The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP010998	Staphylococcus aureus strain FORC_012 isolate human sputum chromosome, complete genome	2815416	41260	86761	2815416	head,portal,holin,integrase,plate,tail,capsid,terminase	Staphylococcus_virus(53.12%)	66	39357:39373	72804:72820
39357:39373	attL	GAAATTAGATAAAAACA	NA	NA	NA	NA
WP_001006453.1|41260_42511_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.8	1.1e-110
WP_001010512.1|42500_42965_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_001074405.1|43115_44513_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_001145728.1|44580_45630_-|integrase	site-specific integrase	integrase	A1KWY3	Staphylococcus_virus	100.0	1.6e-203
WP_000826266.1|45692_46208_-	hypothetical protein	NA	I1W624	Staphylococcus_phage	100.0	1.5e-37
WP_000896616.1|46211_46712_-	hypothetical protein	NA	B7T094	Staphylococcus_virus	100.0	1.1e-71
WP_000874713.1|46762_47401_-	LexA family transcriptional regulator	NA	E0Y3N7	Staphylococcus_virus	100.0	1.5e-116
WP_001106628.1|47591_47846_+	helix-turn-helix transcriptional regulator	NA	A0A0E3T8G8	Staphylococcus_phage	100.0	8.2e-42
WP_001148578.1|47861_48653_+	phage antirepressor KilAC domain-containing protein	NA	E0Y3N9	Staphylococcus_virus	100.0	6.5e-146
WP_000187184.1|48653_48878_+	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	100.0	3.2e-34
WP_000993183.1|48917_49367_+	hypothetical protein	NA	A0A0H3U2S4	Staphylococcus_phage	100.0	2.3e-79
WP_000977378.1|49380_49602_+	hypothetical protein	NA	E0Y3P2	Staphylococcus_virus	100.0	1.5e-31
WP_000066013.1|49594_49762_+	DUF1270 domain-containing protein	NA	S4V7J2	Staphylococcus_phage	96.4	4.0e-21
WP_000219666.1|49762_50083_+	hypothetical protein	NA	S4V968	Staphylococcus_phage	100.0	4.8e-55
WP_000291075.1|50176_50437_+	DUF1108 family protein	NA	A0A059T5A3	Staphylococcus_phage	100.0	1.2e-43
WP_000815401.1|50446_50668_+	DUF2483 family protein	NA	A7TWM6	Staphylococcus_phage	100.0	3.2e-34
WP_061477611.1|50660_51440_+	ATP-binding protein	NA	E0Y3P6	Staphylococcus_virus	98.5	6.9e-140
WP_011447037.1|51523_52024_+	single-strand DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	100.0	7.2e-90
WP_016028251.1|52036_52708_+	hypothetical protein	NA	E0Y3P8	Staphylococcus_virus	100.0	5.8e-127
WP_016028252.1|52817_53477_-	hypothetical protein	NA	E0Y3Q0	Staphylococcus_virus	100.0	1.4e-120
WP_000190226.1|53522_54293_+	hypothetical protein	NA	A0A2H4PQI2	Staphylococcus_phage	100.0	2.4e-116
WP_000803028.1|54302_55076_+	ATP-binding protein	NA	A0A2H4PQI3	Staphylococcus_phage	100.0	4.6e-144
WP_000256589.1|55069_55228_+	hypothetical protein	NA	A0A2H4PQI7	Staphylococcus_phage	100.0	4.5e-22
WP_001123681.1|55241_55463_+	DUF3269 family protein	NA	A0A2H4PQI9	Staphylococcus_phage	100.0	2.2e-35
WP_000049798.1|55473_55878_+	DUF1064 domain-containing protein	NA	G4KNP2	Staphylococcus_phage	100.0	1.6e-68
WP_016028253.1|55882_56068_+	DUF3113 family protein	NA	A0A2H4PQI8	Staphylococcus_phage	100.0	3.2e-27
WP_016028254.1|56068_56437_+	hypothetical protein	NA	A0A2H4PQJ6	Staphylococcus_phage	100.0	3.1e-50
WP_000131389.1|56440_56683_+	hypothetical protein	NA	A0A2H4PQJ3	Staphylococcus_phage	100.0	6.6e-41
WP_061477612.1|56697_56949_+	DUF1024 family protein	NA	E0Y3Q8	Staphylococcus_virus	97.6	2.4e-38
WP_000454994.1|57112_57394_+	hypothetical protein	NA	A0A2I6PDX3	Staphylococcus_phage	100.0	8.5e-48
WP_016028255.1|57570_58104_+	hypothetical protein	NA	E0Y3R2	Staphylococcus_virus	100.0	6.0e-95
WP_016028256.1|58140_58347_+	DUF1381 domain-containing protein	NA	E0Y3R3	Staphylococcus_virus	100.0	1.7e-29
WP_000595257.1|58343_58517_+	transcriptional activator RinB	NA	Q4ZBK0	Staphylococcus_phage	100.0	6.4e-22
WP_000383791.1|58517_58880_+	hypothetical protein	NA	Q4ZDW4	Staphylococcus_virus	94.1	5.2e-58
WP_000989961.1|58880_59027_+	hypothetical protein	NA	E0Y3R6	Staphylococcus_virus	100.0	1.7e-15
WP_000058634.1|59041_59461_+	transcriptional regulator	NA	B7T0C4	Staphylococcus_virus	100.0	1.1e-70
WP_009560332.1|59647_60088_+|terminase	terminase small subunit	terminase	E0Y3R8	Staphylococcus_virus	100.0	1.3e-74
WP_009560330.1|60074_61352_+|terminase	PBSX family phage terminase large subunit	terminase	A0EWS5	Staphylococcus_virus	99.8	1.1e-248
WP_061477613.1|61362_62898_+|portal	phage portal protein	portal	Q4ZDN2	Staphylococcus_virus	99.4	1.4e-290
WP_001133043.1|62904_63900_+|capsid	minor capsid protein	capsid	E0Y3K7	Staphylococcus_virus	100.0	3.4e-184
WP_000072207.1|63972_64143_+	hypothetical protein	NA	Q4ZDF2	Staphylococcus_virus	100.0	3.3e-23
WP_000354305.1|64277_64892_+	DUF4355 domain-containing protein	NA	I1W646	Staphylococcus_phage	100.0	2.9e-40
WP_000438511.1|64905_65880_+|capsid	phage major capsid protein	capsid	E0Y3L0	Staphylococcus_virus	100.0	2.2e-183
WP_001114085.1|65901_66189_+	hypothetical protein	NA	S4V6D9	Staphylococcus_phage	100.0	4.7e-46
WP_000208959.1|66197_66530_+|head,tail	phage head-tail connector protein	head,tail	E0Y3L2	Staphylococcus_virus	100.0	7.1e-54
WP_001268305.1|66526_66829_+	hypothetical protein	NA	E0Y3L3	Staphylococcus_virus	100.0	2.0e-50
WP_001017818.1|66828_67176_+	HK97 gp10 family phage protein	NA	E0Y3L4	Staphylococcus_virus	100.0	4.1e-60
WP_000188652.1|67187_67571_+	hypothetical protein	NA	E0Y3L5	Staphylococcus_virus	100.0	2.6e-68
WP_000002577.1|67589_68171_+|tail	phage major tail protein, TP901-1 family	tail	A0A0F6N3L8	Staphylococcus_phage	100.0	4.9e-106
WP_001100164.1|68232_68598_+	hypothetical protein	NA	E0Y3L7	Staphylococcus_virus	100.0	9.6e-60
WP_000105584.1|68627_68972_+	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
WP_016028242.1|68988_72456_+	phage tape measure protein	NA	E0Y3L9	Staphylococcus_virus	100.0	1.2e-252
WP_016028243.1|72468_73416_+|tail	phage tail family protein	tail	E0Y3M0	Staphylococcus_virus	100.0	2.8e-183
72804:72820	attR	GAAATTAGATAAAAACA	NA	NA	NA	NA
WP_016028244.1|73424_75326_+	hypothetical protein	NA	E0Y3M1	Staphylococcus_virus	100.0	0.0e+00
WP_000066419.1|75340_77251_+	minor structural protein	NA	Q8SDT4	Staphylococcus_phage	100.0	0.0e+00
WP_016028245.1|77250_79074_+|plate	phage baseplate upper protein	plate	E0Y3M3	Staphylococcus_virus	100.0	0.0e+00
WP_000705917.1|79073_79451_+	DUF2977 domain-containing protein	NA	E0Y3M4	Staphylococcus_virus	100.0	2.6e-60
WP_000782200.1|79453_79627_+	XkdX family protein	NA	A0A0F6N3L7	Staphylococcus_phage	100.0	6.6e-27
WP_000466777.1|79667_79967_+	DUF2951 domain-containing protein	NA	A0A0F6N3M6	Staphylococcus_phage	100.0	9.9e-47
WP_016028247.1|80103_82002_+	CHAP domain-containing protein	NA	E0Y3M7	Staphylococcus_virus	100.0	0.0e+00
WP_000276641.1|82014_83253_+|plate	BppU family phage baseplate upper protein	plate	E0Y3M8	Staphylococcus_virus	100.0	3.5e-210
WP_000398878.1|83257_83653_+	hypothetical protein	NA	Q4ZBP5	Staphylococcus_phage	100.0	2.7e-68
WP_000611512.1|83709_83964_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|83975_84731_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000238962.1|85222_86017_+	phosphatidylinositol kinase	NA	E0Y3N2	Staphylococcus_virus	100.0	4.9e-149
WP_061477614.1|86023_86761_+	hypothetical protein	NA	E0Y3N3	Staphylococcus_virus	99.6	1.3e-135
>prophage 2
NZ_CP010998	Staphylococcus aureus strain FORC_012 isolate human sputum chromosome, complete genome	2815416	247097	255570	2815416		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|247097_247580_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010412.1|247566_248691_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|248694_249399_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|249398_249662_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666794.1|249663_250335_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032727.1|250327_252517_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_031871549.1|252495_253980_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.5	4.2e-45
WP_000030811.1|253972_255001_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_000238670.1|255003_255570_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	3.6e-29
>prophage 3
NZ_CP010998	Staphylococcus aureus strain FORC_012 isolate human sputum chromosome, complete genome	2815416	795091	803421	2815416	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|795091_795877_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924220.1|796002_796893_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	36.0	3.4e-26
WP_001062177.1|796902_798249_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000683933.1|798362_799463_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624571.1|799465_800143_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|800273_801380_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217246.1|801603_803421_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.6e-54
>prophage 4
NZ_CP010998	Staphylococcus aureus strain FORC_012 isolate human sputum chromosome, complete genome	2815416	871201	880241	2815416	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|871201_871720_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000595005.1|871741_874012_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	2.4e-63
WP_000749795.1|874214_876494_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|876768_877029_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112049.1|877047_878187_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	1.6e-84
WP_001019178.1|878209_879235_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|879236_880241_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 5
NZ_CP010998	Staphylococcus aureus strain FORC_012 isolate human sputum chromosome, complete genome	2815416	1020289	1072199	2815416	protease,transposase	Staphylococcus_phage(95.24%)	57	NA	NA
WP_001196354.1|1020289_1021291_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1021412_1021877_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159022.1|1021889_1023071_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_000493892.1|1023081_1023714_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000384185.1|1023720_1024752_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	4.0e-196
WP_001261668.1|1025244_1026747_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
WP_000221177.1|1027269_1027584_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
WP_000989121.1|1027583_1028876_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_001032833.1|1028962_1029817_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1030092_1030317_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671052.1|1030515_1030986_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_001153742.1|1031098_1031542_+	competence protein ComK	NA	NA	NA	NA	NA
WP_020978228.1|1031528_1031972_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.0	7.1e-57
WP_001168907.1|1032267_1032903_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1033342_1034056_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1034315_1034618_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1034873_1035239_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623477.1|1035235_1035589_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	94.9	1.0e-21
WP_000453317.1|1037586_1038420_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.6	3.5e-158
WP_000366163.1|1038631_1039540_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000933822.1|1039664_1040858_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109906.1|1041229_1042822_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_073392436.1|1043074_1043821_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	99.6	1.3e-143
WP_000672015.1|1043825_1044299_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	99.4	5.5e-84
WP_000718107.1|1044364_1044622_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778537.1|1044618_1045620_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	98.8	5.1e-188
WP_000348363.1|1045624_1047103_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	98.2	2.5e-284
WP_072460539.1|1047261_1047717_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	1.0e-79
WP_001789021.1|1048020_1048671_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	98.6	5.2e-56
WP_000070648.1|1048751_1049747_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	94.4	9.6e-70
WP_000669021.1|1049820_1050447_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	91.3	1.3e-88
WP_000627547.1|1050487_1050829_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	95.6	3.9e-55
WP_000414206.1|1050929_1051502_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	1.6e-24
WP_000864139.1|1051699_1052257_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	97.5	3.1e-78
WP_000375476.1|1052627_1052804_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070811.1|1052814_1053198_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000747802.1|1053882_1054329_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_001801861.1|1054779_1054875_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001791232.1|1054997_1055099_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000695818.1|1055446_1055821_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_001792823.1|1055842_1056247_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_020978241.1|1056426_1056843_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000072558.1|1057489_1058608_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	35.1	7.6e-39
WP_020978242.1|1058600_1060340_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.2	9.9e-288
WP_001791797.1|1060320_1060455_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038706.1|1060519_1061239_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.2	5.1e-129
WP_001038867.1|1061359_1062079_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
WP_001039444.1|1062136_1062859_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	100.0	6.4e-132
WP_001039432.1|1062983_1063691_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	97.9	1.6e-127
WP_001092759.1|1064654_1065233_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	59.6	1.9e-49
WP_000469595.1|1065706_1065925_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	81.9	1.4e-26
WP_000550252.1|1066180_1066654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000543854.1|1066658_1067450_+	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_000782463.1|1067820_1068804_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.4	1.8e-185
WP_061477622.1|1068805_1069741_-	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	99.7	5.1e-174
WP_000209099.1|1071104_1071893_+	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.0	1.3e-138
WP_001792814.1|1072070_1072199_+|transposase	IS3 family transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	66.7	6.6e-08
>prophage 6
NZ_CP010998	Staphylococcus aureus strain FORC_012 isolate human sputum chromosome, complete genome	2815416	1159251	1259007	2815416	tRNA,head,portal,holin,integrase,transposase,tail,capsid,protease,terminase	Staphylococcus_phage(85.71%)	116	1158645:1158669	1270047:1270071
1158645:1158669	attL	ACCCCAACTTGCATTGTCTGTAGAA	NA	NA	NA	NA
WP_000545370.1|1159251_1160679_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_000027917.1|1160691_1162149_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_000170162.1|1162150_1162453_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957020.1|1162820_1164359_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_031871503.1|1164447_1165647_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774565.1|1165659_1167663_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	5.8e-114
WP_000992921.1|1167666_1169859_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272071.1|1169855_1170548_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|1170719_1171022_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|1171130_1172426_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827764.1|1173286_1174453_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_020978260.1|1174483_1174810_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000669864.1|1175101_1175275_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|1175255_1175858_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040866.1|1176128_1176950_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
WP_000284433.1|1176942_1178412_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	3.5e-108
WP_000897635.1|1178595_1179672_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177828.1|1179691_1180486_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|1180557_1180665_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323163.1|1180675_1182238_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275706.1|1182442_1183540_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.9	2.5e-47
WP_000149686.1|1183911_1184472_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|1184524_1185454_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_000637587.1|1185646_1185820_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021226.1|1185871_1187251_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181322.1|1187370_1188399_-	lactonase family protein	NA	NA	NA	NA	NA
WP_001284658.1|1188857_1189238_-	penicillinase repressor BlaI	NA	NA	NA	NA	NA
WP_001096369.1|1189227_1190985_-	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA	NA
WP_000733621.1|1191091_1191937_+	penicillin-hydrolyzing class A beta-lactamase BlaZ	NA	A0A1B0VBP7	Salmonella_phage	34.3	3.4e-31
WP_020978265.1|1191987_1193667_-|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	77.4	5.5e-243
WP_025173837.1|1193990_1195310_+|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_000612780.1|1195678_1196089_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	54.2	1.4e-30
WP_000514485.1|1196117_1196483_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000026854.1|1196491_1198555_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_000706211.1|1198557_1199670_-|integrase	tyrosine-type recombinase/integrase	integrase	P97010	Streptococcus_pyogenes_phage	31.0	8.7e-11
WP_000267034.1|1200215_1200389_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188043.1|1200839_1201880_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713072.1|1201936_1202779_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|1202775_1203333_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|1203392_1203917_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|1204037_1204601_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|1204666_1205407_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|1205406_1206279_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645733.1|1206275_1206956_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991301.1|1206956_1207853_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691584.1|1207849_1208230_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|1208488_1208665_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|1208907_1209006_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068523.1|1209205_1210492_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001792928.1|1211116_1212865_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000669789.1|1213822_1214002_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|1214312_1214573_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000727649.1|1215649_1216099_+	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_020444758.1|1216193_1216652_-	amidase	NA	R9QTN8	Staphylococcus_phage	98.7	4.9e-85
WP_000919350.1|1217178_1217670_-	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_000861038.1|1217860_1218616_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|1218627_1218882_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|1218933_1219041_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|1219093_1219270_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000539688.1|1219419_1219716_-	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_001040261.1|1219773_1220061_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_001153681.1|1220107_1220260_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_000582165.1|1220249_1224035_-	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.5	0.0e+00
WP_000567408.1|1224050_1225535_-|tail	phage tail protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
WP_001796452.1|1225531_1230061_-|tail	phage tail tape measure protein	tail	A0A2I6PDK2	Staphylococcus_phage	99.8	0.0e+00
WP_001096355.1|1230305_1230656_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_071621395.1|1230705_1230930_-	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_000268733.1|1230971_1231616_-|tail	phage tail protein	tail	A0A1X9H0J2	Staphylococcus_phage	100.0	1.5e-119
WP_000565498.1|1231616_1232024_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114227.1|1232020_1232425_-	hypothetical protein	NA	G4KNQ5	Staphylococcus_phage	99.3	2.1e-68
WP_000755150.1|1232421_1232784_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000150936.1|1232767_1233052_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|1233041_1233326_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154559.1|1233345_1234491_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000642728.1|1234514_1235252_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000025274.1|1235235_1236423_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000625088.1|1236438_1238100_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|1238096_1238441_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988336.1|1238571_1238871_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000590122.1|1239102_1239519_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_001622114.1|1239546_1239747_-	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	98.5	4.0e-28
WP_000595265.1|1239746_1239896_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000592207.1|1239892_1240279_-	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000195803.1|1240275_1240482_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_001282074.1|1240478_1240724_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_001066447.1|1240760_1241297_-	hypothetical protein	NA	A0A0H3U2Z8	Staphylococcus_phage	100.0	7.2e-96
WP_001065097.1|1241446_1241701_-	DUF1024 family protein	NA	A0A0H3U469	Staphylococcus_phage	100.0	5.0e-39
WP_000131370.1|1241715_1241958_-	hypothetical protein	NA	Q4ZDP7	Staphylococcus_virus	95.0	2.1e-39
WP_000101288.1|1241961_1242330_-	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
WP_000401960.1|1242342_1242747_-	RusA family crossover junction endodeoxyribonuclease	NA	A0EWX6	Staphylococcus_phage	100.0	1.9e-72
WP_000338530.1|1242755_1242974_-	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000148321.1|1242980_1243874_-	DnaD domain-containing protein	NA	A0A2I6PDG7	Staphylococcus_phage	99.3	5.5e-141
WP_000610648.1|1243903_1244374_-	single-stranded DNA-binding protein	NA	A0EWX3	Staphylococcus_phage	98.7	1.3e-80
WP_073394849.1|1244374_1244992_-	MBL fold metallo-hydrolase	NA	A0A2I6PDI9	Staphylococcus_phage	100.0	9.1e-87
WP_000138475.1|1245072_1245993_-	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_000700555.1|1245994_1247938_-	AAA family ATPase	NA	S4V9K6	Staphylococcus_phage	100.0	0.0e+00
WP_001205732.1|1247946_1248210_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291510.1|1248218_1248479_-	DUF1108 family protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
WP_000165371.1|1248483_1248786_-	DUF2482 family protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
WP_000048129.1|1248880_1249042_-	DUF1270 family protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
WP_001120201.1|1249038_1249362_-	DUF771 domain-containing protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
WP_000762519.1|1249416_1249797_+	DUF2513 domain-containing protein	NA	Q9T1Z5	Staphylococcus_phage	99.2	3.4e-68
WP_001148862.1|1249783_1249981_-	hypothetical protein	NA	O80075	Staphylococcus_phage	87.7	3.5e-24
WP_001148605.1|1249996_1250749_-	oxidoreductase	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
WP_000128907.1|1250799_1251129_+	hypothetical protein	NA	M9NS98	Staphylococcus_phage	100.0	2.7e-53
WP_001025404.1|1251117_1251333_-	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000854074.1|1251329_1251611_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	96.5	4.6e-38
WP_001801500.1|1251607_1251781_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001031454.1|1251743_1252457_+	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_000759682.1|1252472_1253405_+	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_000591749.1|1253410_1253752_+	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000705248.1|1253955_1254138_+	hypothetical protein	NA	M9NSW6	Staphylococcus_phage	100.0	4.1e-27
WP_000825947.1|1254237_1254702_+	hypothetical protein	NA	A0EWV3	Staphylococcus_phage	100.0	1.1e-28
WP_000857191.1|1254760_1255798_+|integrase	site-specific integrase	integrase	A0EWV2	Staphylococcus_phage	100.0	9.1e-180
WP_000595326.1|1256916_1257933_-	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.3	5.1e-26
WP_000791419.1|1257954_1259007_-	bi-component leukocidin LukGH subunit H	NA	A0A2I6PER8	Staphylococcus_phage	31.8	2.4e-34
1270047:1270071	attR	ACCCCAACTTGCATTGTCTGTAGAA	NA	NA	NA	NA
>prophage 7
NZ_CP010998	Staphylococcus aureus strain FORC_012 isolate human sputum chromosome, complete genome	2815416	2726733	2734553	2815416		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|2726733_2727789_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|2727788_2728475_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|2728449_2728923_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093557.1|2729264_2729705_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637687.1|2729984_2730569_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|2730667_2731381_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941340.1|2731384_2731804_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|2731805_2732474_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|2732824_2733418_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217801.1|2733401_2734553_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.7	7.8e-23
>prophage 8
NZ_CP010998	Staphylococcus aureus strain FORC_012 isolate human sputum chromosome, complete genome	2815416	2746524	2760878	2815416		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663030.1|2746524_2747583_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197271.1|2747877_2748420_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429008.1|2749043_2749961_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.4	2.8e-07
WP_031760357.1|2750050_2750152_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|2750229_2751735_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930012.1|2752075_2752576_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068487.1|2752595_2753462_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|2754275_2754674_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|2754636_2756742_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|2756859_2757831_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|2758011_2758167_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|2758205_2759177_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|2759163_2760120_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616840.1|2760116_2760878_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
