The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP010993	Clostridium perfringens strain JP55 chromosome, complete genome	3347300	421892	490755	3347300	terminase,integrase,capsid,holin	Clostridium_phage(81.82%)	68	463473:463490	494793:494810
WP_061414373.1|421892_422264_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_061414376.1|422338_423010_-	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA	NA
WP_061414380.1|423953_426773_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.2	0.0e+00
WP_061414383.1|427105_427540_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003457997.1|427553_428783_+	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA	NA
WP_061414386.1|428783_430247_+	penicillin-binding protein	NA	NA	NA	NA	NA
WP_060669536.1|430403_432266_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003457971.1|432414_433329_+	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA	NA
WP_003457961.1|433568_434453_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	28.5	2.0e-10
WP_003458089.1|434449_435796_+	YvcK family protein	NA	A1IMD5	Streptococcus_phage	34.4	1.2e-46
WP_003457993.1|435798_436749_+	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	34.6	1.0e-44
WP_061414389.1|436921_437476_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061416086.1|437609_438854_-	DUF4179 domain-containing protein	NA	NA	NA	NA	NA
WP_003479012.1|438867_439404_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_004457476.1|439872_441123_+	DNA polymerase III subunit alpha	NA	Q8W6C3	Saccharomonospora_phage	39.9	6.6e-84
WP_004457554.1|441327_442107_+	LAGLIDADG family homing endonuclease	NA	A0A0E3XA08	Staphylococcus_phage	28.2	9.7e-09
WP_003455617.1|445255_446215_+	6-phosphofructokinase	NA	NA	NA	NA	NA
WP_011590151.1|446308_447712_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_003479007.1|448291_448648_+	DUF1540 domain-containing protein	NA	NA	NA	NA	NA
WP_011590152.1|448956_449754_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_057230510.1|449925_451461_+	cardiolipin synthase	NA	NA	NA	NA	NA
WP_003479004.1|451666_451825_-	DUF1540 domain-containing protein	NA	NA	NA	NA	NA
WP_061414392.1|452091_453654_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_061414395.1|453781_455149_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	43.8	1.3e-109
WP_061414398.1|455213_456356_-|integrase	site-specific integrase	integrase	A0A0A8WIE1	Clostridium_phage	58.0	4.3e-122
WP_061414401.1|456429_456870_-	ImmA/IrrE family metallo-endopeptidase	NA	M9Q1J0	Clostridium_phage	84.4	3.1e-65
WP_061414404.1|456972_457407_-	helix-turn-helix transcriptional regulator	NA	M9Q2L3	Clostridium_phage	66.0	4.5e-40
WP_061414407.1|457590_457785_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_061414409.1|457835_458033_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_061414412.1|458044_458224_+	hypothetical protein	NA	M9Q2G4	Clostridium_phage	93.2	4.3e-21
WP_061414415.1|458235_458784_+	sigma-70 family RNA polymerase sigma factor	NA	M9Q2I8	Clostridium_phage	49.2	2.7e-42
WP_061414419.1|459507_460329_+	hypothetical protein	NA	M9Q2G6	Clostridium_phage	97.8	1.2e-150
WP_081111417.1|460300_461038_+	ATP-binding protein	NA	M9Q1J4	Clostridium_phage	94.3	1.2e-133
WP_061414422.1|461098_461407_+	hypothetical protein	NA	M9Q2L5	Clostridium_phage	77.2	4.2e-40
WP_061414425.1|461407_462289_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061414428.1|462301_463339_+	nucleoid-associated protein	NA	J9QE81	Clostridium_phage	30.7	4.1e-39
WP_061414431.1|463415_463691_+	MarR family transcriptional regulator	NA	M9Q2I9	Clostridium_phage	92.3	8.3e-40
463473:463490	attL	TATAAAGTTTTGCTTTTA	NA	NA	NA	NA
WP_061414433.1|463699_464002_+	sporulation transcriptional regulator SpoIIID	NA	M9Q261	Clostridium_phage	92.0	2.1e-44
WP_061414436.1|464003_464345_+	sigma-70 family RNA polymerase sigma factor	NA	M9Q2G8	Clostridium_phage	43.4	1.5e-14
WP_061414439.1|465407_466067_+|integrase	tyrosine-type recombinase/integrase	integrase	M9Q2H0	Clostridium_phage	96.8	6.3e-118
WP_061414442.1|466549_467113_+	recombinase family protein	NA	M9Q1K0	Clostridium_phage	96.2	1.9e-94
WP_061414443.1|467928_469296_+|terminase	terminase	terminase	M9Q2I1	Clostridium_phage	97.6	5.8e-267
WP_061414446.1|469298_469508_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061414449.1|469509_471030_+|capsid	capsid protein	capsid	M9Q246	Clostridium_phage	96.4	1.1e-282
WP_061414452.1|471013_472153_+|capsid	capsid protein	capsid	M9Q2F2	Clostridium_phage	94.3	4.3e-199
WP_061414455.1|472220_473405_+	AAA family ATPase	NA	C7BGE8	Burkholderia_phage	29.4	1.8e-38
WP_061414459.1|473388_474153_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061414461.1|474279_474894_+	hypothetical protein	NA	M9Q248	Clostridium_phage	80.4	2.6e-65
WP_061414464.1|474914_475820_+	hypothetical protein	NA	M9Q2F4	Clostridium_phage	88.7	4.0e-155
WP_061414468.1|475836_476106_+	hypothetical protein	NA	M9Q1H8	Clostridium_phage	98.1	7.6e-22
WP_061414471.1|476142_476505_+	hypothetical protein	NA	M9Q2K9	Clostridium_phage	95.8	1.5e-57
WP_061414474.1|476507_476834_+	hypothetical protein	NA	M9Q2I3	Clostridium_phage	95.4	2.8e-55
WP_061414477.1|476833_477217_+	hypothetical protein	NA	M9Q249	Clostridium_phage	94.5	2.0e-63
WP_061414480.1|477216_477603_+	hypothetical protein	NA	M9Q2F6	Clostridium_phage	93.0	4.0e-64
WP_061414483.1|477612_478062_+	hypothetical protein	NA	M9Q1I1	Clostridium_phage	92.4	2.5e-73
WP_061414486.1|478078_478447_+	hypothetical protein	NA	M9Q2L0	Clostridium_phage	75.4	4.1e-42
WP_061414490.1|478436_478769_+	hypothetical protein	NA	M9Q2I4	Clostridium_phage	93.6	2.3e-52
WP_061414493.1|478810_482029_+	hypothetical protein	NA	M9Q251	Clostridium_phage	92.4	0.0e+00
WP_061414496.1|482032_482386_+	hypothetical protein	NA	M9Q2F8	Clostridium_phage	94.7	2.5e-57
WP_061414499.1|482459_482642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061414502.1|482711_482975_+	hypothetical protein	NA	Q0SPL4	Clostridium_phage	51.9	3.0e-15
WP_061414505.1|483040_483421_+	DUF1617 family protein	NA	M9Q2L1	Clostridium_phage	88.1	1.3e-56
WP_061414507.1|483456_487563_+	hypothetical protein	NA	M9Q2I5	Clostridium_phage	85.1	1.8e-242
WP_061414510.1|487578_487821_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061414513.1|487833_488250_+|holin	phage holin family protein	holin	M9Q253	Clostridium_phage	91.3	8.6e-65
WP_061414516.1|488290_488707_+	hypothetical protein	NA	M9Q2G0	Clostridium_phage	96.4	8.1e-63
WP_061414519.1|488824_489868_+	N-acetylmuramoyl-L-alanine amidase	NA	Q8SBN4	Clostridium_phage	86.5	2.7e-179
WP_061414522.1|490110_490755_+	PH domain-containing protein	NA	M9Q2L2	Clostridium_phage	79.0	4.6e-89
494793:494810	attR	TATAAAGTTTTGCTTTTA	NA	NA	NA	NA
>prophage 2
NZ_CP010993	Clostridium perfringens strain JP55 chromosome, complete genome	3347300	872634	885224	3347300		Synechococcus_phage(25.0%)	9	NA	NA
WP_003471934.1|872634_873285_+	aminotransferase	NA	A0A1B1P8C0	Bacillus_phage	31.1	2.9e-14
WP_003456962.1|873789_875100_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_061414910.1|875337_879138_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	24.9	4.7e-32
WP_003453078.1|879448_879928_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	47.4	2.6e-28
WP_003456948.1|879927_880635_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4SM18	Cyanophage	43.8	2.8e-47
WP_011009969.1|880656_882102_+	amidophosphoribosyltransferase	NA	A0A1B1ISH6	uncultured_Mediterranean_phage	33.0	1.4e-56
WP_003468449.1|882102_883104_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3FGG1	Synechococcus_phage	49.0	6.7e-71
WP_003468450.1|883091_883706_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	38.3	2.2e-24
WP_061414913.1|883718_885224_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	1.2e-66
>prophage 3
NZ_CP010993	Clostridium perfringens strain JP55 chromosome, complete genome	3347300	2038289	2051546	3347300	tRNA	Clostridium_phage(22.22%)	12	NA	NA
WP_003457168.1|2038289_2039327_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	36.0	5.4e-31
WP_003454568.1|2039527_2039797_+	ACT domain-containing protein	NA	NA	NA	NA	NA
WP_061415724.1|2039813_2041166_+	PFL family protein	NA	NA	NA	NA	NA
WP_061415726.1|2041377_2041881_-	QueT transporter family protein	NA	E7DN70	Pneumococcus_phage	37.2	1.1e-13
WP_003457231.1|2042205_2043081_-	MBL fold metallo-hydrolase	NA	Q332C0	Clostridium_botulinum_C_phage	50.2	1.1e-64
WP_011590863.1|2043251_2044574_-	sensor histidine kinase	NA	X5JAC0	Clostridium_phage	37.8	3.6e-72
WP_003449818.1|2044567_2045278_-	response regulator transcription factor	NA	A0A2R2ZGH8	Clostridioides_phage	31.8	3.3e-32
WP_003456038.1|2045416_2046430_-	N-acetylmuramoyl-L-alanine amidase	NA	Q8SBN4	Clostridium_phage	64.0	2.5e-121
WP_003455890.1|2046526_2046814_-	thiamine-binding protein	NA	NA	NA	NA	NA
WP_003456055.1|2047037_2048051_-	DUF348 domain-containing protein	NA	A0A143FMI2	Bacillus_phage	52.0	3.5e-19
WP_003455941.1|2048476_2049775_-	uracil permease	NA	Q9KX94	Enterobacteria_phage	39.3	3.6e-69
WP_003456099.1|2049962_2051546_+	ATP-binding cassette domain-containing protein	NA	A0A1V0SGN0	Hokovirus	25.6	8.5e-44
>prophage 4
NZ_CP010993	Clostridium perfringens strain JP55 chromosome, complete genome	3347300	2508612	2518122	3347300	tRNA,transposase	Orpheovirus(33.33%)	9	NA	NA
WP_003470991.1|2508612_2509860_-|tRNA	histidine--tRNA ligase	tRNA	A0A2I2L577	Orpheovirus	26.3	1.5e-27
WP_061415837.1|2509891_2511334_-	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
WP_003468751.1|2511323_2511944_-	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	32.3	4.5e-25
WP_003451157.1|2512103_2512553_-|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_003468756.1|2512567_2514748_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	36.9	1.4e-12
WP_003451591.1|2514899_2515418_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	2.1e-28
WP_003451668.1|2515461_2516316_-	DHH family phosphoesterase	NA	NA	NA	NA	NA
WP_003448635.1|2516598_2517069_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.5	1.1e-18
WP_003451195.1|2517252_2518122_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	38.7	2.0e-34
>prophage 5
NZ_CP010993	Clostridium perfringens strain JP55 chromosome, complete genome	3347300	2780100	2845906	3347300	tRNA,coat,protease,transposase	Clostridium_phage(15.38%)	60	NA	NA
WP_061415923.1|2780100_2781300_+|transposase	transposase	transposase	Q331V1	Clostridium_botulinum_C_phage	75.8	2.3e-166
WP_003468158.1|2781458_2781923_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_003468132.1|2781916_2782621_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
WP_061415925.1|2782620_2783067_+	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_003468145.1|2783348_2783945_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_049040054.1|2784292_2786455_-	RNA-binding transcriptional accessory protein Tex	NA	NA	NA	NA	NA
WP_049040052.1|2786566_2787910_+	Zn-dependent exopeptidase M28	NA	NA	NA	NA	NA
WP_139320904.1|2788158_2789254_-	peptide chain release factor 2	NA	A0A2I2MPK0	Mycobacterium_phage	50.0	2.2e-06
WP_049040049.1|2789507_2792030_-	preprotein translocase subunit SecA	NA	NA	NA	NA	NA
WP_003452413.1|2792265_2792805_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_061415929.1|2793256_2793916_-	ComF family protein	NA	NA	NA	NA	NA
WP_003470573.1|2793891_2794854_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003468230.1|2794871_2797106_-	ATP-dependent RecD-like DNA helicase	NA	A0A0K2FLP8	Brevibacillus_phage	32.0	2.7e-72
WP_003452520.1|2797242_2798379_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_061415931.1|2798515_2799691_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	67.9	2.0e-151
WP_003468164.1|2800909_2801572_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003468202.1|2801659_2802190_+|protease	spore protease YyaC	protease	G3M9W0	Bacillus_virus	38.5	1.0e-17
WP_003452335.1|2802228_2803266_-	rod shape-determining protein	NA	NA	NA	NA	NA
WP_003452341.1|2803356_2803608_-	sporulation transcriptional regulator SpoIIID	NA	M9Q261	Clostridium_phage	58.7	2.4e-17
WP_003468140.1|2803682_2804453_-	M23 family metallopeptidase	NA	NA	NA	NA	NA
WP_003468179.1|2804563_2805586_-	stage II sporulation protein D	NA	Q2XU88	Pseudomonas_phage	35.9	3.0e-34
WP_003470895.1|2805697_2806963_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_003468192.1|2806985_2807630_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003448635.1|2807902_2808373_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.5	1.1e-18
WP_003452358.1|2808548_2808950_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_003452277.1|2808965_2810363_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003452288.1|2810376_2811228_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_003452357.1|2811292_2812801_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003457416.1|2812811_2813351_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_003452454.1|2813353_2813833_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003452423.1|2813932_2814151_-	ATP synthase F0 subunit C	NA	NA	NA	NA	NA
WP_003452429.1|2814211_2814886_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003482158.1|2814951_2815308_-	ATP synthase subunit I	NA	NA	NA	NA	NA
WP_003457425.1|2815989_2817168_-	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA	NA
WP_003468131.1|2817435_2818590_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	25.5	2.9e-25
WP_003452430.1|2818653_2819283_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003457391.1|2819327_2819777_-	ribose 5-phosphate isomerase B	NA	NA	NA	NA	NA
WP_003452339.1|2820040_2821093_-	threonylcarbamoyl-AMP synthase	NA	A0A291ATS8	Pandoravirus	36.7	8.4e-48
WP_003452379.1|2821115_2821706_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003452315.1|2821784_2822867_-	peptide chain release factor 1	NA	NA	NA	NA	NA
WP_003457428.1|2822923_2824687_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_003452353.1|2824712_2825312_-	thymidine kinase	NA	A0A249XXF6	Clostridium_phage	48.7	6.6e-50
WP_003452406.1|2825467_2825674_+	50S ribosomal protein L31	NA	NA	NA	NA	NA
WP_003457423.1|2825782_2826907_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_003452426.1|2826949_2828410_-	transcription termination factor Rho	NA	NA	NA	NA	NA
WP_003452392.1|2828675_2830283_-	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	53.4	8.0e-159
WP_003452275.1|2830623_2831043_-	DUF1934 domain-containing protein	NA	NA	NA	NA	NA
WP_011591068.1|2831065_2832046_-|tRNA	tRNA 4-thiouridine(8) synthase ThiI	tRNA	NA	NA	NA	NA
WP_061415933.1|2832091_2832721_-	stage II sporulation protein R	NA	NA	NA	NA	NA
WP_003471015.1|2832789_2833656_-	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
WP_061415934.1|2833791_2836416_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003452400.1|2836402_2837230_-	cyanophycinase	NA	NA	NA	NA	NA
WP_003457329.1|2837329_2838892_-	DUF3794 domain-containing protein	NA	NA	NA	NA	NA
WP_003462688.1|2839251_2839488_-	Veg family protein	NA	NA	NA	NA	NA
WP_061415935.1|2839650_2840538_-	sporulation peptidase YabG	NA	NA	NA	NA	NA
WP_011010823.1|2840740_2841745_-|coat	CotS family spore coat protein	coat	NA	NA	NA	NA
WP_011010824.1|2841853_2842981_+	glycosyltransferase family 4 protein	NA	B6EFC4	Stygiolobus_rod-shaped_virus	36.6	1.4e-05
WP_011010825.1|2843163_2844192_-|coat	CotS family spore coat protein	coat	NA	NA	NA	NA
WP_011010826.1|2844207_2844891_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011010827.1|2844898_2845906_-|coat	CotS family spore coat protein	coat	NA	NA	NA	NA
