CR,CRISPRCasFinder,CRT	no	cas14j	cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	GTTTTATATTAACTATATGGAATGTAAAT,GTTTTATATTAACTATATGGAATGTAAAT,GTTTTATATTAACTATATGGAATGTAAAT	29,29,29	1	1	2176711-2176747	NZ_CP010888.1_2429806-2429842	I-A:I-A:I-A	11,12,12	12	TypeV	cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|50aa|up_9|NZ_CP010888.1_2164980_2165130_+,NA|190aa|up_7|NZ_CP010888.1_2166044_2166614_+,NA|61aa|up_4|NZ_CP010888.1_2169563_2169746_-,NA|95aa|down_0|NZ_CP010888.1_2177133_2177418_-,NA|330aa|down_5|NZ_CP010888.1_2181867_2182857_+	NA|50aa|up_9|NZ_CP010888.1_2164980_2165130_+	NA	NA|300aa|up_8|NZ_CP010888.1_2165140_2166040_+	TIGR02163, Ferredoxin-type_protein_NapH_homolog, ferredoxin-type protein, NapH/MauN family	NA|190aa|up_7|NZ_CP010888.1_2166044_2166614_+	NA	NA|216aa|up_6|NZ_CP010888.1_2166780_2167428_-	pfam02589, LUD_dom, LUD domain	NA|305aa|up_5|NZ_CP010888.1_2167817_2168732_-	pfam11155, DUF2935, Domain of unknown function (DUF2935)	NA|61aa|up_4|NZ_CP010888.1_2169563_2169746_-	NA	NA|283aa|up_3|NZ_CP010888.1_2170156_2171005_-	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|276aa|up_2|NZ_CP010888.1_2171023_2171851_-	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|308aa|up_1|NZ_CP010888.1_2171825_2172749_-	pfam10728, DUF2520, Domain of unknown function (DUF2520)	NA|698aa|up_0|NZ_CP010888.1_2173400_2175494_+	cd01948, EAL, EAL domain	NA|95aa|down_0|NZ_CP010888.1_2177133_2177418_-	NA	NA|273aa|down_1|NZ_CP010888.1_2177624_2178443_+	cd04782, HTH_BltR, Helix-Turn-Helix DNA binding domain of the BltR transcription regulator	NA|707aa|down_2|NZ_CP010888.1_2178575_2180696_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|76aa|down_3|NZ_CP010888.1_2180721_2180949_-	pfam04023, FeoA, FeoA domain	NA|147aa|down_4|NZ_CP010888.1_2181275_2181716_-	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|330aa|down_5|NZ_CP010888.1_2181867_2182857_+	NA	NA|403aa|down_6|NZ_CP010888.1_2183333_2184542_+	PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional	NA|294aa|down_7|NZ_CP010888.1_2184602_2185484_-	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins	NA|315aa|down_8|NZ_CP010888.1_2185869_2186814_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|182aa|down_9|NZ_CP010888.1_2187036_2187582_+	cd01046, Rubrerythrin_like, rubrerythrin-like, diiron-binding domain
GCF_001577795.1_ASM157779v1	NZ_CP010888	Clostridioides difficile strain 08ACD0030 chromosome, complete genome	10	2353654-2354737	6,9,7	PILER-CR,CRISPRCasFinder,CRT	no	cas14j	cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	GTTTTATATTAACTATGTGGTATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	16,16,16	16	TypeV	cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|96aa|down_0|NZ_CP010888.1_2355145_2355433_+,NA|59aa|down_5|NZ_CP010888.1_2361823_2362000_-,NA|341aa|down_6|NZ_CP010888.1_2362574_2363597_+,NA|258aa|down_8|NZ_CP010888.1_2364503_2365277_+	NA|329aa|up_9|NZ_CP010888.1_2335871_2336858_-	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|577aa|up_8|NZ_CP010888.1_2337341_2339072_+	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|172aa|up_7|NZ_CP010888.1_2339596_2340112_+	pfam13787, HXXEE, Protein of unknown function with HXXEE motif	NA|825aa|up_6|NZ_CP010888.1_2340914_2343389_+	PRK00451, PRK00451, aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA|486aa|up_5|NZ_CP010888.1_2343388_2344846_+	PRK04366, PRK04366, aminomethyl-transferring glycine dehydrogenase subunit GcvPB	NA|786aa|up_4|NZ_CP010888.1_2345268_2347626_+	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7	NA|106aa|up_3|NZ_CP010888.1_2347711_2348029_-	pfam06865, DUF1255, Protein of unknown function (DUF1255)	cas14j|373aa|up_2|NZ_CP010888.1_2349047_2350166_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|252aa|up_1|NZ_CP010888.1_2350341_2351097_+	pfam12395, DUF3658, Protein of unknown function	NA|424aa|up_0|NZ_CP010888.1_2351735_2353007_-	cd01303, GDEase, Guanine deaminase (GDEase)	NA|96aa|down_0|NZ_CP010888.1_2355145_2355433_+	NA	NA|184aa|down_1|NZ_CP010888.1_2355971_2356523_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|321aa|down_2|NZ_CP010888.1_2356713_2357676_+	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|615aa|down_3|NZ_CP010888.1_2357970_2359815_+	cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	NA|195aa|down_4|NZ_CP010888.1_2360136_2360721_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|59aa|down_5|NZ_CP010888.1_2361823_2362000_-	NA	NA|341aa|down_6|NZ_CP010888.1_2362574_2363597_+	NA	NA|296aa|down_7|NZ_CP010888.1_2363610_2364498_+	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component	NA|258aa|down_8|NZ_CP010888.1_2364503_2365277_+	NA	NA|242aa|down_9|NZ_CP010888.1_2365388_2366114_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_001577795.1_ASM157779v1	NZ_CP010888	Clostridioides difficile strain 08ACD0030 chromosome, complete genome	11	2692821-2692988	7	PILER-CR	no	csa3	cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Type I-A	AGTTTTATATCAACTATGTGGTATGTAAAGTTTTTA	36	0	0	NA	NA	I-A	2	2	Orphan	cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|133aa|up_3|NZ_CP010888.1_2689330_2689729_-,NA|59aa|up_1|NZ_CP010888.1_2691860_2692037_+,NA|55aa|down_1|NZ_CP010888.1_2694534_2694699_-,NA|17aa|down_5|NZ_CP010888.1_2697124_2697175_+	NA|119aa|up_9|NZ_CP010888.1_2680549_2680906_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|204aa|up_8|NZ_CP010888.1_2682305_2682917_+	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|113aa|up_7|NZ_CP010888.1_2683214_2683553_+	pfam12650, DUF3784, Domain of unknown function (DUF3784)	NA|479aa|up_6|NZ_CP010888.1_2683959_2685396_-	PRK14328, PRK14328, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	NA|487aa|up_5|NZ_CP010888.1_2685643_2687104_-	NF033435, S-layer_Clost, S-layer protein SlpA	NA|184aa|up_4|NZ_CP010888.1_2687930_2688482_-	pfam17099, TrpP, Tryptophan transporter TrpP	NA|133aa|up_3|NZ_CP010888.1_2689330_2689729_-	NA	NA|162aa|up_2|NZ_CP010888.1_2690084_2690570_-	pfam08239, SH3_3, Bacterial SH3 domain	NA|59aa|up_1|NZ_CP010888.1_2691860_2692037_+	NA	NA|67aa|up_0|NZ_CP010888.1_2692262_2692463_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|61aa|down_0|NZ_CP010888.1_2693213_2693396_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|55aa|down_1|NZ_CP010888.1_2694534_2694699_-	NA	NA|111aa|down_2|NZ_CP010888.1_2695240_2695573_-	pfam02627, CMD, Carboxymuconolactone decarboxylase family	NA|214aa|down_3|NZ_CP010888.1_2695816_2696458_-	COG5658, COG5658, Predicted integral membrane protein [Function unknown]	csa3|98aa|down_4|NZ_CP010888.1_2696438_2696732_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|17aa|down_5|NZ_CP010888.1_2697124_2697175_+	NA	NA|251aa|down_6|NZ_CP010888.1_2697700_2698453_-	PRK10621, PRK10621, hypothetical protein; Provisional	NA|552aa|down_7|NZ_CP010888.1_2698511_2700167_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|360aa|down_8|NZ_CP010888.1_2701438_2702518_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|219aa|down_9|NZ_CP010888.1_2702601_2703258_-	COG1309, AcrR, Transcriptional regulator [Transcription]
GCF_001577795.1_ASM157779v1	NZ_CP010888	Clostridioides difficile strain 08ACD0030 chromosome, complete genome	12	3074062-3074743	10,8,8	CRISPRCasFinder,CRT,PILER-CR	no		cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTTTACATTCCATATAGTTAATCTAAAAC,TTTACATTCCATATAGTTAATCTAAAAC,GTTTTAGATTAACTATATGGAATGTAAA	29,28,28	0	0	NA	NA	NA:NA:NA	10,10,9	10	Orphan	cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|138aa|up_5|NZ_CP010888.1_3070314_3070728_+,NA|99aa|up_4|NZ_CP010888.1_3070746_3071043_+,NA|106aa|up_3|NZ_CP010888.1_3071325_3071643_+,NA|155aa|up_2|NZ_CP010888.1_3071778_3072243_+,NA|54aa|up_1|NZ_CP010888.1_3072571_3072733_-,NA|51aa|up_0|NZ_CP010888.1_3073718_3073871_-,NA|51aa|down_1|NZ_CP010888.1_3076126_3076279_-,NA|108aa|down_2|NZ_CP010888.1_3076552_3076876_-,NA|85aa|down_3|NZ_CP010888.1_3076911_3077166_-,NA|57aa|down_6|NZ_CP010888.1_3080949_3081120_+,NA|59aa|down_9|NZ_CP010888.1_3082822_3082999_+	NA|687aa|up_9|NZ_CP010888.1_3065944_3068005_-	cd16923, HATPase_VanS-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Enterococcus faecium VanS	NA|231aa|up_8|NZ_CP010888.1_3068200_3068893_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|125aa|up_7|NZ_CP010888.1_3069504_3069879_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|78aa|up_6|NZ_CP010888.1_3070097_3070331_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|138aa|up_5|NZ_CP010888.1_3070314_3070728_+	NA	NA|99aa|up_4|NZ_CP010888.1_3070746_3071043_+	NA	NA|106aa|up_3|NZ_CP010888.1_3071325_3071643_+	NA	NA|155aa|up_2|NZ_CP010888.1_3071778_3072243_+	NA	NA|54aa|up_1|NZ_CP010888.1_3072571_3072733_-	NA	NA|51aa|up_0|NZ_CP010888.1_3073718_3073871_-	NA	NA|308aa|down_0|NZ_CP010888.1_3075009_3075933_-	pfam09851, SHOCT, Short C-terminal domain	NA|51aa|down_1|NZ_CP010888.1_3076126_3076279_-	NA	NA|108aa|down_2|NZ_CP010888.1_3076552_3076876_-	NA	NA|85aa|down_3|NZ_CP010888.1_3076911_3077166_-	NA	NA|126aa|down_4|NZ_CP010888.1_3078884_3079262_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|165aa|down_5|NZ_CP010888.1_3080066_3080561_+	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G	NA|57aa|down_6|NZ_CP010888.1_3080949_3081120_+	NA	NA|117aa|down_7|NZ_CP010888.1_3081947_3082298_+	pfam12676, DUF3796, Protein of unknown function (DUF3796)	NA|67aa|down_8|NZ_CP010888.1_3082299_3082500_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|59aa|down_9|NZ_CP010888.1_3082822_3082999_+	NA
GCF_001577795.1_ASM157779v1	NZ_CP010888	Clostridioides difficile strain 08ACD0030 chromosome, complete genome	13	3237711-3237868	9	PILER-CR	no	cas3,cas5,cas7,cas6	cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	AGGTTTAAGATTAACTAAGTGGA---------TTTCA	37	0	0	NA	NA	NA	2	2	Unclear	cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|492aa|down_3|NZ_CP010888.1_3242294_3243770_-,NA|59aa|down_5|NZ_CP010888.1_3244612_3244789_-	NA|448aa|up_9|NZ_CP010888.1_3230167_3231511_-	pfam06898, YqfD, Putative stage IV sporulation protein YqfD	NA|79aa|up_8|NZ_CP010888.1_3231523_3231760_-	pfam07873, YabP, YabP family	NA|188aa|up_7|NZ_CP010888.1_3231972_3232536_-	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site	NA|166aa|up_6|NZ_CP010888.1_3232728_3233226_-	cd15904, TSPO_MBR, Translocator protein (TSPO)/peripheral-type benzodiazepine receptor (MBR) family	NA|148aa|up_5|NZ_CP010888.1_3233336_3233780_-	pfam09424, YqeY, Yqey-like protein	NA|60aa|up_4|NZ_CP010888.1_3233809_3233989_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|117aa|up_3|NZ_CP010888.1_3234151_3234502_-	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides	NA|433aa|up_2|NZ_CP010888.1_3234544_3235843_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|253aa|up_1|NZ_CP010888.1_3235844_3236603_-	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|316aa|up_0|NZ_CP010888.1_3236621_3237569_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	cas3|803aa|down_0|NZ_CP010888.1_3238010_3240419_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|266aa|down_1|NZ_CP010888.1_3240445_3241243_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|339aa|down_2|NZ_CP010888.1_3241258_3242275_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	NA|492aa|down_3|NZ_CP010888.1_3242294_3243770_-	NA	cas6|246aa|down_4|NZ_CP010888.1_3243774_3244512_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|59aa|down_5|NZ_CP010888.1_3244612_3244789_-	NA	NA|370aa|down_6|NZ_CP010888.1_3245222_3246332_+	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|256aa|down_7|NZ_CP010888.1_3246361_3247129_+	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain	NA|458aa|down_8|NZ_CP010888.1_3247316_3248690_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|312aa|down_9|NZ_CP010888.1_3248725_3249661_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
GCF_001577795.1_ASM157779v1	NZ_CP010888	Clostridioides difficile strain 08ACD0030 chromosome, complete genome	14	3319613-3319970	10,11,9	PILER-CR,CRISPRCasFinder,CRT	no		cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTATATTAACTATATGGAATGTAAAT,ATTTACATTCCATATAGTTAATATAAAAC,ATTTACATTCCATATAGTTAATATAAAAC	29,29,29	0	0	NA	NA	I-A:I-A:I-A	5,5,5	5	Orphan	cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|53aa|down_0|NZ_CP010888.1_3320255_3320414_-	NA|240aa|up_9|NZ_CP010888.1_3307172_3307892_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|253aa|up_8|NZ_CP010888.1_3307938_3308697_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|451aa|up_7|NZ_CP010888.1_3308827_3310180_-	cd05298, GH4_GlvA_pagL_like, Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases	NA|517aa|up_6|NZ_CP010888.1_3310276_3311827_-	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component	NA|272aa|up_5|NZ_CP010888.1_3311879_3312695_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|161aa|up_4|NZ_CP010888.1_3312715_3313198_-	pfam00358, PTS_EIIA_1, phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1	NA|127aa|up_3|NZ_CP010888.1_3313481_3313862_-	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase	NA|406aa|up_2|NZ_CP010888.1_3313956_3315174_-	PRK08198, PRK08198, threonine dehydratase; Provisional	NA|543aa|up_1|NZ_CP010888.1_3315831_3317460_+	TIGR03801, For_A_Pyridoxal-5-_Phosphate, aspartate 4-decarboxylase	NA|332aa|up_0|NZ_CP010888.1_3317580_3318576_+	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase	NA|53aa|down_0|NZ_CP010888.1_3320255_3320414_-	NA	NA|457aa|down_1|NZ_CP010888.1_3320772_3322143_-	NF033435, S-layer_Clost, S-layer protein SlpA	NA|91aa|down_2|NZ_CP010888.1_3323194_3323467_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|223aa|down_3|NZ_CP010888.1_3323784_3324453_-	pfam04892, VanZ, VanZ like family	NA|807aa|down_4|NZ_CP010888.1_3325288_3327709_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|117aa|down_5|NZ_CP010888.1_3328062_3328413_-	pfam02410, RsfS, Ribosomal silencing factor during starvation	NA|191aa|down_6|NZ_CP010888.1_3328529_3329102_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|230aa|down_7|NZ_CP010888.1_3329102_3329792_-	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase	NA|213aa|down_8|NZ_CP010888.1_3330067_3330706_+	PRK00117, recX, recombination regulator RecX; Reviewed	NA|668aa|down_9|NZ_CP010888.1_3330858_3332862_+	PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme
GCF_001577795.1_ASM157779v1	NZ_CP010888	Clostridioides difficile strain 08ACD0030 chromosome, complete genome	15	3554826-3555151	12	CRISPRCasFinder	no		cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTACCATCTATTTGTTGCCATCCTGT	26	0	0	NA	NA	NA	5	5	Orphan	cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|107aa|down_2|NZ_CP010888.1_3558014_3558335_-,NA|664aa|down_3|NZ_CP010888.1_3558324_3560316_-,NA|458aa|down_7|NZ_CP010888.1_3571102_3572476_-	NA|218aa|up_9|NZ_CP010888.1_3539828_3540482_-	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|448aa|up_8|NZ_CP010888.1_3540983_3542327_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|455aa|up_7|NZ_CP010888.1_3542505_3543870_+	cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases	NA|622aa|up_6|NZ_CP010888.1_3544047_3545913_-	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|406aa|up_5|NZ_CP010888.1_3546148_3547366_-	cd17396, MFS_YdiM_like, Inner membrane transport protein YdiM and similar proteins of the Major Facilitator Superfamily of transporters	NA|288aa|up_4|NZ_CP010888.1_3547565_3548429_-	PRK12548, PRK12548, shikimate dehydrogenase	NA|641aa|up_3|NZ_CP010888.1_3548510_3550433_-	TIGR03997, NADH:flavin_oxidoreductase, mycofactocin system FadH/OYE family oxidoreductase 2	NA|283aa|up_2|NZ_CP010888.1_3550496_3551345_-	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|294aa|up_1|NZ_CP010888.1_3551757_3552639_+	cd08434, PBP2_GltC_like, The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold	NA|288aa|up_0|NZ_CP010888.1_3552846_3553710_-	cd01027, TOPRIM_RNase_M5_like, TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea	NA|338aa|down_0|NZ_CP010888.1_3555910_3556924_-	PLN02240, PLN02240, UDP-glucose 4-epimerase	NA|290aa|down_1|NZ_CP010888.1_3556947_3557817_-	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|107aa|down_2|NZ_CP010888.1_3558014_3558335_-	NA	NA|664aa|down_3|NZ_CP010888.1_3558324_3560316_-	NA	NA|848aa|down_4|NZ_CP010888.1_3560438_3562982_-	PTZ00121, PTZ00121, MAEBL; Provisional	NA|226aa|down_5|NZ_CP010888.1_3563725_3564403_+	cd05826, Sortase_B, Sortase domain found in class B sortases	NA|313aa|down_6|NZ_CP010888.1_3569792_3570731_+	cd10948, CE4_BsPdaA_like, Catalytic NodB homology domain of Bacillus subtilis polysaccharide deacetylase PdaA, and its bacterial homologs	NA|458aa|down_7|NZ_CP010888.1_3571102_3572476_-	NA	NA|441aa|down_8|NZ_CP010888.1_3572662_3573985_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|235aa|down_9|NZ_CP010888.1_3573977_3574682_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_001577795.1_ASM157779v1	NZ_CP010888	Clostridioides difficile strain 08ACD0030 chromosome, complete genome	16	3609608-3609915	13	CRISPRCasFinder	no		cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTTCTTTTACAGCTTCTAAACATAT	25	0	0	NA	NA	NA	4	4	Orphan	cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|222aa|down_0|NZ_CP010888.1_3611208_3611874_+	NA|205aa|up_9|NZ_CP010888.1_3597768_3598383_-	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|150aa|up_8|NZ_CP010888.1_3598397_3598847_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|736aa|up_7|NZ_CP010888.1_3598871_3601079_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|171aa|up_6|NZ_CP010888.1_3601152_3601665_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|817aa|up_5|NZ_CP010888.1_3601677_3604128_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|555aa|up_4|NZ_CP010888.1_3604140_3605805_-	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|166aa|up_3|NZ_CP010888.1_3606102_3606600_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|460aa|up_2|NZ_CP010888.1_3606628_3608008_-	TIGR03974, six-Cys-in-45_modification_radical_SAM_protein, SCIFF radical SAM maturase	NA|49aa|up_1|NZ_CP010888.1_3608312_3608459_-	TIGR04223, quorum_AgrD, cyclic lactone autoinducer peptide	NA|193aa|up_0|NZ_CP010888.1_3608488_3609067_-	pfam04647, AgrB, Accessory gene regulator B	NA|222aa|down_0|NZ_CP010888.1_3611208_3611874_+	NA	NA|901aa|down_1|NZ_CP010888.1_3612379_3615082_-	cd01948, EAL, EAL domain	NA|517aa|down_2|NZ_CP010888.1_3615107_3616658_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|571aa|down_3|NZ_CP010888.1_3616980_3618693_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|87aa|down_4|NZ_CP010888.1_3619045_3619306_-	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|404aa|down_5|NZ_CP010888.1_3619498_3620710_-	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli	NA|133aa|down_6|NZ_CP010888.1_3622713_3623112_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|516aa|down_7|NZ_CP010888.1_3623114_3624662_-	cd01948, EAL, EAL domain	NA|302aa|down_8|NZ_CP010888.1_3624976_3625882_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|215aa|down_9|NZ_CP010888.1_3625924_3626569_-	cd00475, Cis_IPPS, Cis (Z)-Isoprenyl Diphosphate Synthases
GCF_001577795.1_ASM157779v1	NZ_CP010888	Clostridioides difficile strain 08ACD0030 chromosome, complete genome	17	3610022-3610311	14	CRISPRCasFinder	no		cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTTCTTTTACAGCTTCTAAACATAT	25	0	0	NA	NA	NA	4	4	Orphan	cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|222aa|down_0|NZ_CP010888.1_3611208_3611874_+	NA|205aa|up_9|NZ_CP010888.1_3597768_3598383_-	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|150aa|up_8|NZ_CP010888.1_3598397_3598847_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|736aa|up_7|NZ_CP010888.1_3598871_3601079_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|171aa|up_6|NZ_CP010888.1_3601152_3601665_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|817aa|up_5|NZ_CP010888.1_3601677_3604128_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|555aa|up_4|NZ_CP010888.1_3604140_3605805_-	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|166aa|up_3|NZ_CP010888.1_3606102_3606600_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|460aa|up_2|NZ_CP010888.1_3606628_3608008_-	TIGR03974, six-Cys-in-45_modification_radical_SAM_protein, SCIFF radical SAM maturase	NA|49aa|up_1|NZ_CP010888.1_3608312_3608459_-	TIGR04223, quorum_AgrD, cyclic lactone autoinducer peptide	NA|193aa|up_0|NZ_CP010888.1_3608488_3609067_-	pfam04647, AgrB, Accessory gene regulator B	NA|222aa|down_0|NZ_CP010888.1_3611208_3611874_+	NA	NA|901aa|down_1|NZ_CP010888.1_3612379_3615082_-	cd01948, EAL, EAL domain	NA|517aa|down_2|NZ_CP010888.1_3615107_3616658_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|571aa|down_3|NZ_CP010888.1_3616980_3618693_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|87aa|down_4|NZ_CP010888.1_3619045_3619306_-	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|404aa|down_5|NZ_CP010888.1_3619498_3620710_-	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli	NA|133aa|down_6|NZ_CP010888.1_3622713_3623112_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|516aa|down_7|NZ_CP010888.1_3623114_3624662_-	cd01948, EAL, EAL domain	NA|302aa|down_8|NZ_CP010888.1_3624976_3625882_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|215aa|down_9|NZ_CP010888.1_3625924_3626569_-	cd00475, Cis_IPPS, Cis (Z)-Isoprenyl Diphosphate Synthases
GCF_001577795.1_ASM157779v1	NZ_CP010888	Clostridioides difficile strain 08ACD0030 chromosome, complete genome	18	3610514-3610604	15	CRISPRCasFinder	no		cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTTCTTTTACAGCTTCTAAACATAT	25	0	0	NA	NA	NA	1	1	Orphan	cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|222aa|down_0|NZ_CP010888.1_3611208_3611874_+	NA|205aa|up_9|NZ_CP010888.1_3597768_3598383_-	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|150aa|up_8|NZ_CP010888.1_3598397_3598847_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|736aa|up_7|NZ_CP010888.1_3598871_3601079_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|171aa|up_6|NZ_CP010888.1_3601152_3601665_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|817aa|up_5|NZ_CP010888.1_3601677_3604128_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|555aa|up_4|NZ_CP010888.1_3604140_3605805_-	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|166aa|up_3|NZ_CP010888.1_3606102_3606600_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|460aa|up_2|NZ_CP010888.1_3606628_3608008_-	TIGR03974, six-Cys-in-45_modification_radical_SAM_protein, SCIFF radical SAM maturase	NA|49aa|up_1|NZ_CP010888.1_3608312_3608459_-	TIGR04223, quorum_AgrD, cyclic lactone autoinducer peptide	NA|193aa|up_0|NZ_CP010888.1_3608488_3609067_-	pfam04647, AgrB, Accessory gene regulator B	NA|222aa|down_0|NZ_CP010888.1_3611208_3611874_+	NA	NA|901aa|down_1|NZ_CP010888.1_3612379_3615082_-	cd01948, EAL, EAL domain	NA|517aa|down_2|NZ_CP010888.1_3615107_3616658_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|571aa|down_3|NZ_CP010888.1_3616980_3618693_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|87aa|down_4|NZ_CP010888.1_3619045_3619306_-	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|404aa|down_5|NZ_CP010888.1_3619498_3620710_-	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli	NA|133aa|down_6|NZ_CP010888.1_3622713_3623112_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|516aa|down_7|NZ_CP010888.1_3623114_3624662_-	cd01948, EAL, EAL domain	NA|302aa|down_8|NZ_CP010888.1_3624976_3625882_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|215aa|down_9|NZ_CP010888.1_3625924_3626569_-	cd00475, Cis_IPPS, Cis (Z)-Isoprenyl Diphosphate Synthases
GCF_001577795.1_ASM157779v1	NZ_CP010888	Clostridioides difficile strain 08ACD0030 chromosome, complete genome	19	3822106-3823834	16,10,11	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,WYL	cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	ATTTACATACCACTTAGTTAATATAAAAC,ATTTACATACCACTTAGTTAATATAAAAC,GTTTTATATTAACTAAGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	26,26,23	26	Unclear	cas3,cas14k,csa3,WYL,DEDDh,cas14j,DinG,RT,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|67aa|up_7|NZ_CP010888.1_3814999_3815200_+,NA|260aa|up_1|NZ_CP010888.1_3820382_3821162_+,NA	NA|740aa|up_9|NZ_CP010888.1_3809346_3811566_-	cd01948, EAL, EAL domain	NA|885aa|up_8|NZ_CP010888.1_3811841_3814496_-	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|67aa|up_7|NZ_CP010888.1_3814999_3815200_+	NA	NA|197aa|up_6|NZ_CP010888.1_3815406_3815997_-	PRK08305, spoVFB, dipicolinate synthase subunit B; Reviewed	NA|292aa|up_5|NZ_CP010888.1_3815999_3816875_-	PRK08306, PRK08306, dipicolinate synthase subunit DpsA	NA|464aa|up_4|NZ_CP010888.1_3816950_3818342_-	cd17633, AFD_YhfT-like, fatty acid-CoA ligase VraA	NA|379aa|up_3|NZ_CP010888.1_3818345_3819482_-	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|182aa|up_2|NZ_CP010888.1_3819513_3820059_-	pfam02632, BioY, BioY family	NA|260aa|up_1|NZ_CP010888.1_3820382_3821162_+	NA	NA|143aa|up_0|NZ_CP010888.1_3821616_3822045_-	PRK10562, PRK10562, putative acetyltransferase; Provisional	cas2|89aa|down_0|NZ_CP010888.1_3824017_3824284_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|327aa|down_1|NZ_CP010888.1_3824286_3825267_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|184aa|down_2|NZ_CP010888.1_3825269_3825821_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|774aa|down_3|NZ_CP010888.1_3825835_3828157_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|234aa|down_4|NZ_CP010888.1_3828167_3828869_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|305aa|down_5|NZ_CP010888.1_3828870_3829785_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8b2|617aa|down_6|NZ_CP010888.1_3829786_3831637_-	pfam09706, Cas_CXXC_CXXC, CRISPR-associated protein (Cas_CXXC_CXXC)	cas6|246aa|down_7|NZ_CP010888.1_3831642_3832380_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	WYL|306aa|down_8|NZ_CP010888.1_3832457_3833375_-	pfam13280, WYL, WYL domain	NA|639aa|down_9|NZ_CP010888.1_3833653_3835570_-	pfam02687, FtsX, FtsX-like permease family
