assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001584205.1_ASM158420v1	NZ_CP013235	Collimonas arenae strain Ter282, complete genome	1	472990-473060	1	CRISPRCasFinder	no		csa3,cas3,WYL,DinG,PrimPol,DEDDh	Orphan	TAAATTGACTCTGTCCCCATTTA	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DinG,PrimPol,DEDDh	NA|77aa|up_4|NZ_CP013235.1_468532_468763_+,NA	NA|319aa|up_9|NZ_CP013235.1_460262_461219_+	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|885aa|up_8|NZ_CP013235.1_461730_464385_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|524aa|up_7|NZ_CP013235.1_464476_466048_+	pfam13098, Thioredoxin_2, Thioredoxin-like domain	NA|224aa|up_6|NZ_CP013235.1_466183_466855_+	cd03189, GST_C_GTT1_like, C-terminal, alpha helical domain of GTT1-like Glutathione S-transferases	NA|498aa|up_5|NZ_CP013235.1_467033_468527_+	PRK08292, PRK08292, AMP nucleosidase; Provisional	NA|77aa|up_4|NZ_CP013235.1_468532_468763_+	NA	NA|394aa|up_3|NZ_CP013235.1_468764_469946_-	cd06180, MFS_YjiJ, Uncharacterized protein YjiJ and similar proteins of the Major Facilitator Superfamily of transporters	NA|364aa|up_2|NZ_CP013235.1_469997_471089_-	cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites	NA|294aa|up_1|NZ_CP013235.1_471235_472117_+	cd08442, PBP2_YofA_SoxR_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators, YofA and SoxR, contains the type 2 periplasmic binding fold	NA|244aa|up_0|NZ_CP013235.1_472228_472960_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|488aa|down_0|NZ_CP013235.1_477944_479408_+	PRK12810, gltD, glutamate synthase subunit beta; Reviewed	NA|268aa|down_1|NZ_CP013235.1_479642_480446_+	COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|263aa|down_2|NZ_CP013235.1_480445_481234_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|158aa|down_3|NZ_CP013235.1_481417_481891_+	TIGR04430, OM_asym_MlaD, outer membrane lipid asymmetry maintenance protein MlaD	NA|245aa|down_4|NZ_CP013235.1_481887_482622_+	pfam04333, MlaA, MlaA lipoprotein	NA|211aa|down_5|NZ_CP013235.1_482838_483471_+	pfam05494, MlaC, MlaC protein	NA|102aa|down_6|NZ_CP013235.1_483559_483865_+	pfam13466, STAS_2, STAS domain	NA|318aa|down_7|NZ_CP013235.1_484065_485019_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|252aa|down_8|NZ_CP013235.1_485018_485774_+	PRK15066, PRK15066, inner membrane transport permease; Provisional	NA|79aa|down_9|NZ_CP013235.1_485846_486083_+	COG5007, COG5007, Predicted transcriptional regulator, BolA superfamily [Transcription]
GCF_001584205.1_ASM158420v1	NZ_CP013235	Collimonas arenae strain Ter282, complete genome	2	2234036-2236134	1	CRT	no		csa3,cas3,WYL,DinG,PrimPol,DEDDh	Orphan	TGACNTCGNTGTCGACNTCNGCTTCGACNGGNATNACTTCG	41	9	17	2234173-2234206|2234344-2234377|2234419-2234452|2234419-2234452|2234494-2234527|2234494-2234527|2234494-2234527|2235244-2235277|2235394-2235427|2235394-2235427|2235619-2235652|2235844-2235877|2235844-2235877|2235844-2235877|2236060-2236093|2236060-2236093|2236060-2236093	NZ_CP013235.1_2234002-2234035|NZ_CP013235.1_3849433-3849400|NZ_CP013235.1_3849784-3849751|NZ_CP013235.1_3853072-3853039|NZ_CP013235.1_3850243-3850210|NZ_CP013235.1_3851791-3851758|NZ_CP013235.1_3854266-3854233|NZ_CP013235.1_4378723-4378756|NZ_CP013235.1_3849784-3849751|NZ_CP013235.1_2833077-2833110|NZ_CP013235.1_3850072-3850039|NZ_CP013235.1_3849784-3849751|NZ_CP013235.1_3853072-3853039|NZ_CP013235.1_3856297-3856264|NZ_CP013235.1_3849784-3849751|NZ_CP013235.1_3853072-3853039|NZ_CP013235.1_3856297-3856264	NA	27	27	Orphan	csa3,cas3,WYL,DinG,PrimPol,DEDDh	NA,NA	NA|135aa|up_9|NZ_CP013235.1_2225273_2225678_+	pfam18029, Glyoxalase_6, Glyoxalase-like domain	NA|258aa|up_8|NZ_CP013235.1_2225912_2226686_+	COG4705, COG4705, Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]	NA|249aa|up_7|NZ_CP013235.1_2226756_2227503_+	COG4705, COG4705, Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]	NA|221aa|up_6|NZ_CP013235.1_2227557_2228220_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|451aa|up_5|NZ_CP013235.1_2228195_2229548_+	PRK10337, PRK10337, sensor protein QseC; Provisional	NA|138aa|up_4|NZ_CP013235.1_2229590_2230004_-	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|418aa|up_3|NZ_CP013235.1_2230073_2231327_+	cd04733, OYE_like_2_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 2	NA|220aa|up_2|NZ_CP013235.1_2231353_2232013_+	pfam01596, Methyltransf_3, O-methyltransferase	NA|93aa|up_1|NZ_CP013235.1_2232062_2232341_-	pfam13663, DUF4148, Domain of unknown function (DUF4148)	NA|31aa|up_0|NZ_CP013235.1_2233143_2233236_+	pfam13018, ESPR, Extended Signal Peptide of Type V secretion system	NA|148aa|down_0|NZ_CP013235.1_2240822_2241266_+	pfam13211, DUF4019, Protein of unknown function (DUF4019)	NA|344aa|down_1|NZ_CP013235.1_2241323_2242355_-	pfam13621, Cupin_8, Cupin-like domain	NA|449aa|down_2|NZ_CP013235.1_2242907_2244254_-	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|310aa|down_3|NZ_CP013235.1_2244408_2245338_+	TIGR01433, precursor_Cytochrome_o_subunit_2_Oxidase, cytochrome o ubiquinol oxidase subunit II	NA|668aa|down_4|NZ_CP013235.1_2245440_2247444_+	TIGR02843, Cytochrome_bo3_ubiquinol_oxidase_subunit_1, cytochrome o ubiquinol oxidase, subunit I	NA|212aa|down_5|NZ_CP013235.1_2247436_2248072_+	TIGR02842, Cytochrome_bo3_ubiquinol_oxidase_subunit_3, cytochrome o ubiquinol oxidase, subunit III	NA|152aa|down_6|NZ_CP013235.1_2248068_2248524_+	TIGR02847, Cytochrome_bo3_ubiquinol_oxidase_subunit_4, cytochrome o ubiquinol oxidase subunit IV	NA|300aa|down_7|NZ_CP013235.1_2248520_2249420_+	COG3346, COG3346, Uncharacterized conserved protein [Function unknown]	NA|450aa|down_8|NZ_CP013235.1_2249403_2250753_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|179aa|down_9|NZ_CP013235.1_2250742_2251279_+	COG4567, COG4567, Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
GCF_001584205.1_ASM158420v1	NZ_CP013235	Collimonas arenae strain Ter282, complete genome	3	2590414-2590520	2	CRISPRCasFinder	no		csa3,cas3,WYL,DinG,PrimPol,DEDDh	Orphan	GCCAATGGGCCGCTGCCCGAACCAGTTGCGCC	32	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DinG,PrimPol,DEDDh	NA|69aa|up_6|NZ_CP013235.1_2584231_2584438_+,NA|206aa|up_5|NZ_CP013235.1_2584907_2585525_+,NA|65aa|up_0|NZ_CP013235.1_2589673_2589868_-,NA	NA|41aa|up_9|NZ_CP013235.1_2581514_2581637_-	COG5510, COG5510, Predicted small secreted protein [Function unknown]	NA|467aa|up_8|NZ_CP013235.1_2581673_2583074_-	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit	NA|291aa|up_7|NZ_CP013235.1_2583283_2584156_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|69aa|up_6|NZ_CP013235.1_2584231_2584438_+	NA	NA|206aa|up_5|NZ_CP013235.1_2584907_2585525_+	NA	NA|269aa|up_4|NZ_CP013235.1_2585622_2586429_+	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|98aa|up_3|NZ_CP013235.1_2586450_2586744_+	pfam01527, HTH_Tnp_1, Transposase	NA|341aa|up_2|NZ_CP013235.1_2587051_2588074_+	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|522aa|up_1|NZ_CP013235.1_2588104_2589670_+	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]	NA|65aa|up_0|NZ_CP013235.1_2589673_2589868_-	NA	NA|258aa|down_0|NZ_CP013235.1_2592333_2593107_+	PRK10871, nlpD, murein hydrolase activator NlpD	NA|411aa|down_1|NZ_CP013235.1_2593177_2594410_-	pfam11925, DUF3443, Protein of unknown function (DUF3443)	NA|159aa|down_2|NZ_CP013235.1_2594422_2594899_-	pfam11005, DUF2844, Protein of unknown function (DUF2844)	NA|451aa|down_3|NZ_CP013235.1_2595060_2596413_-	cd13520, PBP2_TAXI_TRAP, Substrate binding domain of TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold	NA|71aa|down_4|NZ_CP013235.1_2596474_2596687_-	pfam12843, QSregVF_b, Putative quorum-sensing-regulated virulence factor	NA|235aa|down_5|NZ_CP013235.1_2596912_2597617_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|861aa|down_6|NZ_CP013235.1_2597624_2600207_+	TIGR03434, ADOP, Acidobacterial duplicated orphan permease	NA|361aa|down_7|NZ_CP013235.1_2600208_2601291_+	pfam07143, CrtC, CrtC N-terminal lipocalin domain	NA|355aa|down_8|NZ_CP013235.1_2601357_2602422_+	pfam09925, DUF2157, Predicted membrane protein (DUF2157)	NA|377aa|down_9|NZ_CP013235.1_2602376_2603507_+	pfam14351, DUF4401, Domain of unknown function (DUF4401)
GCF_001584205.1_ASM158420v1	NZ_CP013235	Collimonas arenae strain Ter282, complete genome	4	2830807-2830922	3	CRISPRCasFinder	no		csa3,cas3,WYL,DinG,PrimPol,DEDDh	Orphan	AGGCACTTAGCAACTTTGCCGTAGCCATGGGC	32	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DinG,PrimPol,DEDDh	NA|65aa|up_7|NZ_CP013235.1_2822109_2822304_+,NA|152aa|up_1|NZ_CP013235.1_2829165_2829621_-,NA|117aa|up_0|NZ_CP013235.1_2829626_2829977_-,NA	NA|162aa|up_9|NZ_CP013235.1_2820827_2821313_+	COG4875, COG4875, Uncharacterized protein conserved in bacteria with a cystatin-like fold [Function unknown]	NA|69aa|up_8|NZ_CP013235.1_2821662_2821869_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|65aa|up_7|NZ_CP013235.1_2822109_2822304_+	NA	NA|404aa|up_6|NZ_CP013235.1_2823576_2824788_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|299aa|up_5|NZ_CP013235.1_2824899_2825796_+	cd08476, PBP2_CrgA_like_7, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|155aa|up_4|NZ_CP013235.1_2825882_2826347_-	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|210aa|up_3|NZ_CP013235.1_2826480_2827110_+	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|559aa|up_2|NZ_CP013235.1_2827205_2828882_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|152aa|up_1|NZ_CP013235.1_2829165_2829621_-	NA	NA|117aa|up_0|NZ_CP013235.1_2829626_2829977_-	NA	NA|756aa|down_0|NZ_CP013235.1_2836935_2839203_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|117aa|down_1|NZ_CP013235.1_2839221_2839572_-	cd06150, YjgF_YER057c_UK114_like_2, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|289aa|down_2|NZ_CP013235.1_2839619_2840486_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|218aa|down_3|NZ_CP013235.1_2840727_2841381_-	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit	NA|233aa|down_4|NZ_CP013235.1_2841401_2842100_-	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]	NA|190aa|down_5|NZ_CP013235.1_2842282_2842852_+	PRK09390, fixJ, response regulator FixJ; Provisional	NA|140aa|down_6|NZ_CP013235.1_2842859_2843279_-	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|564aa|down_7|NZ_CP013235.1_2843459_2845151_+	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]	NA|187aa|down_8|NZ_CP013235.1_2845313_2845874_-	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|105aa|down_9|NZ_CP013235.1_2845998_2846313_-	pfam10993, DUF2818, Protein of unknown function (DUF2818)
