assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001579945.1_ASM157994v1	NZ_CP011971	Steroidobacter denitrificans strain DSM 18526 chromosome, complete genome	1	31993-34132	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	cas3,cas5,cas8c,cas7,cas4,cas1,cas2,PD-DExK,csa3,DEDDh,DinG	Type I-C, Type I-U?,Type I-U	GTCGCGCCCTCACGGGCGCGTGGATTGAAAC,GTCGCGCCCTCACGGGCGCGTGGATTGAAAC,GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	31,31,31	0	0	NA	NA	I-C:I-C:I-C	32,32,32	32	TypeI-C,TypeI-U?,TypeI-U	cas3,cas5,cas8c,cas7,cas4,cas1,cas2,PD-DExK,csa3,DEDDh,DinG	NA,NA|85aa|down_7|NZ_CP011971.1_46730_46985_-	NA|288aa|up_9|NZ_CP011971.1_19930_20794_-	pfam12834, Phage_int_SAM_2, Phage integrase, N-terminal	cas3|755aa|up_8|NZ_CP011971.1_23260_25525_+	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	NA|94aa|up_7|NZ_CP011971.1_25763_26045_+	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|144aa|up_6|NZ_CP011971.1_26041_26473_+	cd09872, PIN_Sll0205-like, VapC-like PIN domain of Sll0205 protein and homologs	cas5|223aa|up_5|NZ_CP011971.1_26487_27156_+	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|584aa|up_4|NZ_CP011971.1_27152_28904_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7|306aa|up_3|NZ_CP011971.1_28900_29818_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas4|211aa|up_2|NZ_CP011971.1_29839_30472_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|345aa|up_1|NZ_CP011971.1_30475_31510_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|97aa|up_0|NZ_CP011971.1_31526_31817_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|418aa|down_0|NZ_CP011971.1_35451_36705_-	TIGR02679, conserved_hypothetical_protein, TIGR02679 family protein	NA|1391aa|down_1|NZ_CP011971.1_36697_40870_-	TIGR02680, conserved_hypothetical_protein, TIGR02680 family protein	NA|419aa|down_2|NZ_CP011971.1_40878_42135_-	pfam09661, DUF2398, Protein of unknown function (DUF2398)	NA|508aa|down_3|NZ_CP011971.1_42131_43655_-	TIGR02677, conserved_hypothetical_protein, TIGR02677 family protein	NA|450aa|down_4|NZ_CP011971.1_43753_45103_-	PRK12391, PRK12391, TrpB-like pyridoxal phosphate-dependent enzyme	NA|280aa|down_5|NZ_CP011971.1_45220_46060_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|159aa|down_6|NZ_CP011971.1_46220_46697_-	cd07249, MMCE, Methylmalonyl-CoA epimerase (MMCE)	NA|85aa|down_7|NZ_CP011971.1_46730_46985_-	NA	NA|337aa|down_8|NZ_CP011971.1_47056_48067_+	TIGR03617, F420_MSMEG_2256, probable F420-dependent oxidoreductase, MSMEG_2256 family	NA|271aa|down_9|NZ_CP011971.1_48188_49001_-	cd01638, CysQ, CysQ, a 3'-Phosphoadenosine-5'-phosphosulfate (PAPS) 3'-phosphatase, is a bacterial member of the inositol monophosphatase family
GCF_001579945.1_ASM157994v1	NZ_CP011971	Steroidobacter denitrificans strain DSM 18526 chromosome, complete genome	2	273263-273391	2	CRISPRCasFinder	no		cas3,cas5,cas8c,cas7,cas4,cas1,cas2,PD-DExK,csa3,DEDDh,DinG	Orphan	CGGCCGGCGCATCCTGCGCCGGCGTTCGCGCCGCCGGAGGGCGG	44	0	0	NA	NA	NA	1	1	Orphan	cas3,cas5,cas8c,cas7,cas4,cas1,cas2,PD-DExK,csa3,DEDDh,DinG	NA|48aa|up_3|NZ_CP011971.1_269103_269247_+,NA|277aa|down_3|NZ_CP011971.1_279166_279997_+,NA|245aa|down_4|NZ_CP011971.1_280455_281190_-	NA|600aa|up_9|NZ_CP011971.1_263282_265082_-	PRK05667, dnaG, DNA primase; Validated	NA|149aa|up_8|NZ_CP011971.1_265226_265673_-	pfam09424, YqeY, Yqey-like protein	NA|76aa|up_7|NZ_CP011971.1_265709_265937_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|346aa|up_6|NZ_CP011971.1_266290_267328_+	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	NA|174aa|up_5|NZ_CP011971.1_267811_268333_+	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]	NA|274aa|up_4|NZ_CP011971.1_268283_269105_-	PRK09135, PRK09135, pteridine reductase; Provisional	NA|48aa|up_3|NZ_CP011971.1_269103_269247_+	NA	NA|405aa|up_2|NZ_CP011971.1_269243_270458_+	COG1565, COG1565, Uncharacterized conserved protein [Function unknown]	NA|413aa|up_1|NZ_CP011971.1_270516_271755_-	PRK10885, cca, multifunctional CCA addition/repair protein	NA|424aa|up_0|NZ_CP011971.1_271949_273221_+	pfam10023, Aminopep, Putative aminopeptidase	NA|452aa|down_0|NZ_CP011971.1_273394_274750_-	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|705aa|down_1|NZ_CP011971.1_275521_277636_+	TIGR02504, ribonucleotide_reductase, ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent	NA|235aa|down_2|NZ_CP011971.1_277775_278480_+	PRK08665, PRK08665, vitamin B12-dependent ribonucleotide reductase	NA|277aa|down_3|NZ_CP011971.1_279166_279997_+	NA	NA|245aa|down_4|NZ_CP011971.1_280455_281190_-	NA	NA|253aa|down_5|NZ_CP011971.1_281171_281930_-	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system	NA|156aa|down_6|NZ_CP011971.1_282535_283003_-	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|425aa|down_7|NZ_CP011971.1_283700_284975_-	pfam07804, HipA_C, HipA-like C-terminal domain	NA|111aa|down_8|NZ_CP011971.1_284987_285320_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|240aa|down_9|NZ_CP011971.1_285725_286445_+	pfam08241, Methyltransf_11, Methyltransferase domain
GCF_001579945.1_ASM157994v1	NZ_CP011971	Steroidobacter denitrificans strain DSM 18526 chromosome, complete genome	3	378275-378383	3	CRISPRCasFinder	no		cas3,cas5,cas8c,cas7,cas4,cas1,cas2,PD-DExK,csa3,DEDDh,DinG	Orphan	ATGCATCGAGAGAAATGCATGGCTGGGTAAGGATC	35	0	0	NA	NA	NA	1	1	Orphan	cas3,cas5,cas8c,cas7,cas4,cas1,cas2,PD-DExK,csa3,DEDDh,DinG	NA|65aa|up_6|NZ_CP011971.1_371648_371843_-,NA|550aa|down_0|NZ_CP011971.1_378516_380166_+	NA|92aa|up_9|NZ_CP011971.1_367927_368203_-	cd12399, RRM_HP0827_like, RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins	NA|651aa|up_8|NZ_CP011971.1_368721_370674_-	PRK05354, PRK05354, biosynthetic arginine decarboxylase	NA|221aa|up_7|NZ_CP011971.1_370788_371451_+	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|65aa|up_6|NZ_CP011971.1_371648_371843_-	NA	NA|167aa|up_5|NZ_CP011971.1_371969_372470_+	PRK01885, greB, transcription elongation factor GreB; Reviewed	NA|708aa|up_4|NZ_CP011971.1_372459_374583_+	cd08662, M13, Peptidase family M13 includes neprilysin and endothelin-converting enzyme I	NA|216aa|up_3|NZ_CP011971.1_374712_375360_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|313aa|up_2|NZ_CP011971.1_375395_376334_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|164aa|up_1|NZ_CP011971.1_376344_376836_+	COG3762, COG3762, Predicted membrane protein [Function unknown]	NA|385aa|up_0|NZ_CP011971.1_377058_378213_+	PRK10260, PRK10260, L,D-transpeptidase; Provisional	NA|550aa|down_0|NZ_CP011971.1_378516_380166_+	NA	NA|196aa|down_1|NZ_CP011971.1_380155_380743_-	pfam01923, Cob_adeno_trans, Cobalamin adenosyltransferase	NA|649aa|down_2|NZ_CP011971.1_380914_382861_-	COG4206, BtuB, Outer membrane cobalamin receptor protein [Coenzyme metabolism]	NA|257aa|down_3|NZ_CP011971.1_383410_384181_+	cd01641, Bacterial_IMPase_like_1, Predominantly bacterial family of Mg++ dependend phosphatases, related to inositol monophosphatases	NA|259aa|down_4|NZ_CP011971.1_384187_384964_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|123aa|down_5|NZ_CP011971.1_385031_385400_-	PRK12497, PRK12497, YraN family protein	NA|648aa|down_6|NZ_CP011971.1_385430_387374_-	cd06339, PBP1_YraM_LppC_lipoprotein-like, periplasmic binding component of lipoprotein LppC, an immunodominant antigen	NA|320aa|down_7|NZ_CP011971.1_387578_388538_+	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|152aa|down_8|NZ_CP011971.1_389532_389988_+	PRK00326, PRK00326, transcriptional regulator MraZ	NA|310aa|down_9|NZ_CP011971.1_389997_390927_+	PRK00050, PRK00050, 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH
GCF_001579945.1_ASM157994v1	NZ_CP011971	Steroidobacter denitrificans strain DSM 18526 chromosome, complete genome	4	950976-951085	4	CRISPRCasFinder	no		cas3,cas5,cas8c,cas7,cas4,cas1,cas2,PD-DExK,csa3,DEDDh,DinG	Orphan	GCCGGCCATGAATCCGCAGGCATGACC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,cas5,cas8c,cas7,cas4,cas1,cas2,PD-DExK,csa3,DEDDh,DinG	NA,NA	NA|218aa|up_9|NZ_CP011971.1_939936_940590_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|302aa|up_8|NZ_CP011971.1_940749_941655_-	PRK12405, PRK12405, electron transport complex RsxE subunit; Provisional	NA|243aa|up_7|NZ_CP011971.1_941722_942451_-	PRK01908, PRK01908, electron transport complex protein RnfG; Validated	NA|353aa|up_6|NZ_CP011971.1_942440_943499_-	PRK00816, rnfD, electron transport complex protein RnfD; Reviewed	NA|515aa|up_5|NZ_CP011971.1_943590_945135_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|176aa|up_4|NZ_CP011971.1_945131_945659_-	PRK05113, PRK05113, electron transport complex protein RnfB; Provisional	NA|193aa|up_3|NZ_CP011971.1_945691_946270_-	PRK05151, PRK05151, electron transport complex protein RsxA; Provisional	NA|704aa|up_2|NZ_CP011971.1_946325_948437_-	PRK00133, metG, methionyl-tRNA synthetase; Reviewed	NA|351aa|up_1|NZ_CP011971.1_948694_949747_-	COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]	NA|365aa|up_0|NZ_CP011971.1_949821_950916_-	COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]	NA|800aa|down_0|NZ_CP011971.1_951142_953542_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|365aa|down_1|NZ_CP011971.1_954175_955270_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|189aa|down_2|NZ_CP011971.1_955343_955910_+	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed	NA|308aa|down_3|NZ_CP011971.1_955964_956888_-	pfam11306, DUF3108, Protein of unknown function (DUF3108)	NA|223aa|down_4|NZ_CP011971.1_956988_957657_-	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed	NA|344aa|down_5|NZ_CP011971.1_957656_958688_-	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|308aa|down_6|NZ_CP011971.1_958947_959871_+	pfam09839, DUF2066, Uncharacterized protein conserved in bacteria (DUF2066)	NA|191aa|down_7|NZ_CP011971.1_959996_960569_+	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|245aa|down_8|NZ_CP011971.1_960631_961366_+	TIGR03420, DnaA_homol_Hda, DnaA regulatory inactivator Hda	NA|131aa|down_9|NZ_CP011971.1_961445_961838_-	pfam09842, DUF2069, Predicted membrane protein (DUF2069)
GCF_001579945.1_ASM157994v1	NZ_CP011971	Steroidobacter denitrificans strain DSM 18526 chromosome, complete genome	5	1170712-1170815	5	CRISPRCasFinder	no		cas3,cas5,cas8c,cas7,cas4,cas1,cas2,PD-DExK,csa3,DEDDh,DinG	Orphan	CCCTCCGTGCCTTCGGATTTTGAGGCACGG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,cas5,cas8c,cas7,cas4,cas1,cas2,PD-DExK,csa3,DEDDh,DinG	NA,NA	NA|112aa|up_9|NZ_CP011971.1_1161086_1161422_+	PRK09541, emrE, EmrE family multidrug efflux SMR transporter	NA|299aa|up_8|NZ_CP011971.1_1161737_1162634_-	COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]	NA|270aa|up_7|NZ_CP011971.1_1162680_1163490_-	COG4137, COG4137, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|452aa|up_6|NZ_CP011971.1_1163893_1165249_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|86aa|up_5|NZ_CP011971.1_1165376_1165634_+	PRK00040, rpsP, 30S ribosomal protein S16; Reviewed	NA|217aa|up_4|NZ_CP011971.1_1165680_1166331_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|254aa|up_3|NZ_CP011971.1_1166414_1167176_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|115aa|up_2|NZ_CP011971.1_1167192_1167537_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|369aa|up_1|NZ_CP011971.1_1167637_1168744_+	COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]	NA|613aa|up_0|NZ_CP011971.1_1168821_1170660_+	PRK10949, PRK10949, signal peptide peptidase SppA	NA|568aa|down_0|NZ_CP011971.1_1170864_1172568_-	PRK12266, glpD, glycerol-3-phosphate dehydrogenase; Reviewed	NA|134aa|down_1|NZ_CP011971.1_1172629_1173031_+	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]	NA|620aa|down_2|NZ_CP011971.1_1173162_1175022_-	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|93aa|down_3|NZ_CP011971.1_1175284_1175563_-	pfam07238, PilZ, PilZ domain	NA|313aa|down_4|NZ_CP011971.1_1175810_1176749_+	PRK00865, PRK00865, glutamate racemase; Provisional	NA|513aa|down_5|NZ_CP011971.1_1176868_1178407_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|397aa|down_6|NZ_CP011971.1_1179037_1180228_+	PRK00049, PRK00049, elongation factor Tu; Reviewed	NA|126aa|down_7|NZ_CP011971.1_1180574_1180952_+	PRK05740, secE, preprotein translocase subunit SecE; Reviewed	NA|178aa|down_8|NZ_CP011971.1_1180954_1181488_+	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|144aa|down_9|NZ_CP011971.1_1181635_1182067_+	PRK00140, rplK, 50S ribosomal protein L11; Validated
GCF_001579945.1_ASM157994v1	NZ_CP011971	Steroidobacter denitrificans strain DSM 18526 chromosome, complete genome	6	2317177-2317280	6	CRISPRCasFinder	no		cas3,cas5,cas8c,cas7,cas4,cas1,cas2,PD-DExK,csa3,DEDDh,DinG	Orphan	GAGCGGCGATGAGACAAGGGTTACGGTCACTCGTCCCG	38	0	0	NA	NA	NA	1	1	Orphan	cas3,cas5,cas8c,cas7,cas4,cas1,cas2,PD-DExK,csa3,DEDDh,DinG	NA|229aa|up_5|NZ_CP011971.1_2306914_2307601_+,NA|398aa|down_8|NZ_CP011971.1_2328781_2329975_-	NA|173aa|up_9|NZ_CP011971.1_2302134_2302653_-	PRK00464, nrdR, transcriptional repressor NrdR	NA|418aa|up_8|NZ_CP011971.1_2302689_2303943_-	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|336aa|up_7|NZ_CP011971.1_2303983_2304991_-	cd09994, HDAC_AcuC_like, Class I histone deacetylase AcuC (Acetoin utilization protein)-like enzymes	NA|559aa|up_6|NZ_CP011971.1_2305223_2306900_+	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed	NA|229aa|up_5|NZ_CP011971.1_2306914_2307601_+	NA	NA|1330aa|up_4|NZ_CP011971.1_2307698_2311688_-	PRK05297, PRK05297, phosphoribosylformylglycinamidine synthase; Provisional	NA|110aa|up_3|NZ_CP011971.1_2312009_2312339_-	pfam08850, DUF1820, Domain of unknown function (DUF1820)	NA|498aa|up_2|NZ_CP011971.1_2312428_2313922_+	COG3456, COG3456, Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular    transport; Signal transduction mechanisms]	NA|462aa|up_1|NZ_CP011971.1_2314023_2315409_+	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1	NA|468aa|up_0|NZ_CP011971.1_2315653_2317057_-	PRK10859, PRK10859, membrane-bound lytic murein transglycosylase MltF	NA|294aa|down_0|NZ_CP011971.1_2317845_2318727_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|182aa|down_1|NZ_CP011971.1_2318815_2319361_+	COG0386, BtuE, Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]	NA|579aa|down_2|NZ_CP011971.1_2319419_2321156_+	COG4986, COG4986, ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism]	NA|433aa|down_3|NZ_CP011971.1_2321166_2322465_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|729aa|down_4|NZ_CP011971.1_2322981_2325168_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|236aa|down_5|NZ_CP011971.1_2325197_2325905_-	cd01638, CysQ, CysQ, a 3'-Phosphoadenosine-5'-phosphosulfate (PAPS) 3'-phosphatase, is a bacterial member of the inositol monophosphatase family	NA|631aa|down_6|NZ_CP011971.1_2325942_2327835_-	PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional	NA|316aa|down_7|NZ_CP011971.1_2327834_2328782_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|398aa|down_8|NZ_CP011971.1_2328781_2329975_-	NA	NA|406aa|down_9|NZ_CP011971.1_2329994_2331212_-	pfam13469, Sulfotransfer_3, Sulfotransferase family
