assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001602115.1_ASM160211v1	NZ_CP014352	Acidipropionibacterium acidipropionici strain ATCC 55737 chromosome, complete genome	1	323317-323405	1	CRISPRCasFinder	no		DEDDh,WYL,cas3,DinG,csa3,csb1gr7,csb2gr5,csb3,cas1,cas2	Orphan	ACCCCCTGCACCCCCGGGCGGGGACT	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,DinG,csa3,csb1gr7,csb2gr5,csb3,cas1,cas2	NA|190aa|up_9|NZ_CP014352.1_310590_311160_+,NA|195aa|down_5|NZ_CP014352.1_329295_329880_-	NA|190aa|up_9|NZ_CP014352.1_310590_311160_+	NA	NA|961aa|up_8|NZ_CP014352.1_311156_314039_+	pfam03699, UPF0182, Uncharacterized protein family (UPF0182)	NA|197aa|up_7|NZ_CP014352.1_314035_314626_+	cd00293, USP_Like, Usp: Universal stress protein family	NA|805aa|up_6|NZ_CP014352.1_314644_317059_+	PRK15098, PRK15098, beta-glucosidase BglX	NA|250aa|up_5|NZ_CP014352.1_317500_318250_+	pfam13398, Peptidase_M50B, Peptidase M50B-like	NA|500aa|up_4|NZ_CP014352.1_318405_319905_+	cd08494, PBP2_NikA_DppA_OppA_like_6, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|324aa|up_3|NZ_CP014352.1_319901_320873_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|271aa|up_2|NZ_CP014352.1_320869_321682_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|272aa|up_1|NZ_CP014352.1_321678_322494_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|271aa|up_0|NZ_CP014352.1_322490_323303_+	cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters	NA|397aa|down_0|NZ_CP014352.1_323491_324682_+	PRK11790, PRK11790, phosphoglycerate dehydrogenase	NA|262aa|down_1|NZ_CP014352.1_324714_325500_-	TIGR02067, his_9_HisN, histidinol-phosphatase, inositol monophosphatase family	NA|483aa|down_2|NZ_CP014352.1_325530_326979_+	COG2939, COG2939, Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]	NA|332aa|down_3|NZ_CP014352.1_326997_327993_-	cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases	NA|438aa|down_4|NZ_CP014352.1_327989_329303_-	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional	NA|195aa|down_5|NZ_CP014352.1_329295_329880_-	NA	NA|222aa|down_6|NZ_CP014352.1_330084_330750_+	TIGR02947, putative_RNA_polymerase_sigma_factor, RNA polymerase sigma-70 factor, TIGR02947 family	NA|86aa|down_7|NZ_CP014352.1_330746_331004_+	TIGR02949, putative_anti-sigma_factor, anti-sigma factor, TIGR02949 family	NA|491aa|down_8|NZ_CP014352.1_331401_332874_+	pfam12282, H_kinase_N, Signal transduction histidine kinase	NA|84aa|down_9|NZ_CP014352.1_332904_333156_-	pfam02467, Whib, Transcription factor WhiB
GCF_001602115.1_ASM160211v1	NZ_CP014352	Acidipropionibacterium acidipropionici strain ATCC 55737 chromosome, complete genome	2	817533-817640	2	CRISPRCasFinder	no		DEDDh,WYL,cas3,DinG,csa3,csb1gr7,csb2gr5,csb3,cas1,cas2	Orphan	GGGGGGCAACCCCCCTGCACCCCCTGGCG	29	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,DinG,csa3,csb1gr7,csb2gr5,csb3,cas1,cas2	NA|54aa|up_9|NZ_CP014352.1_805980_806142_+,NA|197aa|up_8|NZ_CP014352.1_806191_806782_+,NA|101aa|up_7|NZ_CP014352.1_812219_812522_+,NA|174aa|up_5|NZ_CP014352.1_813336_813858_+,NA	NA|54aa|up_9|NZ_CP014352.1_805980_806142_+	NA	NA|197aa|up_8|NZ_CP014352.1_806191_806782_+	NA	NA|101aa|up_7|NZ_CP014352.1_812219_812522_+	NA	NA|161aa|up_6|NZ_CP014352.1_812817_813300_-	pfam07179, SseB, SseB protein N-terminal domain	NA|174aa|up_5|NZ_CP014352.1_813336_813858_+	NA	NA|287aa|up_4|NZ_CP014352.1_813906_814767_-	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed	NA|89aa|up_3|NZ_CP014352.1_814778_815045_-	cd11547, NTP-PPase_HisE, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3	NA|225aa|up_2|NZ_CP014352.1_815102_815777_-	pfam04973, NMN_transporter, Nicotinamide mononucleotide transporter	NA|194aa|up_1|NZ_CP014352.1_815906_816488_-	pfam11290, DUF3090, Protein of unknown function (DUF3090)	NA|320aa|up_0|NZ_CP014352.1_816569_817529_+	COG0667, Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]	NA|451aa|down_0|NZ_CP014352.1_818940_820293_-	PRK07906, PRK07906, hypothetical protein; Provisional	NA|338aa|down_1|NZ_CP014352.1_820592_821606_-	cd01574, PBP1_LacI, ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators	NA|504aa|down_2|NZ_CP014352.1_821731_823243_-	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|239aa|down_3|NZ_CP014352.1_823302_824019_-	PRK06557, PRK06557, L-ribulose-5-phosphate 4-epimerase; Validated	NA|467aa|down_4|NZ_CP014352.1_824360_825761_+	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily	NA|338aa|down_5|NZ_CP014352.1_825867_826881_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|273aa|down_6|NZ_CP014352.1_829297_830116_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|633aa|down_7|NZ_CP014352.1_830124_832023_+	COG3533, COG3533, Uncharacterized protein conserved in bacteria [Function unknown]	NA|353aa|down_8|NZ_CP014352.1_832063_833122_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|300aa|down_9|NZ_CP014352.1_833133_834033_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]
GCF_001602115.1_ASM160211v1	NZ_CP014352	Acidipropionibacterium acidipropionici strain ATCC 55737 chromosome, complete genome	3	1693660-1699113	1,3,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	csb1gr7,csb2gr5,cas3,csb3,cas1,cas2	DEDDh,WYL,cas3,DinG,csa3,csb1gr7,csb2gr5,csb3,cas1,cas2	Unclear	ATCGCTCCCCTTTCCAGGGGAGCCCTTCGTTGAGGC,ATCGCTCCCCTTTCCAGGGGAGCCCTTCGTTGAGGC,ATCGCTCCCCTTTCCAGGGGAGCCCTTCGTTGAGGC,ATCGCTCCCCTTTCCAGGGGAGCCCTTCGTTGAGGC	36,36,36,36	1	1	1695304-1695338	NZ_CP014352.1_3193239-3193273	NA:NA:NA:NA	73,75,75,73	75	Unclear	DEDDh,WYL,cas3,DinG,csa3,csb1gr7,csb2gr5,csb3,cas1,cas2	NA|356aa|up_7|NZ_CP014352.1_1680173_1681241_-,NA|217aa|up_6|NZ_CP014352.1_1681381_1682032_-,NA	NA|826aa|up_9|NZ_CP014352.1_1676996_1679474_+	COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]	NA|230aa|up_8|NZ_CP014352.1_1679470_1680160_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|356aa|up_7|NZ_CP014352.1_1680173_1681241_-	NA	NA|217aa|up_6|NZ_CP014352.1_1681381_1682032_-	NA	csb1gr7|403aa|up_5|NZ_CP014352.1_1685174_1686383_+	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053)	csb2gr5|528aa|up_4|NZ_CP014352.1_1686385_1687969_+	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system	cas3|876aa|up_3|NZ_CP014352.1_1687965_1690593_+	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc	csb3|333aa|up_2|NZ_CP014352.1_1690589_1691588_+	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3	cas1|535aa|up_1|NZ_CP014352.1_1691574_1693179_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|100aa|up_0|NZ_CP014352.1_1693175_1693475_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|372aa|down_0|NZ_CP014352.1_1699127_1700243_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|436aa|down_1|NZ_CP014352.1_1701768_1703076_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|193aa|down_2|NZ_CP014352.1_1703203_1703782_-	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|384aa|down_3|NZ_CP014352.1_1704062_1705214_+	cd06267, PBP1_LacI_sugar_binding-like, ligand binding domain of the LacI transcriptional regulator family belonging to the type 1 periplasmic-binding fold protein superfamily	NA|213aa|down_4|NZ_CP014352.1_1705539_1706178_+	TIGR00393, Probable_arabinose_5-phosphate_isomerase, KpsF/GutQ family protein	NA|326aa|down_5|NZ_CP014352.1_1706170_1707148_+	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP	NA|361aa|down_6|NZ_CP014352.1_1707144_1708227_+	pfam11175, DUF2961, Protein of unknown function (DUF2961)	NA|395aa|down_7|NZ_CP014352.1_1708234_1709419_+	pfam13810, DUF4185, Domain of unknown function (DUF4185)	NA|456aa|down_8|NZ_CP014352.1_1709571_1710939_+	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|314aa|down_9|NZ_CP014352.1_1710944_1711886_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]
GCF_001602115.1_ASM160211v1	NZ_CP014352	Acidipropionibacterium acidipropionici strain ATCC 55737 chromosome, complete genome	4	1700309-1701722	3,4,2	PILER-CR,CRISPRCasFinder,CRT	no	csb1gr7,csb2gr5,cas3,csb3,cas1,cas2	DEDDh,WYL,cas3,DinG,csa3,csb1gr7,csb2gr5,csb3,cas1,cas2	Unclear	ATCGCTCCCCTTTCCAGGGGAGCCCTTCGTTGAGGC,ATCGCTCCCCTTTCCAGGGGAGCCCTTCGTTGAGGC,ATCGCTCCCCTTTCCAGGGGAGCCCTTCGTTGAGGC	36,36,36	1	1	1700563-1700599	NZ_CP014352.1_3164098-3164134	NA:NA:NA	19,19,19	19	Unclear	DEDDh,WYL,cas3,DinG,csa3,csb1gr7,csb2gr5,csb3,cas1,cas2	NA|356aa|up_8|NZ_CP014352.1_1680173_1681241_-,NA|217aa|up_7|NZ_CP014352.1_1681381_1682032_-,NA	NA|230aa|up_9|NZ_CP014352.1_1679470_1680160_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|356aa|up_8|NZ_CP014352.1_1680173_1681241_-	NA	NA|217aa|up_7|NZ_CP014352.1_1681381_1682032_-	NA	csb1gr7|403aa|up_6|NZ_CP014352.1_1685174_1686383_+	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053)	csb2gr5|528aa|up_5|NZ_CP014352.1_1686385_1687969_+	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system	cas3|876aa|up_4|NZ_CP014352.1_1687965_1690593_+	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc	csb3|333aa|up_3|NZ_CP014352.1_1690589_1691588_+	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3	cas1|535aa|up_2|NZ_CP014352.1_1691574_1693179_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|100aa|up_1|NZ_CP014352.1_1693175_1693475_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|372aa|up_0|NZ_CP014352.1_1699127_1700243_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|436aa|down_0|NZ_CP014352.1_1701768_1703076_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|193aa|down_1|NZ_CP014352.1_1703203_1703782_-	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|384aa|down_2|NZ_CP014352.1_1704062_1705214_+	cd06267, PBP1_LacI_sugar_binding-like, ligand binding domain of the LacI transcriptional regulator family belonging to the type 1 periplasmic-binding fold protein superfamily	NA|213aa|down_3|NZ_CP014352.1_1705539_1706178_+	TIGR00393, Probable_arabinose_5-phosphate_isomerase, KpsF/GutQ family protein	NA|326aa|down_4|NZ_CP014352.1_1706170_1707148_+	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP	NA|361aa|down_5|NZ_CP014352.1_1707144_1708227_+	pfam11175, DUF2961, Protein of unknown function (DUF2961)	NA|395aa|down_6|NZ_CP014352.1_1708234_1709419_+	pfam13810, DUF4185, Domain of unknown function (DUF4185)	NA|456aa|down_7|NZ_CP014352.1_1709571_1710939_+	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|314aa|down_8|NZ_CP014352.1_1710944_1711886_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|283aa|down_9|NZ_CP014352.1_1711932_1712781_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]
GCF_001602115.1_ASM160211v1	NZ_CP014352	Acidipropionibacterium acidipropionici strain ATCC 55737 chromosome, complete genome	5	1772844-1772967	5	CRISPRCasFinder	no		DEDDh,WYL,cas3,DinG,csa3,csb1gr7,csb2gr5,csb3,cas1,cas2	Orphan	CCGACTCGCCGCCCGGGGGTGCAGGGGGTCGGCCCCCGCC	40	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,DinG,csa3,csb1gr7,csb2gr5,csb3,cas1,cas2	NA|68aa|up_3|NZ_CP014352.1_1771232_1771436_+,NA	NA|388aa|up_9|NZ_CP014352.1_1764402_1765566_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|214aa|up_8|NZ_CP014352.1_1765562_1766204_+	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|227aa|up_7|NZ_CP014352.1_1766200_1766881_+	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|340aa|up_6|NZ_CP014352.1_1766877_1767897_+	cd13606, PBP2_ProX_like, Bacterial substrate-binding protein ProX of ABC-type osmoregulated transporter and its related proteins; the type 2 periplasmic-binding protein fold	NA|508aa|up_5|NZ_CP014352.1_1768228_1769752_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|314aa|up_4|NZ_CP014352.1_1770034_1770976_+	pfam01844, HNH, HNH endonuclease	NA|68aa|up_3|NZ_CP014352.1_1771232_1771436_+	NA	NA|98aa|up_2|NZ_CP014352.1_1771436_1771730_-	PRK11689, PRK11689, aromatic amino acid efflux DMT transporter YddG	NA|75aa|up_1|NZ_CP014352.1_1771726_1771951_-	PRK11689, PRK11689, aromatic amino acid efflux DMT transporter YddG	NA|165aa|up_0|NZ_CP014352.1_1771896_1772391_-	PRK11689, PRK11689, aromatic amino acid efflux DMT transporter YddG	NA|440aa|down_0|NZ_CP014352.1_1772977_1774297_-	COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]	NA|148aa|down_1|NZ_CP014352.1_1774573_1775017_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|243aa|down_2|NZ_CP014352.1_1775070_1775799_-	TIGR03941, conserved_hypothetical_protein, putative tRNA adenosine deaminase-associated protein	NA|209aa|down_3|NZ_CP014352.1_1775978_1776605_+	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	NA|282aa|down_4|NZ_CP014352.1_1776601_1777447_+	COG3777, COG3777, Uncharacterized conserved protein [Function unknown]	NA|174aa|down_5|NZ_CP014352.1_1777563_1778085_-	cd04939, PA2301, PA2301 is an uncharacterized Pseudomonas aeruginosa protein with a YbaK-like domain of unknown function	NA|435aa|down_6|NZ_CP014352.1_1778187_1779492_+	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|641aa|down_7|NZ_CP014352.1_1779600_1781523_+	cd11325, AmyAc_GTHase, Alpha amylase catalytic domain found in Glycosyltrehalose trehalohydrolase (also called Maltooligosyl trehalose Trehalohydrolase)	NA|337aa|down_8|NZ_CP014352.1_1781561_1782572_-	cd05288, PGDH, Prostaglandin dehydrogenases	NA|689aa|down_9|NZ_CP014352.1_1782723_1784790_+	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
GCF_001602115.1_ASM160211v1	NZ_CP014352	Acidipropionibacterium acidipropionici strain ATCC 55737 chromosome, complete genome	6	1797491-1797609	6	CRISPRCasFinder	no		DEDDh,WYL,cas3,DinG,csa3,csb1gr7,csb2gr5,csb3,cas1,cas2	Orphan	CCTCCCCGAGCGGGGCGGGGTCCACGACTCG	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,DinG,csa3,csb1gr7,csb2gr5,csb3,cas1,cas2	NA|292aa|up_8|NZ_CP014352.1_1785550_1786426_-,NA|88aa|up_2|NZ_CP014352.1_1795067_1795331_+,NA	NA|246aa|up_9|NZ_CP014352.1_1784782_1785520_-	cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins	NA|292aa|up_8|NZ_CP014352.1_1785550_1786426_-	NA	NA|232aa|up_7|NZ_CP014352.1_1786539_1787235_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|494aa|up_6|NZ_CP014352.1_1789179_1790661_+	COG1316, LytR, Transcriptional regulator [Transcription]	NA|351aa|up_5|NZ_CP014352.1_1790736_1791789_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|409aa|up_4|NZ_CP014352.1_1791785_1793012_-	COG0153, GalK, Galactokinase [Carbohydrate transport and metabolism]	NA|569aa|up_3|NZ_CP014352.1_1793344_1795051_+	cd11478, SLC5sbd_u2, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain	NA|88aa|up_2|NZ_CP014352.1_1795067_1795331_+	NA	NA|168aa|up_1|NZ_CP014352.1_1795501_1796005_-	PRK05415, PRK05415, hypothetical protein; Provisional	NA|334aa|up_0|NZ_CP014352.1_1796443_1797445_+	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase	NA|473aa|down_0|NZ_CP014352.1_1797793_1799212_+	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|417aa|down_1|NZ_CP014352.1_1799538_1800789_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|633aa|down_2|NZ_CP014352.1_1800836_1802735_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|168aa|down_3|NZ_CP014352.1_1803132_1803636_+	pfam08281, Sigma70_r4_2, Sigma-70, region 4	NA|267aa|down_4|NZ_CP014352.1_1803801_1804602_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|377aa|down_5|NZ_CP014352.1_1804656_1805787_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|439aa|down_6|NZ_CP014352.1_1805958_1807275_+	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|331aa|down_7|NZ_CP014352.1_1807391_1808384_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|280aa|down_8|NZ_CP014352.1_1808376_1809216_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|664aa|down_9|NZ_CP014352.1_1809291_1811283_+	COG3934, COG3934, Endo-beta-mannanase [Carbohydrate transport and metabolism]
GCF_001602115.1_ASM160211v1	NZ_CP014352	Acidipropionibacterium acidipropionici strain ATCC 55737 chromosome, complete genome	7	2677563-2677693	7	CRISPRCasFinder	no		DEDDh,WYL,cas3,DinG,csa3,csb1gr7,csb2gr5,csb3,cas1,cas2	Orphan	CGGTCGGGTCCGTGGGAGGTGGGTCGGCACCCGTGGCCACGCGT	44	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,DinG,csa3,csb1gr7,csb2gr5,csb3,cas1,cas2	NA|378aa|up_7|NZ_CP014352.1_2668568_2669702_+,NA|155aa|up_6|NZ_CP014352.1_2669803_2670268_+,NA|82aa|up_5|NZ_CP014352.1_2670252_2670498_-,NA|179aa|down_0|NZ_CP014352.1_2677812_2678349_+,NA|107aa|down_3|NZ_CP014352.1_2679651_2679972_-	NA|746aa|up_9|NZ_CP014352.1_2664474_2666712_-	NF033189, internalin_A, class 1 internalin InlA	NA|475aa|up_8|NZ_CP014352.1_2666763_2668188_-	pfam06662, C5-epim_C, D-glucuronyl C5-epimerase C-terminus	NA|378aa|up_7|NZ_CP014352.1_2668568_2669702_+	NA	NA|155aa|up_6|NZ_CP014352.1_2669803_2670268_+	NA	NA|82aa|up_5|NZ_CP014352.1_2670252_2670498_-	NA	NA|277aa|up_4|NZ_CP014352.1_2670628_2671459_+	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|450aa|up_3|NZ_CP014352.1_2671599_2672949_-	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|205aa|up_2|NZ_CP014352.1_2673079_2673694_+	cd03674, Nudix_Hydrolase_1, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|849aa|up_1|NZ_CP014352.1_2673690_2676237_+	TIGR01970, ATP-dependent_RNA_helicase_HrpB, ATP-dependent helicase HrpB	NA|392aa|up_0|NZ_CP014352.1_2676340_2677516_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|179aa|down_0|NZ_CP014352.1_2677812_2678349_+	NA	NA|206aa|down_1|NZ_CP014352.1_2678380_2678998_-	PRK00802, PRK00802, DNA-3-methyladenine glycosylase	NA|210aa|down_2|NZ_CP014352.1_2679046_2679676_+	TIGR02258, UPF0097_protein_AF_2157, 2'-5' RNA ligase	NA|107aa|down_3|NZ_CP014352.1_2679651_2679972_-	NA	NA|334aa|down_4|NZ_CP014352.1_2679995_2680997_-	cd08252, AL_MDR, Arginate lyase and other MDR family members	NA|170aa|down_5|NZ_CP014352.1_2681100_2681610_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|172aa|down_6|NZ_CP014352.1_2681624_2682140_+	COG0386, BtuE, Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]	NA|337aa|down_7|NZ_CP014352.1_2682178_2683189_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|106aa|down_8|NZ_CP014352.1_2683230_2683548_+	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|610aa|down_9|NZ_CP014352.1_2684038_2685868_-	pfam06965, Na_H_antiport_1, Na+/H+ antiporter 1
GCF_001602115.1_ASM160211v1	NZ_CP014352	Acidipropionibacterium acidipropionici strain ATCC 55737 chromosome, complete genome	8	2759613-2759743	8	CRISPRCasFinder	no		DEDDh,WYL,cas3,DinG,csa3,csb1gr7,csb2gr5,csb3,cas1,cas2	Orphan	TATCCACGCGGCGACGCTGTGGTGGCAGAACTCATTCCCG	40	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,DinG,csa3,csb1gr7,csb2gr5,csb3,cas1,cas2	NA,NA|302aa|down_1|NZ_CP014352.1_2760521_2761427_-	NA|497aa|up_9|NZ_CP014352.1_2745875_2747366_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|381aa|up_8|NZ_CP014352.1_2747519_2748662_+	cd08183, Fe-ADH-like, Iron-containing alcohol dehydrogenases-like	NA|596aa|up_7|NZ_CP014352.1_2748665_2750453_-	pfam01301, Glyco_hydro_35, Glycosyl hydrolases family 35	NA|453aa|up_6|NZ_CP014352.1_2750560_2751919_-	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|295aa|up_5|NZ_CP014352.1_2752031_2752916_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|310aa|up_4|NZ_CP014352.1_2752912_2753842_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|347aa|up_3|NZ_CP014352.1_2753970_2755011_+	cd01574, PBP1_LacI, ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators	NA|689aa|up_2|NZ_CP014352.1_2755042_2757109_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|579aa|up_1|NZ_CP014352.1_2757105_2758842_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|226aa|up_0|NZ_CP014352.1_2758832_2759510_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|218aa|down_0|NZ_CP014352.1_2759793_2760447_+	cd07527, HAD_ScGPP-like, subfamily of beta-phosphoglucomutase-like family, similar to Saccharomyces cerevisiae DL-glycerol-3-phosphate phosphatase (GPP1p/ Rhr2p and GPP2p/HOR2p) and 2-deoxyglucose-6-phosphate phosphatase (DOG1p and DOG2p)	NA|302aa|down_1|NZ_CP014352.1_2760521_2761427_-	NA	NA|194aa|down_2|NZ_CP014352.1_2761561_2762143_+	pfam12724, Flavodoxin_5, Flavodoxin domain	NA|326aa|down_3|NZ_CP014352.1_2762216_2763194_-	PRK12354, PRK12354, carbamate kinase; Reviewed	NA|289aa|down_4|NZ_CP014352.1_2763190_2764057_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|290aa|down_5|NZ_CP014352.1_2767060_2767930_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|251aa|down_6|NZ_CP014352.1_2767929_2768682_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|285aa|down_7|NZ_CP014352.1_2768807_2769662_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|423aa|down_8|NZ_CP014352.1_2769799_2771068_-	PRK09290, PRK09290, allantoate amidohydrolase; Reviewed	NA|408aa|down_9|NZ_CP014352.1_2771124_2772348_-	COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
GCF_001602115.1_ASM160211v1	NZ_CP014352	Acidipropionibacterium acidipropionici strain ATCC 55737 chromosome, complete genome	9	2843189-2843293	9	CRISPRCasFinder	no		DEDDh,WYL,cas3,DinG,csa3,csb1gr7,csb2gr5,csb3,cas1,cas2	Orphan	GTTCGGGGAGGAAGCGAGCGCCTGCGCGAGCGTGGAGGGG	40	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,DinG,csa3,csb1gr7,csb2gr5,csb3,cas1,cas2	NA|119aa|up_2|NZ_CP014352.1_2839195_2839552_+,NA	NA|458aa|up_9|NZ_CP014352.1_2831311_2832685_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|257aa|up_8|NZ_CP014352.1_2832845_2833616_+	pfam17933, TetR_C_25, Tetracyclin repressor-like, C-terminal domain	NA|329aa|up_7|NZ_CP014352.1_2833608_2834595_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|539aa|up_6|NZ_CP014352.1_2834591_2836208_+	COG3559, TnrB3, Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]	NA|458aa|up_5|NZ_CP014352.1_2836238_2837612_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|243aa|up_4|NZ_CP014352.1_2837601_2838330_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|121aa|up_3|NZ_CP014352.1_2838558_2838921_-	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]	NA|119aa|up_2|NZ_CP014352.1_2839195_2839552_+	NA	NA|974aa|up_1|NZ_CP014352.1_2839782_2842704_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|110aa|up_0|NZ_CP014352.1_2842803_2843133_+	pfam02575, YbaB_DNA_bd, YbaB/EbfC DNA-binding family	NA|207aa|down_0|NZ_CP014352.1_2843376_2843997_+	PRK00076, recR, recombination protein RecR; Reviewed	NA|105aa|down_1|NZ_CP014352.1_2844058_2844373_+	pfam01910, Thiamine_BP, Thiamine-binding protein	NA|408aa|down_2|NZ_CP014352.1_2844409_2845633_-	cd17393, MFS_MosC_like, Membrane protein MosC and similar proteins of the Major Facilitator Superfamily of transporters	NA|611aa|down_3|NZ_CP014352.1_2845777_2847610_-	pfam01301, Glyco_hydro_35, Glycosyl hydrolases family 35	NA|209aa|down_4|NZ_CP014352.1_2847764_2848391_+	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|260aa|down_5|NZ_CP014352.1_2848387_2849167_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|914aa|down_6|NZ_CP014352.1_2849166_2851908_+	pfam02687, FtsX, FtsX-like permease family	NA|553aa|down_7|NZ_CP014352.1_2851782_2853441_-	pfam06738, ThrE, Putative threonine/serine exporter	NA|268aa|down_8|NZ_CP014352.1_2853597_2854401_+	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|273aa|down_9|NZ_CP014352.1_2854400_2855219_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]
GCF_001602115.1_ASM160211v1	NZ_CP014352	Acidipropionibacterium acidipropionici strain ATCC 55737 chromosome, complete genome	10	2874258-2874392	10	CRISPRCasFinder	no		DEDDh,WYL,cas3,DinG,csa3,csb1gr7,csb2gr5,csb3,cas1,cas2	Orphan	GGCGGCCTTGCGTTCGGCCGCGGCCTTGGC	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,DinG,csa3,csb1gr7,csb2gr5,csb3,cas1,cas2	NA,NA|238aa|down_1|NZ_CP014352.1_2876768_2877482_+	NA|647aa|up_9|NZ_CP014352.1_2862575_2864516_+	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|546aa|up_8|NZ_CP014352.1_2864746_2866384_-	cd10954, CE4_CtAXE_like, Catalytic NodB homology domain of Clostridium thermocellum acetylxylan esterase and its bacterial homologs	NA|346aa|up_7|NZ_CP014352.1_2866519_2867557_-	TIGR03718, R_switched_Alx, integral membrane protein, TerC family	NA|417aa|up_6|NZ_CP014352.1_2867629_2868880_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|295aa|up_5|NZ_CP014352.1_2868965_2869850_+	cd08434, PBP2_GltC_like, The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold	NA|170aa|up_4|NZ_CP014352.1_2869846_2870356_-	cd00293, USP_Like, Usp: Universal stress protein family	NA|432aa|up_3|NZ_CP014352.1_2870358_2871654_-	cd01118, ArsB_permease, Anion permease ArsB	NA|186aa|up_2|NZ_CP014352.1_2871947_2872505_+	cd00293, USP_Like, Usp: Universal stress protein family	NA|139aa|up_1|NZ_CP014352.1_2872558_2872975_+	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB)	NA|120aa|up_0|NZ_CP014352.1_2872971_2873331_+	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|287aa|down_0|NZ_CP014352.1_2875494_2876355_-	cd19088, AKR_AKR13B1, AKR13B family of aldo-keto reductase (AKR)	NA|238aa|down_1|NZ_CP014352.1_2876768_2877482_+	NA	NA|363aa|down_2|NZ_CP014352.1_2877492_2878581_-	pfam01083, Cutinase, Cutinase	NA|154aa|down_3|NZ_CP014352.1_2878742_2879204_-	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea	NA|175aa|down_4|NZ_CP014352.1_2879397_2879922_-	pfam13563, 2_5_RNA_ligase2, 2'-5' RNA ligase superfamily	NA|865aa|down_5|NZ_CP014352.1_2880171_2882766_-	pfam12029, DUF3516, Domain of unknown function (DUF3516)	NA|219aa|down_6|NZ_CP014352.1_2883044_2883701_+	cd00452, KDPG_aldolase, KDPG and KHG aldolase	NA|561aa|down_7|NZ_CP014352.1_2883791_2885474_+	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed	NA|224aa|down_8|NZ_CP014352.1_2885746_2886418_+	COG2949, SanA, Uncharacterized membrane protein [Function unknown]	NA|325aa|down_9|NZ_CP014352.1_2886555_2887530_+	cd13642, PBP2_BCP_1, Substrate-binding domain of osmoregulatory ABC-type glycine betaine/choline/L-proline transport system-like; the type 2 periplasmic-binding protein fold
GCF_001602115.1_ASM160211v1	NZ_CP014352	Acidipropionibacterium acidipropionici strain ATCC 55737 chromosome, complete genome	11	3533698-3533789	11	CRISPRCasFinder	no	DEDDh	DEDDh,WYL,cas3,DinG,csa3,csb1gr7,csb2gr5,csb3,cas1,cas2	Unclear	GGGGACGACCCCTCCACGTCGCTTCG	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,DinG,csa3,csb1gr7,csb2gr5,csb3,cas1,cas2	NA,NA|138aa|down_4|NZ_CP014352.1_3538631_3539045_-,NA|405aa|down_9|NZ_CP014352.1_3544397_3545612_-	NA|171aa|up_9|NZ_CP014352.1_3524052_3524565_+	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]	NA|215aa|up_8|NZ_CP014352.1_3524645_3525290_+	pfam01694, Rhomboid, Rhomboid family	NA|92aa|up_7|NZ_CP014352.1_3525357_3525633_-	pfam01037, AsnC_trans_reg, Lrp/AsnC ligand binding domain	DEDDh|605aa|up_6|NZ_CP014352.1_3525650_3527465_-	PRK07883, PRK07883, DEDD exonuclease domain-containing protein	NA|376aa|up_5|NZ_CP014352.1_3527716_3528844_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|362aa|up_4|NZ_CP014352.1_3528848_3529934_+	TIGR00744, Glucokinase_Glucose_kinase	NA|257aa|up_3|NZ_CP014352.1_3530018_3530789_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|285aa|up_2|NZ_CP014352.1_3530785_3531640_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|409aa|up_1|NZ_CP014352.1_3531623_3532850_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|225aa|up_0|NZ_CP014352.1_3533013_3533688_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|465aa|down_0|NZ_CP014352.1_3533868_3535263_+	pfam01474, DAHP_synth_2, Class-II DAHP synthetase family	NA|216aa|down_1|NZ_CP014352.1_3535336_3535984_+	COG2220, COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]	NA|316aa|down_2|NZ_CP014352.1_3535985_3536933_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|487aa|down_3|NZ_CP014352.1_3537029_3538490_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|138aa|down_4|NZ_CP014352.1_3538631_3539045_-	NA	NA|230aa|down_5|NZ_CP014352.1_3539192_3539882_+	cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP synthase)/TenI	NA|367aa|down_6|NZ_CP014352.1_3539903_3541004_-	cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphate Synthases, head-to-tail	NA|306aa|down_7|NZ_CP014352.1_3541065_3541983_+	TIGR00676, 510-methylenetetrahydrofolate_reductase	NA|752aa|down_8|NZ_CP014352.1_3541909_3544165_-	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only]	NA|405aa|down_9|NZ_CP014352.1_3544397_3545612_-	NA
