assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001598635.1_ASM159863v1	NZ_CP014949	Enterococcus faecalis strain LD33, complete genome	1	898175-898804	1,1,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no		DinG,cas3,DEDDh,csa3,WYL,cas14j	Orphan	GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC,GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC,TGTTTTGGCACCATTCTAAACAACATGACTCTAAAACCAATTGAT,GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	36,36,45,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B:II-A,II-B	9,9,7,7	9	Orphan	DinG,cas3,DEDDh,csa3,WYL,cas14j	NA|44aa|up_8|NZ_CP014949.1_888303_888435_-,NA|33aa|up_0|NZ_CP014949.1_897927_898026_-,NA|62aa|down_6|NZ_CP014949.1_904996_905182_-	NA|808aa|up_9|NZ_CP014949.1_885774_888198_-	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|44aa|up_8|NZ_CP014949.1_888303_888435_-	NA	NA|404aa|up_7|NZ_CP014949.1_888511_889723_-	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|302aa|up_6|NZ_CP014949.1_889751_890657_-	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated	NA|327aa|up_5|NZ_CP014949.1_890778_891759_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|589aa|up_4|NZ_CP014949.1_891838_893605_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|578aa|up_3|NZ_CP014949.1_893601_895335_-	TIGR02857, transport_ATP-binding_protein, thiol reductant ABC exporter, CydD subunit	NA|338aa|up_2|NZ_CP014949.1_895339_896353_-	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II	NA|473aa|up_1|NZ_CP014949.1_896349_897768_-	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|33aa|up_0|NZ_CP014949.1_897927_898026_-	NA	NA|288aa|down_0|NZ_CP014949.1_898962_899826_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|694aa|down_1|NZ_CP014949.1_899910_901992_-	PRK07726, PRK07726, DNA topoisomerase 3	NA|122aa|down_2|NZ_CP014949.1_902122_902488_-	pfam06279, DUF1033, Protein of unknown function (DUF1033)	NA|190aa|down_3|NZ_CP014949.1_902585_903155_-	pfam13305, WHG, WHG domain	NA|172aa|down_4|NZ_CP014949.1_903287_903803_+	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea	NA|411aa|down_5|NZ_CP014949.1_903819_905052_+	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|62aa|down_6|NZ_CP014949.1_904996_905182_-	NA	NA|375aa|down_7|NZ_CP014949.1_905238_906363_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|115aa|down_8|NZ_CP014949.1_906588_906933_-	pfam08866, DUF1831, Putative amino acid metabolism	NA|382aa|down_9|NZ_CP014949.1_907000_908146_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
GCF_001598635.1_ASM159863v1	NZ_CP014949	Enterococcus faecalis strain LD33, complete genome	2	1097606-1097718	2	CRISPRCasFinder	no	csa3	DinG,cas3,DEDDh,csa3,WYL,cas14j	Type I-A	CTCCATGTTTTTGGCTAAACAGTTTGTTTTA	31	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,WYL,cas14j	NA,NA|28aa|down_0|NZ_CP014949.1_1097848_1097932_-	NA|241aa|up_9|NZ_CP014949.1_1088557_1089280_-	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)	NA|294aa|up_8|NZ_CP014949.1_1089540_1090422_-	PRK09377, tsf, elongation factor Ts; Provisional	NA|262aa|up_7|NZ_CP014949.1_1090527_1091313_-	PRK05299, rpsB, 30S ribosomal protein S2; Provisional	NA|146aa|up_6|NZ_CP014949.1_1091496_1091934_-	PRK10562, PRK10562, putative acetyltransferase; Provisional	NA|259aa|up_5|NZ_CP014949.1_1091953_1092730_-	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|92aa|up_4|NZ_CP014949.1_1092836_1093112_+	COG1254, AcyP, Acylphosphatases [Energy production and conversion]	NA|311aa|up_3|NZ_CP014949.1_1093278_1094211_+	PRK02463, PRK02463, OxaA-like protein precursor; Provisional	NA|64aa|up_2|NZ_CP014949.1_1094244_1094436_-	PRK07758, PRK07758, hypothetical protein; Provisional	NA|695aa|up_1|NZ_CP014949.1_1094475_1096560_-	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated	NA|303aa|up_0|NZ_CP014949.1_1096561_1097470_-	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated	NA|28aa|down_0|NZ_CP014949.1_1097848_1097932_-	NA	NA|265aa|down_1|NZ_CP014949.1_1098200_1098995_-	TIGR00613, DNA_repair_protein_RecO, DNA repair protein RecO	NA|301aa|down_2|NZ_CP014949.1_1099077_1099980_-	PRK00089, era, GTPase Era; Reviewed	NA|136aa|down_3|NZ_CP014949.1_1099993_1100401_-	cd14265, UDPK_IM_like, Integral membrane undecaprenol kinase and similar enzymes	NA|160aa|down_4|NZ_CP014949.1_1100378_1100858_-	PRK00016, PRK00016, metal-binding heat shock protein; Provisional	NA|733aa|down_5|NZ_CP014949.1_1100857_1103056_-	COG1480, COG1480, Predicted membrane-associated HD superfamily hydrolase [General function prediction only]	NA|325aa|down_6|NZ_CP014949.1_1103084_1104059_-	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]	NA|150aa|down_7|NZ_CP014949.1_1104241_1104691_-	pfam09424, YqeY, Yqey-like protein	NA|59aa|down_8|NZ_CP014949.1_1104716_1104893_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|145aa|down_9|NZ_CP014949.1_1105058_1105493_-	cd07153, Fur_like, Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators
GCF_001598635.1_ASM159863v1	NZ_CP014949	Enterococcus faecalis strain LD33, complete genome	3	1731172-1731245	3	CRISPRCasFinder	no		DinG,cas3,DEDDh,csa3,WYL,cas14j	Orphan	ATAGTTGGCGAGCAACAGAAAAAC	24	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,csa3,WYL,cas14j	NA|71aa|up_9|NZ_CP014949.1_1719951_1720164_-,NA	NA|71aa|up_9|NZ_CP014949.1_1719951_1720164_-	NA	NA|289aa|up_8|NZ_CP014949.1_1720288_1721155_-	COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown]	NA|435aa|up_7|NZ_CP014949.1_1721322_1722627_-	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|423aa|up_6|NZ_CP014949.1_1722619_1723888_-	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|151aa|up_5|NZ_CP014949.1_1724096_1724549_+	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL	NA|239aa|up_4|NZ_CP014949.1_1724589_1725306_-	pfam13731, WxL, WxL domain surface cell wall-binding	NA|237aa|up_3|NZ_CP014949.1_1725401_1726112_-	pfam13731, WxL, WxL domain surface cell wall-binding	NA|238aa|up_2|NZ_CP014949.1_1726507_1727221_-	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B	NA|915aa|up_1|NZ_CP014949.1_1727482_1730227_+	COG1554, ATH1, Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism]	NA|217aa|up_0|NZ_CP014949.1_1730241_1730892_+	TIGR01990, bPGM, beta-phosphoglucomutase	NA|148aa|down_0|NZ_CP014949.1_1731461_1731905_+	pfam18813, PBECR4, phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4	NA|51aa|down_1|NZ_CP014949.1_1732144_1732297_-	pfam16935, Hol_Tox, Putative Holin-like Toxin (Hol-Tox)	NA|324aa|down_2|NZ_CP014949.1_1732519_1733491_-	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|146aa|down_3|NZ_CP014949.1_1733665_1734103_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|185aa|down_4|NZ_CP014949.1_1734235_1734790_-	cd00555, Maf, Nucleotide binding protein Maf	NA|711aa|down_5|NZ_CP014949.1_1734814_1736947_-	COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]	NA|859aa|down_6|NZ_CP014949.1_1736978_1739555_-	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional	NA|124aa|down_7|NZ_CP014949.1_1739555_1739927_-	COG4550, COG4550, Predicted membrane protein [Function unknown]	NA|266aa|down_8|NZ_CP014949.1_1740015_1740813_-	pfam13277, YmdB, YmdB-like protein	NA|519aa|down_9|NZ_CP014949.1_1740972_1742529_-	PRK12704, PRK12704, phosphodiesterase; Provisional
