assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001602135.1_ASM160213v1	NZ_CP014867	Pseudomonas chlororaphis strain 189 isolate 189 chromosome, complete genome	1	1987945-1988692	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no		cas3,csa3,DinG,DEDDh,PD-DExK,WYL	Orphan	TTTCTAAGCTGCCTATTCGGCAGTGAAC,TTTCTAAGCTGCCTATTCGGCAGTGAAC,TTTCTAAGCTGCCTATTCGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	12,12,11	12	Orphan	cas3,csa3,DinG,DEDDh,PD-DExK,WYL	NA|192aa|up_2|NZ_CP014867.1_1984978_1985554_-,NA|193aa|up_1|NZ_CP014867.1_1985865_1986444_-,NA|124aa|down_0|NZ_CP014867.1_1988933_1989305_-	NA|386aa|up_9|NZ_CP014867.1_1973076_1974234_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|388aa|up_8|NZ_CP014867.1_1974935_1976099_+	cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase	NA|261aa|up_7|NZ_CP014867.1_1976265_1977048_-	sd00010, SLR, Sel1-like repeat	NA|227aa|up_6|NZ_CP014867.1_1977051_1977732_-	PRK05467, PRK05467, Fe(II)-dependent oxygenase superfamily protein; Provisional	NA|758aa|up_5|NZ_CP014867.1_1977938_1980212_+	COG4774, Fiu, Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism]	NA|842aa|up_4|NZ_CP014867.1_1980473_1982999_+	COG0369, CysJ, Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]	NA|514aa|up_3|NZ_CP014867.1_1983122_1984664_-	COG3540, PhoD, Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]	NA|192aa|up_2|NZ_CP014867.1_1984978_1985554_-	NA	NA|193aa|up_1|NZ_CP014867.1_1985865_1986444_-	NA	NA|424aa|up_0|NZ_CP014867.1_1986424_1987696_-	cd14743, PAAR_CT_1, proline-alanine-alanine-arginine (PAAR) domain with C-terminal extension	NA|124aa|down_0|NZ_CP014867.1_1988933_1989305_-	NA	NA|581aa|down_1|NZ_CP014867.1_1990366_1992109_-	PRK10712, PRK10712, PTS system fructose-specific transporter subunits IIBC; Provisional	NA|314aa|down_2|NZ_CP014867.1_1992120_1993062_-	TIGR03828, pfkB, 1-phosphofructokinase	NA|954aa|down_3|NZ_CP014867.1_1993061_1995923_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|332aa|down_4|NZ_CP014867.1_1996219_1997215_+	PRK11303, PRK11303, catabolite repressor/activator	NA|263aa|down_5|NZ_CP014867.1_1997217_1998006_+	cd01310, TatD_DNAse, TatD like proteins;  E	NA|677aa|down_6|NZ_CP014867.1_1998007_2000038_-	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|279aa|down_7|NZ_CP014867.1_2000240_2001077_-	COG3725, AmpE, Membrane protein required for beta-lactamase induction [Defense mechanisms]	NA|187aa|down_8|NZ_CP014867.1_2001073_2001634_-	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA|735aa|down_9|NZ_CP014867.1_2001696_2003901_-	pfam07793, DUF1631, Protein of unknown function (DUF1631)
GCF_001602135.1_ASM160213v1	NZ_CP014867	Pseudomonas chlororaphis strain 189 isolate 189 chromosome, complete genome	2	2526091-2526202	2	CRISPRCasFinder	no		cas3,csa3,DinG,DEDDh,PD-DExK,WYL	Orphan	CCCTCTTTACACCGGGCCCAGCGCAATCAGCGC	33	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,DEDDh,PD-DExK,WYL	NA,NA|147aa|down_0|NZ_CP014867.1_2526256_2526697_-	NA|181aa|up_9|NZ_CP014867.1_2512060_2512603_+	PRK09269, PRK09269, chorismate mutase; Provisional	NA|172aa|up_8|NZ_CP014867.1_2512691_2513207_+	pfam13511, DUF4124, Domain of unknown function (DUF4124)	NA|401aa|up_7|NZ_CP014867.1_2513469_2514672_-	PRK08131, PRK08131, 3-oxoadipyl-CoA thiolase	NA|509aa|up_6|NZ_CP014867.1_2514707_2516234_-	PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated	NA|265aa|up_5|NZ_CP014867.1_2516230_2517025_-	PRK08138, PRK08138, enoyl-CoA hydratase; Provisional	NA|396aa|up_4|NZ_CP014867.1_2517096_2518284_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|300aa|up_3|NZ_CP014867.1_2520149_2521049_+	cd08448, PBP2_LTTR_aromatics_like_2, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to regulators involved in the catabolism of aromatic compounds, contains type 2 periplasmic binding fold	NA|471aa|up_2|NZ_CP014867.1_2521245_2522658_+	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|362aa|up_1|NZ_CP014867.1_2523016_2524102_+	COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]	NA|479aa|up_0|NZ_CP014867.1_2524098_2525535_+	TIGR01818, Nitrogen_assimilation_regulatory_protein, nitrogen regulation protein NR(I)	NA|147aa|down_0|NZ_CP014867.1_2526256_2526697_-	NA	NA|152aa|down_1|NZ_CP014867.1_2526695_2527151_+	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|161aa|down_2|NZ_CP014867.1_2527366_2527849_-	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated	NA|85aa|down_3|NZ_CP014867.1_2527905_2528160_-	TIGR02181, GRX_bact, Glutaredoxin, GrxC family	NA|138aa|down_4|NZ_CP014867.1_2528161_2528575_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|510aa|down_5|NZ_CP014867.1_2528990_2530520_+	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|429aa|down_6|NZ_CP014867.1_2530656_2531943_+	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	NA|437aa|down_7|NZ_CP014867.1_2531974_2533285_+	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|253aa|down_8|NZ_CP014867.1_2533451_2534210_+	pfam04748, Polysacc_deac_2, Divergent polysaccharide deacetylase	NA|252aa|down_9|NZ_CP014867.1_2534345_2535101_-	COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms]
GCF_001602135.1_ASM160213v1	NZ_CP014867	Pseudomonas chlororaphis strain 189 isolate 189 chromosome, complete genome	3	4461527-4461751	3	CRISPRCasFinder	no		cas3,csa3,DinG,DEDDh,PD-DExK,WYL	Orphan	CGAAGACGCGAAGAAGAAAGCCGC	24	0	0	NA	NA	NA	4	4	Orphan	cas3,csa3,DinG,DEDDh,PD-DExK,WYL	NA,NA	NA|158aa|up_9|NZ_CP014867.1_4453210_4453684_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|74aa|up_8|NZ_CP014867.1_4453946_4454168_+	TIGR02605, CxxC_CxxC_SSSS, putative regulatory protein, FmdB family	NA|592aa|up_7|NZ_CP014867.1_4454264_4456040_+	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|249aa|up_6|NZ_CP014867.1_4456157_4456904_+	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator	NA|175aa|up_5|NZ_CP014867.1_4457060_4457585_+	PRK00039, ruvC, Holliday junction resolvase; Reviewed	NA|203aa|up_4|NZ_CP014867.1_4457699_4458308_+	PRK00116, ruvA, Holliday junction branch migration protein RuvA	NA|353aa|up_3|NZ_CP014867.1_4458308_4459367_+	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB	NA|156aa|up_2|NZ_CP014867.1_4459506_4459974_+	TIGR02799, Acyl-CoA_thioesterase_YbgC, tol-pal system-associated acyl-CoA thioesterase	NA|232aa|up_1|NZ_CP014867.1_4459963_4460659_+	TIGR02796, Protein_TolQ, TolQ protein	NA|151aa|up_0|NZ_CP014867.1_4460673_4461126_+	TIGR02801, Protein_TolR, TolR protein	NA|434aa|down_0|NZ_CP014867.1_4462201_4463503_+	PRK00178, tolB, Tol-Pal system protein TolB	NA|166aa|down_1|NZ_CP014867.1_4463555_4464053_+	TIGR02802, Peptidoglycan-associated_lipoprotein, peptidoglycan-associated lipoprotein	NA|275aa|down_2|NZ_CP014867.1_4464059_4464884_+	COG1729, COG1729, Uncharacterized protein conserved in bacteria [Function unknown]	NA|216aa|down_3|NZ_CP014867.1_4465050_4465698_+	TIGR04349, Radical_SAM_domain_protein, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE, gammaproteobacterial type	NA|234aa|down_4|NZ_CP014867.1_4465699_4466401_+	pfam06508, QueC, Queuosine biosynthesis protein QueC	NA|451aa|down_5|NZ_CP014867.1_4466917_4468270_-	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|623aa|down_6|NZ_CP014867.1_4468266_4470135_-	pfam07514, TraI_2, Putative helicase	NA|119aa|down_7|NZ_CP014867.1_4470653_4471010_-	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|98aa|down_8|NZ_CP014867.1_4471012_4471306_-	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|86aa|down_9|NZ_CP014867.1_4471533_4471791_+	COG1282, PntB, NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
GCF_001602135.1_ASM160213v1	NZ_CP014867	Pseudomonas chlororaphis strain 189 isolate 189 chromosome, complete genome	4	6125865-6125949	4	CRISPRCasFinder	no		cas3,csa3,DinG,DEDDh,PD-DExK,WYL	Orphan	TGACCGCAGCAACGGATATGTACAC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,DEDDh,PD-DExK,WYL	NA,NA|88aa|down_4|NZ_CP014867.1_6144226_6144490_-,NA|133aa|down_5|NZ_CP014867.1_6144963_6145362_+	NA|317aa|up_9|NZ_CP014867.1_6115675_6116626_+	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|208aa|up_8|NZ_CP014867.1_6116994_6117618_-	COG4795, PulJ, Type II secretory pathway, component PulJ [Intracellular trafficking and secretion]	NA|154aa|up_7|NZ_CP014867.1_6117614_6118076_-	TIGR01708, Type_II_secretion_system_protein_H, type II secretion system protein H	NA|144aa|up_6|NZ_CP014867.1_6118183_6118615_+	pfam11356, T2SSC, Type II secretion system protein C	NA|143aa|up_5|NZ_CP014867.1_6118796_6119225_-	TIGR01707, Type_II_secretion_system_protein_I, type II secretion system protein I	NA|160aa|up_4|NZ_CP014867.1_6119373_6119853_+	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G	NA|328aa|up_3|NZ_CP014867.1_6119861_6120845_+	pfam03934, T2SSK, Type II secretion system (T2SS), protein K	NA|398aa|up_2|NZ_CP014867.1_6120841_6122035_+	TIGR01709, Type_II_secretion_system_protein_L, type II secretion system protein L	NA|189aa|up_1|NZ_CP014867.1_6122027_6122594_+	pfam04612, T2SSM, Type II secretion system (T2SS), protein M	NA|804aa|up_0|NZ_CP014867.1_6122590_6125002_+	TIGR02517, Putative_type_II_secretion_system_protein_D, type II secretion system protein D	NA|474aa|down_0|NZ_CP014867.1_6125990_6127412_+	TIGR02533, Type_II_secretion_system_protein_E, type II secretion system protein E	NA|404aa|down_1|NZ_CP014867.1_6127411_6128623_+	TIGR02120, Putative_general_secretion_pathway_protein_F, type II secretion system protein F	NA|389aa|down_2|NZ_CP014867.1_6129154_6130321_+	cd13565, PBP2_PstS, Substrate binding domain of ABC-type phosphate transporter, a member of the type 2 periplasmic-binding fold superfamily	NA|4226aa|down_3|NZ_CP014867.1_6130534_6143212_+	pfam12545, DUF3739, Filamentous haemagglutinin family outer membrane protein	NA|88aa|down_4|NZ_CP014867.1_6144226_6144490_-	NA	NA|133aa|down_5|NZ_CP014867.1_6144963_6145362_+	NA	NA|201aa|down_6|NZ_CP014867.1_6145455_6146058_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|201aa|down_7|NZ_CP014867.1_6146432_6147035_+	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|580aa|down_8|NZ_CP014867.1_6147031_6148771_+	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|608aa|down_9|NZ_CP014867.1_6148791_6150615_+	COG5306, COG5306, Uncharacterized conserved protein [Function unknown]
