assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001584165.1_ASM158416v1	NZ_CP013233	Collimonas arenae strain Ter10 chromosome, complete genome	1	472917-472987	1	CRISPRCasFinder	no		csa3,WYL,DinG,cas3,DEDDh	Orphan	TAAATTGACTCTGTCCCCATTTA	23	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DinG,cas3,DEDDh	NA|77aa|up_4|NZ_CP013233.1_468459_468690_+,NA	NA|167aa|up_9|NZ_CP013233.1_459693_460194_+	PRK12525, PRK12525, RNA polymerase sigma factor; Provisional	NA|319aa|up_8|NZ_CP013233.1_460190_461147_+	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|524aa|up_7|NZ_CP013233.1_464403_465975_+	pfam13098, Thioredoxin_2, Thioredoxin-like domain	NA|224aa|up_6|NZ_CP013233.1_466110_466782_+	cd03189, GST_C_GTT1_like, C-terminal, alpha helical domain of GTT1-like Glutathione S-transferases	NA|498aa|up_5|NZ_CP013233.1_466960_468454_+	PRK08292, PRK08292, AMP nucleosidase; Provisional	NA|77aa|up_4|NZ_CP013233.1_468459_468690_+	NA	NA|394aa|up_3|NZ_CP013233.1_468691_469873_-	cd06180, MFS_YjiJ, Uncharacterized protein YjiJ and similar proteins of the Major Facilitator Superfamily of transporters	NA|364aa|up_2|NZ_CP013233.1_469924_471016_-	cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites	NA|294aa|up_1|NZ_CP013233.1_471162_472044_+	cd08442, PBP2_YofA_SoxR_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators, YofA and SoxR, contains the type 2 periplasmic binding fold	NA|244aa|up_0|NZ_CP013233.1_472155_472887_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|1563aa|down_0|NZ_CP013233.1_473057_477746_+	PRK11750, gltB, glutamate synthase subunit alpha; Provisional	NA|488aa|down_1|NZ_CP013233.1_477872_479336_+	PRK12810, gltD, glutamate synthase subunit beta; Reviewed	NA|268aa|down_2|NZ_CP013233.1_479570_480374_+	COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|263aa|down_3|NZ_CP013233.1_480373_481162_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|158aa|down_4|NZ_CP013233.1_481345_481819_+	TIGR04430, OM_asym_MlaD, outer membrane lipid asymmetry maintenance protein MlaD	NA|245aa|down_5|NZ_CP013233.1_481815_482550_+	pfam04333, MlaA, MlaA lipoprotein	NA|211aa|down_6|NZ_CP013233.1_482766_483399_+	pfam05494, MlaC, MlaC protein	NA|102aa|down_7|NZ_CP013233.1_483487_483793_+	pfam13466, STAS_2, STAS domain	NA|318aa|down_8|NZ_CP013233.1_483993_484947_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|252aa|down_9|NZ_CP013233.1_484946_485702_+	PRK15066, PRK15066, inner membrane transport permease; Provisional
GCF_001584165.1_ASM158416v1	NZ_CP013233	Collimonas arenae strain Ter10 chromosome, complete genome	2	2233671-2235769	1	CRT	no		csa3,WYL,DinG,cas3,DEDDh	Orphan	TGACNTCGNTGTCGACNTCNGCTTCGACNGGNATNACTTCG	41	9	17	2233808-2233841|2233979-2234012|2234054-2234087|2234054-2234087|2234129-2234162|2234129-2234162|2234129-2234162|2234879-2234912|2235029-2235062|2235029-2235062|2235254-2235287|2235479-2235512|2235479-2235512|2235479-2235512|2235695-2235728|2235695-2235728|2235695-2235728	NZ_CP013233.1_2233637-2233670|NZ_CP013233.1_3864181-3864148|NZ_CP013233.1_3864532-3864499|NZ_CP013233.1_3867820-3867787|NZ_CP013233.1_3864991-3864958|NZ_CP013233.1_3866539-3866506|NZ_CP013233.1_3869014-3868981|NZ_CP013233.1_4393393-4393426|NZ_CP013233.1_3864532-3864499|NZ_CP013233.1_2844785-2844818|NZ_CP013233.1_3864820-3864787|NZ_CP013233.1_3864532-3864499|NZ_CP013233.1_3867820-3867787|NZ_CP013233.1_3871045-3871012|NZ_CP013233.1_3864532-3864499|NZ_CP013233.1_3867820-3867787|NZ_CP013233.1_3871045-3871012	NA	27	27	Orphan	csa3,WYL,DinG,cas3,DEDDh	NA,NA	NA|135aa|up_9|NZ_CP013233.1_2224908_2225313_+	pfam18029, Glyoxalase_6, Glyoxalase-like domain	NA|258aa|up_8|NZ_CP013233.1_2225547_2226321_+	COG4705, COG4705, Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]	NA|249aa|up_7|NZ_CP013233.1_2226391_2227138_+	COG4705, COG4705, Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]	NA|221aa|up_6|NZ_CP013233.1_2227192_2227855_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|451aa|up_5|NZ_CP013233.1_2227830_2229183_+	PRK10337, PRK10337, sensor protein QseC; Provisional	NA|138aa|up_4|NZ_CP013233.1_2229225_2229639_-	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|418aa|up_3|NZ_CP013233.1_2229708_2230962_+	cd04733, OYE_like_2_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 2	NA|220aa|up_2|NZ_CP013233.1_2230988_2231648_+	pfam01596, Methyltransf_3, O-methyltransferase	NA|93aa|up_1|NZ_CP013233.1_2231697_2231976_-	pfam13663, DUF4148, Domain of unknown function (DUF4148)	NA|31aa|up_0|NZ_CP013233.1_2232778_2232871_+	pfam13018, ESPR, Extended Signal Peptide of Type V secretion system	NA|148aa|down_0|NZ_CP013233.1_2240456_2240900_+	pfam13211, DUF4019, Protein of unknown function (DUF4019)	NA|344aa|down_1|NZ_CP013233.1_2240957_2241989_-	pfam13621, Cupin_8, Cupin-like domain	NA|449aa|down_2|NZ_CP013233.1_2242541_2243888_-	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|310aa|down_3|NZ_CP013233.1_2244042_2244972_+	TIGR01433, precursor_Cytochrome_o_subunit_2_Oxidase, cytochrome o ubiquinol oxidase subunit II	NA|668aa|down_4|NZ_CP013233.1_2245074_2247078_+	TIGR02843, Cytochrome_bo3_ubiquinol_oxidase_subunit_1, cytochrome o ubiquinol oxidase, subunit I	NA|212aa|down_5|NZ_CP013233.1_2247070_2247706_+	TIGR02842, Cytochrome_bo3_ubiquinol_oxidase_subunit_3, cytochrome o ubiquinol oxidase, subunit III	NA|152aa|down_6|NZ_CP013233.1_2247702_2248158_+	TIGR02847, Cytochrome_bo3_ubiquinol_oxidase_subunit_4, cytochrome o ubiquinol oxidase subunit IV	NA|300aa|down_7|NZ_CP013233.1_2248154_2249054_+	COG3346, COG3346, Uncharacterized conserved protein [Function unknown]	NA|450aa|down_8|NZ_CP013233.1_2249037_2250387_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|179aa|down_9|NZ_CP013233.1_2250376_2250913_+	COG4567, COG4567, Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
GCF_001584165.1_ASM158416v1	NZ_CP013233	Collimonas arenae strain Ter10 chromosome, complete genome	3	2602184-2602290	2	CRISPRCasFinder	no		csa3,WYL,DinG,cas3,DEDDh	Orphan	GCCAATGGGCCGCTGCCCGAACCAGTTGCGCC	32	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DinG,cas3,DEDDh	NA|69aa|up_5|NZ_CP013233.1_2596005_2596212_+,NA|206aa|up_4|NZ_CP013233.1_2596681_2597299_+,NA|67aa|up_0|NZ_CP013233.1_2601436_2601637_-,NA	NA|357aa|up_9|NZ_CP013233.1_2591432_2592503_-	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional	NA|216aa|up_8|NZ_CP013233.1_2592564_2593212_-	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit	NA|41aa|up_7|NZ_CP013233.1_2593289_2593412_-	COG5510, COG5510, Predicted small secreted protein [Function unknown]	NA|291aa|up_6|NZ_CP013233.1_2595057_2595930_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|69aa|up_5|NZ_CP013233.1_2596005_2596212_+	NA	NA|206aa|up_4|NZ_CP013233.1_2596681_2597299_+	NA	NA|269aa|up_3|NZ_CP013233.1_2597396_2598203_+	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|101aa|up_2|NZ_CP013233.1_2598224_2598527_+	pfam01527, HTH_Tnp_1, Transposase	NA|341aa|up_1|NZ_CP013233.1_2598824_2599847_+	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|67aa|up_0|NZ_CP013233.1_2601436_2601637_-	NA	NA|174aa|down_0|NZ_CP013233.1_2602610_2603132_-	pfam15984, Collagen_mid, Bacterial collagen, middle region	NA|240aa|down_1|NZ_CP013233.1_2604151_2604871_+	PRK10871, nlpD, murein hydrolase activator NlpD	NA|411aa|down_2|NZ_CP013233.1_2604941_2606174_-	pfam11925, DUF3443, Protein of unknown function (DUF3443)	NA|159aa|down_3|NZ_CP013233.1_2606186_2606663_-	pfam11005, DUF2844, Protein of unknown function (DUF2844)	NA|71aa|down_4|NZ_CP013233.1_2608237_2608450_-	pfam12843, QSregVF_b, Putative quorum-sensing-regulated virulence factor	NA|235aa|down_5|NZ_CP013233.1_2608675_2609380_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|861aa|down_6|NZ_CP013233.1_2609387_2611970_+	TIGR03434, ADOP, Acidobacterial duplicated orphan permease	NA|361aa|down_7|NZ_CP013233.1_2611971_2613054_+	pfam07143, CrtC, CrtC N-terminal lipocalin domain	NA|340aa|down_8|NZ_CP013233.1_2613165_2614185_+	pfam09925, DUF2157, Predicted membrane protein (DUF2157)	NA|363aa|down_9|NZ_CP013233.1_2614181_2615270_+	pfam14351, DUF4401, Domain of unknown function (DUF4401)
GCF_001584165.1_ASM158416v1	NZ_CP013233	Collimonas arenae strain Ter10 chromosome, complete genome	4	2842515-2842630	3	CRISPRCasFinder	no		csa3,WYL,DinG,cas3,DEDDh	Orphan	AGGCACTTAGCAACTTTGCCGTAGCCATGGGC	32	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DinG,cas3,DEDDh	NA|65aa|up_7|NZ_CP013233.1_2833818_2834013_+,NA|152aa|up_1|NZ_CP013233.1_2840873_2841329_-,NA|117aa|up_0|NZ_CP013233.1_2841334_2841685_-,NA	NA|195aa|up_9|NZ_CP013233.1_2831857_2832442_+	pfam12306, PixA, Inclusion body protein	NA|162aa|up_8|NZ_CP013233.1_2832537_2833023_+	COG4875, COG4875, Uncharacterized protein conserved in bacteria with a cystatin-like fold [Function unknown]	NA|65aa|up_7|NZ_CP013233.1_2833818_2834013_+	NA	NA|402aa|up_6|NZ_CP013233.1_2834083_2835289_-	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|404aa|up_5|NZ_CP013233.1_2835285_2836497_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|299aa|up_4|NZ_CP013233.1_2836608_2837505_+	cd08476, PBP2_CrgA_like_7, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|155aa|up_3|NZ_CP013233.1_2837591_2838056_-	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|210aa|up_2|NZ_CP013233.1_2838189_2838819_+	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|152aa|up_1|NZ_CP013233.1_2840873_2841329_-	NA	NA|117aa|up_0|NZ_CP013233.1_2841334_2841685_-	NA	NA|117aa|down_0|NZ_CP013233.1_2850928_2851279_-	cd06150, YjgF_YER057c_UK114_like_2, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|289aa|down_1|NZ_CP013233.1_2851326_2852193_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|218aa|down_2|NZ_CP013233.1_2852433_2853087_-	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit	NA|233aa|down_3|NZ_CP013233.1_2853107_2853806_-	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]	NA|190aa|down_4|NZ_CP013233.1_2853988_2854558_+	PRK09390, fixJ, response regulator FixJ; Provisional	NA|140aa|down_5|NZ_CP013233.1_2854565_2854985_-	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|564aa|down_6|NZ_CP013233.1_2855165_2856857_+	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]	NA|187aa|down_7|NZ_CP013233.1_2857019_2857580_-	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|105aa|down_8|NZ_CP013233.1_2857704_2858019_-	pfam10993, DUF2818, Protein of unknown function (DUF2818)	NA|502aa|down_9|NZ_CP013233.1_2858023_2859529_-	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN
