bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NZ_CP013231	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	2.1|1059431|33|NZ_CP013231|CRISPRCasFinder	NZ_CP013231.1	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	96.97	33	1	0	1	33	201739	201707	117372-117459|1059408-1059486|1294357-1294507|1418274-1418467|2338066-2338166|2582356-2582448|2758166-2758251|2801494-2801575|2864305-2864587	1e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	201707-201739	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	1
NZ_CP013231	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	2.1|1059431|33|NZ_CP013231|CRISPRCasFinder	NZ_CP013231.1	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	96.97	33	1	0	1	33	409864	409832	117372-117459|1059408-1059486|1294357-1294507|1418274-1418467|2338066-2338166|2582356-2582448|2758166-2758251|2801494-2801575|2864305-2864587	1e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	409832-409864	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	1
NZ_CP013231	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	2.1|1059431|33|NZ_CP013231|CRISPRCasFinder	NZ_CP013231.1	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	96.97	33	1	0	1	33	724348	724380	117372-117459|1059408-1059486|1294357-1294507|1418274-1418467|2338066-2338166|2582356-2582448|2758166-2758251|2801494-2801575|2864305-2864587	1e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	724348-724380	CATTATAGTAAGCTGACTTTTCGTCAGCTTCTG	1
NZ_CP013231	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	2.1|1059431|33|NZ_CP013231|CRISPRCasFinder	NZ_CP013231.1	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	96.97	33	1	0	1	33	1695792	1695824	117372-117459|1059408-1059486|1294357-1294507|1418274-1418467|2338066-2338166|2582356-2582448|2758166-2758251|2801494-2801575|2864305-2864587	1e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	1695792-1695824	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	1
NZ_CP013231	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	2.1|1059431|33|NZ_CP013231|CRISPRCasFinder	NZ_CP013231.1	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	96.97	33	1	0	1	33	2758232	2758264	117372-117459|1059408-1059486|1294357-1294507|1418274-1418467|2338066-2338166|2582356-2582448|2758166-2758251|2801494-2801575|2864305-2864587	1e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	2758232-2758264	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	1
NZ_CP013231	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	2.1|1059431|33|NZ_CP013231|CRISPRCasFinder	NZ_CP013231.1	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	93.94	33	2	0	1	33	499115	499147	117372-117459|1059408-1059486|1294357-1294507|1418274-1418467|2338066-2338166|2582356-2582448|2758166-2758251|2801494-2801575|2864305-2864587	1e-07	47.5	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	499115-499147	CATTATTGTAAGCTGACTTTTCGTCATCTTCTG	2
NZ_CP013231	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	4.1|1418297|33|NZ_CP013231|CRT	NZ_CP013231.1	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	93.94	33	2	0	1	33	201739	201707	117372-117459|1059408-1059486|1294357-1294507|1418274-1418467|2338066-2338166|2582356-2582448|2758166-2758251|2801494-2801575|2864305-2864587	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	201707-201739	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NZ_CP013231	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	4.1|1418297|33|NZ_CP013231|CRT	NZ_CP013231.1	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	93.94	33	2	0	1	33	409864	409832	117372-117459|1059408-1059486|1294357-1294507|1418274-1418467|2338066-2338166|2582356-2582448|2758166-2758251|2801494-2801575|2864305-2864587	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	409832-409864	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NZ_CP013231	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	4.1|1418297|33|NZ_CP013231|CRT	NZ_CP013231.1	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	93.94	33	2	0	1	33	499115	499147	117372-117459|1059408-1059486|1294357-1294507|1418274-1418467|2338066-2338166|2582356-2582448|2758166-2758251|2801494-2801575|2864305-2864587	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	499115-499147	CATTATTGTAAGCTGACTTTTCGTCATCTTCTG	2
NZ_CP013231	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	4.1|1418297|33|NZ_CP013231|CRT	NZ_CP013231.1	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	93.94	33	2	0	1	33	1695792	1695824	117372-117459|1059408-1059486|1294357-1294507|1418274-1418467|2338066-2338166|2582356-2582448|2758166-2758251|2801494-2801575|2864305-2864587	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1695792-1695824	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NZ_CP013231	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	4.1|1418297|33|NZ_CP013231|CRT	NZ_CP013231.1	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	93.94	33	2	0	1	33	2758232	2758264	117372-117459|1059408-1059486|1294357-1294507|1418274-1418467|2338066-2338166|2582356-2582448|2758166-2758251|2801494-2801575|2864305-2864587	1e-07	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	2758232-2758264	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NZ_CP013231	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	4.2|1418353|36|NZ_CP013231|CRT	NZ_CP013231.1	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	100.00	36	0	0	1	36	201686	201651	117372-117459|1059408-1059486|1294357-1294507|1418274-1418467|2338066-2338166|2582356-2582448|2758166-2758251|2801494-2801575|2864305-2864587	6e-11	58.6	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	201651-201686	TAGAGAATTTCAAAAAGAAATTCTACAGACAATGCA	0
NZ_CP013231	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	4.2|1418353|36|NZ_CP013231|CRT	NZ_CP013231.1	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	97.22	36	1	0	1	36	902833	902798	117372-117459|1059408-1059486|1294357-1294507|1418274-1418467|2338066-2338166|2582356-2582448|2758166-2758251|2801494-2801575|2864305-2864587	5e-10	55.5	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	902798-902833	TAGAGAATTTCGAAAAGAAATTCTACAGACAATGCA	1
NZ_CP013231	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	4.2|1418353|36|NZ_CP013231|CRT	NZ_CP013231.1	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	94.44	36	2	0	1	36	724287	724322	117372-117459|1059408-1059486|1294357-1294507|1418274-1418467|2338066-2338166|2582356-2582448|2758166-2758251|2801494-2801575|2864305-2864587	5e-09	52.3	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	724287-724322	TGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTA	2
NZ_CP013231	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	4.2|1418353|36|NZ_CP013231|CRT	NZ_CP013231.1	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	94.44	36	2	0	1	36	1070234	1070269	117372-117459|1059408-1059486|1294357-1294507|1418274-1418467|2338066-2338166|2582356-2582448|2758166-2758251|2801494-2801575|2864305-2864587	5e-09	52.3	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1070234-1070269	TGCATTGTCTGTAGAATTTCCTTTCGAAATTCTCTA	2
NZ_CP013231	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	4.3|1418412|33|NZ_CP013231|CRT	NZ_CP013231.1	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	93.94	33	2	0	1	33	201739	201707	117372-117459|1059408-1059486|1294357-1294507|1418274-1418467|2338066-2338166|2582356-2582448|2758166-2758251|2801494-2801575|2864305-2864587	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	201707-201739	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NZ_CP013231	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	4.3|1418412|33|NZ_CP013231|CRT	NZ_CP013231.1	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	93.94	33	2	0	1	33	409864	409832	117372-117459|1059408-1059486|1294357-1294507|1418274-1418467|2338066-2338166|2582356-2582448|2758166-2758251|2801494-2801575|2864305-2864587	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	409832-409864	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NZ_CP013231	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	4.3|1418412|33|NZ_CP013231|CRT	NZ_CP013231.1	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	93.94	33	2	0	1	33	1695792	1695824	117372-117459|1059408-1059486|1294357-1294507|1418274-1418467|2338066-2338166|2582356-2582448|2758166-2758251|2801494-2801575|2864305-2864587	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	1695792-1695824	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NZ_CP013231	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	4.3|1418412|33|NZ_CP013231|CRT	NZ_CP013231.1	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	93.94	33	2	0	1	33	2758232	2758264	117372-117459|1059408-1059486|1294357-1294507|1418274-1418467|2338066-2338166|2582356-2582448|2758166-2758251|2801494-2801575|2864305-2864587	1e-07	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	2758232-2758264	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NZ_CP013231	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	7.1|2758196|26|NZ_CP013231|CRISPRCasFinder	NZ_CP013231.1	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	96.15	26	1	0	1	26	1861212	1861237	117372-117459|1059408-1059486|1294357-1294507|1418274-1418467|2338066-2338166|2582356-2582448|2758166-2758251|2801494-2801575|2864305-2864587	1e-05	39.6	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	1861212-1861237	CCGCCAGCTTCTATGTTGGGGCCCCG	1
NZ_CP013231	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	7.1|2758196|26|NZ_CP013231|CRISPRCasFinder	NZ_CP013231.1	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	96.15	26	1	0	1	26	1861268	1861293	117372-117459|1059408-1059486|1294357-1294507|1418274-1418467|2338066-2338166|2582356-2582448|2758166-2758251|2801494-2801575|2864305-2864587	1e-05	39.6	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	1861268-1861293	CCGCCAGCTTCTTTGTTGGGGCCCCG	1
NZ_CP013231	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	7.1|2758196|26|NZ_CP013231|CRISPRCasFinder	NZ_CP013231.1	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	96.15	26	1	0	1	26	2721158	2721133	117372-117459|1059408-1059486|1294357-1294507|1418274-1418467|2338066-2338166|2582356-2582448|2758166-2758251|2801494-2801575|2864305-2864587	1e-05	39.6	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	2721133-2721158	CGGGGCCCCAACACAGAAGCAGGCGG	1
NZ_CP013231	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	7.1|2758196|26|NZ_CP013231|CRISPRCasFinder	NZ_CP013231.1	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	92.31	26	2	0	1	26	2721214	2721189	117372-117459|1059408-1059486|1294357-1294507|1418274-1418467|2338066-2338166|2582356-2582448|2758166-2758251|2801494-2801575|2864305-2864587	1e-04	36.5	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	2721189-2721214	CGGGGCCCCAACATAGAAGCAGGCGG	2
NZ_CP013231	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	7.1|2758196|26|NZ_CP013231|CRISPRCasFinder	NZ_CP013231.1	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	92.31	26	2	0	1	26	2864304	2864279	117372-117459|1059408-1059486|1294357-1294507|1418274-1418467|2338066-2338166|2582356-2582448|2758166-2758251|2801494-2801575|2864305-2864587	1e-04	36.5	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	2864279-2864304	CGGGGCCCCAACACAGAGGCTGGTGG	2
NZ_CP013231	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	8.1|2801518|34|NZ_CP013231|CRISPRCasFinder	NZ_CP013231.1	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	100.00	34	0	0	1	34	409910	409877	117372-117459|1059408-1059486|1294357-1294507|1418274-1418467|2338066-2338166|2582356-2582448|2758166-2758251|2801494-2801575|2864305-2864587	5e-10	55.5	1.0	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	409877-409910	ATGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	0
NZ_CP013231	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	8.1|2801518|34|NZ_CP013231|CRISPRCasFinder	NZ_CP013231.1	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	100.00	34	0	0	1	34	499069	499102	117372-117459|1059408-1059486|1294357-1294507|1418274-1418467|2338066-2338166|2582356-2582448|2758166-2758251|2801494-2801575|2864305-2864587	5e-10	55.5	1.0	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	499069-499102	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	0
NZ_CP013231	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	9.1|2864335|26|NZ_CP013231|CRT	NZ_CP013231.1	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	96.15	26	1	0	1	26	2864279	2864304	117372-117459|1059408-1059486|1294357-1294507|1418274-1418467|2338066-2338166|2582356-2582448|2758166-2758251|2801494-2801575|2864305-2864587	1e-05	39.6	1.0	CGGGGCCCCAACACAGAGGCTGGCGG	2864279-2864304	CGGGGCCCCAACACAGAGGCTGGTGG	1
NZ_CP013231	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	9.1|2864335|26|NZ_CP013231|CRT	NZ_CP013231.1	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	92.31	26	2	0	1	26	1861237	1861212	117372-117459|1059408-1059486|1294357-1294507|1418274-1418467|2338066-2338166|2582356-2582448|2758166-2758251|2801494-2801575|2864305-2864587	1e-04	36.5	1.0	CGGGGCCCCAACACAGAGGCTGGCGG	1861212-1861237	CCGCCAGCTTCTATGTTGGGGCCCCG	2
NZ_CP013231	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	9.1|2864335|26|NZ_CP013231|CRT	NZ_CP013231.1	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	92.31	26	2	0	1	26	1861293	1861268	117372-117459|1059408-1059486|1294357-1294507|1418274-1418467|2338066-2338166|2582356-2582448|2758166-2758251|2801494-2801575|2864305-2864587	1e-04	36.5	1.0	CGGGGCCCCAACACAGAGGCTGGCGG	1861268-1861293	CCGCCAGCTTCTTTGTTGGGGCCCCG	2
NZ_CP013231	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	9.1|2864335|26|NZ_CP013231|CRT	NZ_CP013231.1	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	92.31	26	2	0	1	26	2721133	2721158	117372-117459|1059408-1059486|1294357-1294507|1418274-1418467|2338066-2338166|2582356-2582448|2758166-2758251|2801494-2801575|2864305-2864587	1e-04	36.5	1.0	CGGGGCCCCAACACAGAGGCTGGCGG	2721133-2721158	CGGGGCCCCAACACAGAAGCAGGCGG	2
NZ_CP013231	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	9.3|2864449|26|NZ_CP013231|CRT	NZ_CP013231.1	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	96.15	26	1	0	1	26	2758277	2758252	117372-117459|1059408-1059486|1294357-1294507|1418274-1418467|2338066-2338166|2582356-2582448|2758166-2758251|2801494-2801575|2864305-2864587	1e-05	39.6	1.0	CGGGGCCCCAACACAGAAGCTGGCGA	2758252-2758277	TCGTCAGCTTCTGTGTTGGGGCCCCG	1
NZ_CP013231	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	9.3|2864449|26|NZ_CP013231|CRT	NZ_CP013231.1	Staphylococcus aureus strain UTSW MRSA 55 chromosome, complete genome	92.31	26	2	0	1	26	2299400	2299425	117372-117459|1059408-1059486|1294357-1294507|1418274-1418467|2338066-2338166|2582356-2582448|2758166-2758251|2801494-2801575|2864305-2864587	1e-04	36.5	1.0	CGGGGCCCCAACACAGAAGCTGGCGA	2299400-2299425	CGGGGCCCCAACAAAGAAGCTGACGA	2
