The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP014768	Shigella sp. PAMC 28760 chromosome, complete genome	4558287	1314034	1327749	4558287	integrase,lysis	Enterobacteria_phage(62.5%)	21	1312802:1312815	1320119:1320132
1312802:1312815	attL	GTTGCGATTTTATT	NA	NA	NA	NA
WP_001318654.1|1314034_1315198_-|integrase	site-specific integrase	integrase	A0A088CD23	Shigella_phage	86.0	1.3e-198
WP_000488419.1|1315396_1315675_-	DUF4222 domain-containing protein	NA	M1FPC8	Enterobacteria_phage	98.9	1.7e-48
WP_000763373.1|1315722_1315941_-	TraR/DksA family transcriptional regulator	NA	M1FQT7	Enterobacteria_phage	95.8	1.8e-34
WP_001386642.1|1316039_1316321_-	cell division protein ZapA	NA	A0A0P0ZE02	Stx2-converting_phage	98.9	5.5e-47
WP_001070454.1|1317036_1317369_+	SMR family multidrug efflux protein EmrE	NA	NA	NA	NA	NA
WP_001299444.1|1317416_1317566_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000709082.1|1317623_1319150_+	recombinase family protein	NA	Q3HQV4	Burkholderia_phage	27.8	7.9e-31
WP_001306955.1|1319614_1320166_+	Raf kinase inhibitor-like protein YbcL	NA	NA	NA	NA	NA
1320119:1320132	attR	AATAAAATCGCAAC	NA	NA	NA	NA
WP_000881075.1|1320175_1320973_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001303586.1|1321089_1321191_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001054340.1|1321187_1321643_+	DNA base-flipping protein YbcN	NA	I6PD71	Cronobacter_phage	66.9	4.1e-60
WP_000224907.1|1321642_1321813_+	hypothetical protein	NA	K7P7K0	Enterobacteria_phage	67.9	5.3e-13
WP_000774479.1|1321805_1322096_+	DUF1364 domain-containing protein	NA	K7PGZ6	Enterobacteria_phage	95.8	2.3e-48
WP_001099655.1|1322092_1322455_+	RusA family crossover junction endodeoxyribonuclease	NA	K7PM48	Enterobacteria_phage	97.4	7.3e-60
WP_000971071.1|1322451_1322592_+	YlcG family protein	NA	K7PHH3	Enterobacteria_phage	69.8	2.5e-08
WP_001204780.1|1322677_1323061_+	antitermination protein QuuD	NA	A0A088CD47	Shigella_phage	84.2	4.0e-56
WP_000839596.1|1325698_1325914_+|lysis	phage lysis protein EssD	lysis	A5LH82	Enterobacteria_phage	100.0	9.0e-34
WP_001135280.1|1325913_1326411_+	lysozyme RrrD	NA	M1FJA0	Enterobacteria_phage	97.6	1.1e-90
WP_001301134.1|1326407_1326869_+	prophage endopeptidase RzpD	NA	A0A0K2FJD0	Enterobacteria_phage	98.0	2.7e-75
WP_000738423.1|1326900_1327194_-	increased serum survival lipoprotein Iss	NA	K7PL54	Enterobacteria_phage	91.8	2.0e-44
WP_001415975.1|1327554_1327749_-	YlcI/YnfO family protein	NA	A0A0K2FIR8	Escherichia_phage	96.9	4.3e-27
>prophage 2
NZ_CP014768	Shigella sp. PAMC 28760 chromosome, complete genome	4558287	1528862	1568187	4558287	head,holin,terminase,tail,protease,portal,capsid	Enterobacteria_phage(90.38%)	52	NA	NA
WP_000805902.1|1528862_1529945_+	DNA-binding transcriptional repressor LacI	NA	C6ZCU4	Enterobacteria_phage	100.0	7.5e-193
WP_001092355.1|1530547_1533199_+	hypothetical protein	NA	C1KTT1	Enterobacteria_phage	100.0	0.0e+00
WP_002414258.1|1534107_1534326_-	excisionase	NA	C6ZCU6	Enterobacteria_phage	100.0	1.3e-35
WP_000545733.1|1534365_1534533_-	hypothetical protein	NA	A0A0K2FJ46	Enterobacteria_phage	100.0	1.3e-27
WP_000026224.1|1534621_1534903_-	hypothetical protein	NA	A0A0K2FIU9	Enterobacteria_phage	100.0	2.8e-51
WP_001289873.1|1535094_1535643_-	ead/Ea22-like family protein	NA	A0A0K2FJF6	Enterobacteria_phage	100.0	2.2e-100
WP_000763367.1|1535639_1535861_-	TraR/DksA family transcriptional regulator	NA	A0A0K2FI84	Escherichia_phage	100.0	2.9e-35
WP_000548551.1|1536252_1536444_-	DUF1382 family protein	NA	A0A0K2FJ42	Enterobacteria_phage	100.0	2.8e-26
WP_000149542.1|1536416_1536599_-	DUF1317 domain-containing protein	NA	A0A1U8QQC1	Enterobacteria_phage	100.0	1.6e-28
WP_000186891.1|1536595_1537276_-	YqaJ viral recombinase family protein	NA	C6ZCV3	Enterobacteria_phage	100.0	3.5e-132
WP_000100844.1|1537272_1538058_-	phage recombination protein Bet	NA	A0A0K2FJF1	Enterobacteria_phage	100.0	1.4e-148
WP_000995451.1|1538063_1538360_-	host-nuclease inhibitor protein Gam	NA	C6ZCV5	Enterobacteria_phage	100.0	2.1e-49
WP_000372937.1|1538434_1538578_-	host cell division inhibitory peptide Kil	NA	A0A0N7C2U2	Escherichia_phage	100.0	1.2e-18
WP_001198861.1|1538546_1538711_-|protease	protease FtsH-inhibitory lysogeny factor CIII	protease	Q776Q5	Enterobacteria_phage	100.0	1.1e-26
WP_000065374.1|1538783_1539152_-	DUF2528 family protein	NA	M1FPD2	Enterobacteria_phage	100.0	2.0e-65
WP_000213975.1|1539334_1539535_-	Restriction inhibitor protein ral	NA	A0A0K2FJE6	Enterobacteria_phage	100.0	1.4e-33
WP_000256575.1|1539613_1539913_-	hypothetical protein	NA	C6ZCW1	Enterobacteria_phage	100.0	3.8e-46
WP_001095982.1|1540227_1540878_-	LexA family transcriptional regulator	NA	K7PM82	Enterobacteria_phage	100.0	4.9e-123
WP_000276885.1|1540958_1541144_+	Cro/Cl family transcriptional regulator	NA	K7PHK4	Enterobacteria_phage	100.0	1.2e-26
WP_000035954.1|1541259_1541559_+	hypothetical protein	NA	C6ZCW4	Enterobacteria_phage	100.0	2.1e-49
WP_000185505.1|1541591_1542491_+	replication protein	NA	A0A0K2FJ31	Enterobacteria_phage	100.0	3.8e-174
WP_000788910.1|1542487_1543189_+	hypothetical protein	NA	A0A0K2FIT1	Enterobacteria_phage	100.0	7.6e-130
WP_000145932.1|1543185_1543989_+	serine/threonine protein phosphatase	NA	C6ZCW7	Enterobacteria_phage	100.0	1.6e-155
WP_001235469.1|1543985_1544609_+	antitermination protein	NA	C6ZCW8	Enterobacteria_phage	100.0	1.8e-114
WP_000783735.1|1545285_1545609_+|holin	phage holin, lambda family	holin	A0A0K2FJ23	Enterobacteria_phage	100.0	1.3e-52
WP_000229403.1|1545592_1546069_+	glycoside hydrolase family protein	NA	A0A0K2FIS2	Enterobacteria_phage	100.0	4.4e-89
WP_000092275.1|1546065_1546527_+	prophage endopeptidase RzpD	NA	A0A0K2FJD0	Enterobacteria_phage	100.0	1.9e-76
WP_000738491.1|1546558_1546852_-	serum resistance lipoprotein Bor	NA	C6ZCX3	Enterobacteria_phage	100.0	4.0e-48
WP_012775990.1|1547141_1547552_-	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	100.0	2.5e-72
WP_001031427.1|1547837_1548044_+	hypothetical protein	NA	A0A0K2FJ18	Enterobacteria_phage	100.0	5.8e-30
WP_001421937.1|1548208_1548403_-	YlcI/YnfO family protein	NA	A0A0K2FIR8	Escherichia_phage	100.0	8.7e-28
WP_000453580.1|1548791_1549337_+	DNA-packaging protein	NA	A0A0K2FIG2	Enterobacteria_phage	100.0	2.8e-95
WP_001027292.1|1549311_1551237_+|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	100.0	0.0e+00
WP_000198149.1|1551233_1551440_+	gpW family protein	NA	A0A2R9YJL2	Escherichia_phage	100.0	5.8e-30
WP_001359455.1|1551436_1553038_+|portal	phage portal protein	portal	A0A0K2FJC0	Enterobacteria_phage	100.0	5.9e-312
WP_000123343.1|1553018_1554338_+	S49 family peptidase	NA	A0A0K2FI53	Enterobacteria_phage	100.0	7.9e-237
WP_001297109.1|1554347_1554680_+|head	head decoration protein	head	C6ZCY1	Enterobacteria_phage	100.0	2.2e-55
WP_000063280.1|1554735_1555761_+|capsid	major capsid protein	capsid	C6ZCY2	Enterobacteria_phage	100.0	7.1e-193
WP_000158919.1|1555802_1556201_+	DNA-packaging protein FI	NA	A0A0K2FIR1	Enterobacteria_phage	100.0	3.1e-64
WP_000752979.1|1556212_1556566_+|head,tail	head-tail joining protein	head,tail	A0A0K2FJB7	Enterobacteria_phage	100.0	2.0e-62
WP_000975070.1|1556577_1557156_+|tail	phage tail protein	tail	A0A2R9YJK4	Escherichia_phage	100.0	2.7e-80
WP_000683105.1|1557152_1557548_+|tail	tail protein	tail	A0A0K2FIF4	Enterobacteria_phage	100.0	1.0e-70
WP_001349920.1|1557555_1558296_+|tail	phage tail protein	tail	A0A0K2FJ05	Enterobacteria_phage	100.0	7.8e-133
WP_000479153.1|1558311_1558734_+|tail	phage minor tail protein G	tail	A0A0K2FIQ8	Enterobacteria_phage	100.0	6.7e-73
WP_000459457.1|1558715_1559150_+|tail	phage tail assembly protein T	tail	A0A0K2FJB3	Enterobacteria_phage	100.0	6.9e-65
WP_000840207.1|1559142_1561704_+|tail	phage tail tape measure protein	tail	A0A0K2FI43	Enterobacteria_phage	100.0	0.0e+00
WP_000847379.1|1561700_1562030_+|tail	phage tail protein	tail	A0A0K2FIE9	Enterobacteria_phage	100.0	9.6e-59
WP_001152639.1|1562029_1562728_+|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	100.0	2.3e-134
WP_000194780.1|1562733_1563477_+|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	96.8	2.5e-147
WP_000090889.1|1563413_1564046_+|tail	tail assembly protein	tail	C6ZCZ4	Enterobacteria_phage	100.0	5.9e-97
WP_000515495.1|1564106_1567505_+	host specificity protein J	NA	C6ZCZ5	Enterobacteria_phage	100.0	0.0e+00
WP_001246632.1|1567566_1568187_+	outer membrane beta-barrel protein Lom	NA	A0A1U8QHD6	Enterobacteria_phage	100.0	8.3e-112
>prophage 3
NZ_CP014768	Shigella sp. PAMC 28760 chromosome, complete genome	4558287	1652625	1675584	4558287	plate,integrase,terminase,lysis,tail,portal,capsid	Salmonella_phage(63.64%)	29	1648891:1648905	1656258:1656272
1648891:1648905	attL	GCTGTCGCTGATGGT	NA	NA	NA	NA
WP_000290930.1|1652625_1653642_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A218M4I3	Erwinia_phage	56.7	3.2e-105
WP_001321204.1|1653828_1654020_-	hypothetical protein	NA	A0A0R6PIH8	Moraxella_phage	68.2	4.0e-09
WP_001047321.1|1654035_1654605_-	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	43.4	3.8e-39
WP_001247707.1|1654730_1654952_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000460887.1|1654984_1656430_+	phage regulatory CII family protein	NA	E5G6L9	Salmonella_phage	97.0	4.5e-209
1656258:1656272	attR	ACCATCAGCGACAGC	NA	NA	NA	NA
WP_001154431.1|1656582_1656771_+	hypothetical protein	NA	E5G6M0	Salmonella_phage	96.8	1.6e-26
WP_001217575.1|1656781_1657015_+	DinI family protein	NA	E5G6M1	Salmonella_phage	100.0	4.7e-36
WP_001059831.1|1657207_1657543_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001034589.1|1658015_1658939_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001320043.1|1659101_1660064_+	RNA-directed DNA polymerase	NA	NA	NA	NA	NA
WP_000520360.1|1660081_1661107_-|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	86.7	7.6e-171
WP_001098413.1|1661106_1662873_-|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	99.1	0.0e+00
WP_000216259.1|1663015_1663768_+|capsid	GPO family capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	94.7	3.1e-113
WP_000196203.1|1663904_1664333_+|lysis	LysB family phage lysis regulatory protein	lysis	E5G6N2	Salmonella_phage	88.7	8.1e-58
WP_001039932.1|1664428_1664860_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	93.0	3.8e-71
WP_000829156.1|1664852_1665299_+	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	83.7	7.6e-59
WP_000115390.1|1665240_1666047_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000993743.1|1666150_1666729_+|plate	phage baseplate assembly protein V	plate	A0A1S6KZX7	Salmonella_phage	85.9	3.6e-93
WP_000177591.1|1666725_1667085_+	GPW/gp25 family protein	NA	A0A1S6KZZ4	Salmonella_phage	85.7	8.0e-51
WP_000268294.1|1667071_1667980_+|plate	baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	91.1	4.1e-144
WP_001086815.1|1667972_1668578_+|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	93.0	2.3e-111
WP_000104800.1|1668574_1670197_+|tail	phage tail protein	tail	M1TAS6	Escherichia_phage	78.5	6.2e-151
WP_000280166.1|1670198_1670636_+|tail	tail assembly chaperone	tail	A0A0F7LDZ0	Escherichia_phage	75.0	1.7e-55
WP_000368077.1|1670607_1671210_-|tail	tail fiber assembly protein	tail	M1SV83	Escherichia_phage	89.5	2.3e-98
WP_012767713.1|1671209_1671752_-|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	62.5	1.9e-56
WP_000972391.1|1672510_1672729_+	ogr/Delta-like zinc finger family protein	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
WP_001024876.1|1672964_1674650_-	aspartate:alanine antiporter	NA	NA	NA	NA	NA
WP_000681108.1|1674919_1675297_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001195240.1|1675326_1675584_-	glutaredoxin 1	NA	A0A2I7SAE2	Vibrio_phage	61.9	8.6e-23
>prophage 4
NZ_CP014768	Shigella sp. PAMC 28760 chromosome, complete genome	4558287	2171857	2192579	4558287	tRNA,lysis	Escherichia_phage(34.78%)	29	NA	NA
WP_001301114.1|2171857_2173090_-	diguanylate cyclase DgcM	NA	A0A127AWB9	Bacillus_phage	35.0	3.1e-17
WP_000387388.1|2173344_2174328_+	zinc transporter ZntB	NA	NA	NA	NA	NA
WP_000123737.1|2174805_2176179_+	ATP-dependent RNA helicase DbpA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.1	6.6e-53
WP_001157407.1|2176307_2177243_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	98.8	5.9e-146
WP_000040858.1|2177294_2178530_-	DUF3596 domain-containing protein	NA	A0A0U2JGI6	Escherichia_phage	98.5	1.6e-239
WP_000079604.1|2178531_2178747_-	excisionase XisR	NA	A0A0U2RY08	Escherichia_phage	100.0	1.8e-37
WP_000276809.1|2178825_2179035_-	double-strand break reduction protein RcbA	NA	A0A0U2QL97	Escherichia_phage	98.4	6.1e-27
WP_001317028.1|2179027_2179222_-	type I toxin-antitoxin system endodeoxyribonuclease toxin RalR	NA	A0A0U2QQP4	Escherichia_phage	96.9	5.8e-32
WP_000166319.1|2179278_2180088_-	recombination protein RecT	NA	A0A1P8DTF2	Proteus_phage	71.5	8.8e-106
WP_000632297.1|2181281_2181557_-	protein RacC	NA	A0A0U2QW85	Escherichia_phage	96.7	1.4e-42
WP_001352098.1|2181631_2181802_-	conserved protein, Rac prophage	NA	A0A0U2SHB5	Escherichia_phage	71.4	3.6e-17
WP_000560223.1|2181801_2182023_-	killing protein KilR	NA	A0A0U2RTC4	Escherichia_phage	98.6	2.0e-36
WP_001239610.1|2182341_2182953_+	super-infection exclusion protein B	NA	NA	NA	NA	NA
WP_001169151.1|2182949_2183105_-	YdaF family protein	NA	M4QQ57	Salicola_phage	55.3	6.1e-08
WP_012775985.1|2183248_2183461_+|lysis	phage lysis protein EssD	lysis	A5LH82	Enterobacteria_phage	96.9	3.0e-29
WP_000193293.1|2183465_2183810_+	YdfR family protein	NA	K7PGU6	Enterobacteria_phage	94.0	1.4e-36
WP_000370546.1|2183775_2184048_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000992105.1|2184153_2184687_+	lysozyme	NA	K7PLY1	Enterobacteria_phage	96.0	4.8e-100
WP_000091919.1|2184683_2185148_+|lysis	lysis protein	lysis	A0A0K2FJD0	Enterobacteria_phage	92.8	1.7e-69
WP_001097897.1|2185285_2186743_+	potassium transporter TrkG	NA	NA	NA	NA	NA
WP_012775984.1|2186880_2187276_+	ParB N-terminal domain-containing protein	NA	A0A0R6PD10	Moraxella_phage	58.7	3.1e-19
WP_000654171.1|2187957_2188236_+	hypothetical protein	NA	A0A0E3JSQ1	Enterobacteria_phage	55.4	2.9e-24
WP_000355360.1|2188248_2188542_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000078178.1|2188769_2189360_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	38.8	1.6e-24
WP_000836768.1|2189676_2189910_-	cold shock protein YdfK	NA	A0A192Y6D5	Salmonella_phage	88.3	1.1e-32
WP_120795384.1|2189978_2190092_-	Rac prophage; protein YnaM	NA	A0A1C9IHU6	Salmonella_phage	80.6	8.4e-07
WP_001157925.1|2190431_2190605_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001300461.1|2190870_2191305_-	universal stress protein UspF	NA	A0A1W6JNV4	Morganella_phage	52.8	1.8e-28
WP_000837924.1|2191445_2192579_-	porin OmpN	NA	Q1MVN1	Enterobacteria_phage	58.8	8.3e-118
>prophage 5
NZ_CP014768	Shigella sp. PAMC 28760 chromosome, complete genome	4558287	2358876	2374499	4558287	transposase	Enterobacteria_phage(18.75%)	23	NA	NA
WP_000527826.1|2358876_2360337_-	mannitol dehydrogenase family protein	NA	G8DCZ3	Micromonas_pusilla_virus	29.3	2.8e-41
WP_000347482.1|2360425_2361709_-	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_120795384.1|2362312_2362426_+	Rac prophage; protein YnaM	NA	A0A1C9IHU6	Salmonella_phage	80.6	8.4e-07
WP_000836768.1|2362494_2362728_+	cold shock protein YdfK	NA	A0A192Y6D5	Salmonella_phage	88.3	1.1e-32
WP_000086527.1|2363043_2363634_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	38.8	1.6e-24
WP_000355603.1|2363861_2364155_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000235975.1|2364165_2364870_-	hypothetical protein	NA	A0A1X7QGH6	Escherichia_phage	62.3	5.4e-59
WP_001205170.1|2364879_2365161_-	hypothetical protein	NA	A0A1X7QHA1	Escherichia_phage	47.8	4.5e-17
WP_000879385.1|2365160_2366414_-	hypothetical protein	NA	A0A0E3M194	Enterobacteria_phage	54.3	3.7e-127
WP_000896277.1|2366733_2366895_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164979075.1|2366922_2367099_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085947598.1|2367122_2368284_+|transposase	IS3-like element IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	4.0e-51
WP_000780584.1|2368654_2369179_+	lipocalin family protein	NA	A0A1W6JNX6	Morganella_phage	52.9	1.0e-46
WP_001204787.1|2369334_2369712_-	antitermination protein	NA	Q777W5	Enterobacteria_phage	82.5	1.8e-53
WP_001265279.1|2369729_2370380_-	DUF968 domain-containing protein	NA	Q8SBE5	Shigella_phage	70.3	2.6e-68
WP_012775982.1|2370381_2370660_-	hypothetical protein	NA	I6PCV7	Cronobacter_phage	48.4	5.7e-12
WP_000981003.1|2370726_2370978_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000887491.1|2371194_2371407_-	type I toxin-antitoxin system Hok family toxin	NA	A0A0U2QV81	Escherichia_phage	97.1	1.7e-29
WP_000054497.1|2372011_2372977_-	hypothetical protein	NA	U5P0A0	Shigella_phage	60.2	5.0e-55
WP_000705360.1|2372957_2373479_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000921596.1|2373462_2373690_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_000381212.1|2373770_2374178_+	helix-turn-helix domain-containing protein	NA	I6PD69	Cronobacter_phage	51.9	7.2e-32
WP_000379591.1|2374346_2374499_+	DUF1391 family protein	NA	M4QQ57	Salicola_phage	53.2	6.6e-07
>prophage 6
NZ_CP014768	Shigella sp. PAMC 28760 chromosome, complete genome	4558287	2786198	2795055	4558287		Enterobacteria_phage(42.86%)	8	NA	NA
WP_000998544.1|2786198_2787311_-	dTDP-4-amino-4,6-dideoxy-D-glucose aminotransferase VioA	NA	A0A0P0YLZ6	Yellowstone_lake_phycodnavirus	25.7	1.3e-14
WP_001060532.1|2787320_2788745_-	O7 family O-antigen flippase	NA	NA	NA	NA	NA
WP_001100801.1|2788748_2789294_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.9	1.6e-47
WP_000857508.1|2789298_2790177_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.1	8.7e-107
WP_001023616.1|2790235_2791135_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	34.5	8.2e-28
WP_000699450.1|2791134_2792220_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	3.9e-101
WP_000183060.1|2792592_2793486_-	UTP--glucose-1-phosphate uridylyltransferase GalF	NA	A0A127AW70	Bacillus_phage	42.0	1.0e-46
WP_001115981.1|2793660_2795055_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	33.5	1.3e-19
>prophage 7
NZ_CP014768	Shigella sp. PAMC 28760 chromosome, complete genome	4558287	2882955	2892397	4558287		Enterobacteria_phage(85.71%)	10	NA	NA
WP_001300968.1|2882955_2884092_+	VWA domain-containing protein	NA	Q9EYF7	Enterobacteria_phage	97.4	3.2e-162
WP_001300967.1|2884088_2886089_+	SWIM zinc finger family protein	NA	Q9EYF6	Enterobacteria_phage	96.6	0.0e+00
WP_001296231.1|2886213_2886675_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	99.3	3.2e-76
WP_001295430.1|2886715_2887186_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	100.0	1.8e-82
WP_000598641.1|2887232_2887952_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_001483656.1|2887948_2889634_-	two-component regulatory system sensor histidine kinase BtsS	NA	Q9EYF3	Enterobacteria_phage	99.5	2.8e-303
WP_001240403.1|2889855_2890587_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	99.5	9.7e-112
WP_001216966.1|2890646_2890754_+	protein YohO	NA	NA	NA	NA	NA
WP_000783120.1|2890734_2891466_-	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA	NA
WP_000569344.1|2891470_2892397_-	glycine betaine ABC transporter ATP binding protein YehX	NA	F2Y1V5	Organic_Lake_phycodnavirus	26.8	5.7e-08
>prophage 8
NZ_CP014768	Shigella sp. PAMC 28760 chromosome, complete genome	4558287	3477186	3490369	4558287		Escherichia_phage(50.0%)	12	NA	NA
WP_001272928.1|3477186_3479748_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.6	3.0e-30
WP_001141307.1|3479853_3480510_+	protein-serine/threonine phosphatase	NA	A0A077SLQ6	Escherichia_phage	46.6	8.6e-51
WP_001295181.1|3480560_3481328_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	56.7	2.5e-70
WP_000847971.1|3481523_3482432_+	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	76.5	5.1e-118
WP_000590371.1|3482428_3483691_+	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	61.4	4.9e-135
WP_001278994.1|3483687_3484326_+	aldolase	NA	A0A077SK32	Escherichia_phage	75.0	1.4e-82
WP_001136925.1|3484330_3485107_+	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_000104459.1|3485195_3486560_+	GntP family transporter	NA	NA	NA	NA	NA
WP_000081550.1|3486653_3487646_-	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	37.6	6.1e-32
WP_001272590.1|3487708_3488848_-	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	35.6	1.7e-06
WP_000254708.1|3488987_3489614_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	49.7	5.7e-36
WP_001295182.1|3489607_3490369_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	48.0	3.4e-59
