The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP010840	Bordetella pertussis strain H379 chromosome, complete genome	4105330	27282	71085	4105330	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|60297_61524_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|61523_61937_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|62126_63068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|63491_64466_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|64522_65104_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|65116_65419_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|65537_66596_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|66630_67902_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|68531_69713_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|70134_71085_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP010840	Bordetella pertussis strain H379 chromosome, complete genome	4105330	78683	137157	4105330	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|84572_85745_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|86530_87763_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|95337_95493_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97258_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|102882_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|123220_124126_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|124122_124956_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|125792_126803_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|126799_127189_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|128082_129336_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|129426_131127_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|131553_132201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|132199_133639_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|133731_134034_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|134061_134940_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|136206_137157_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP010840	Bordetella pertussis strain H379 chromosome, complete genome	4105330	165940	226451	4105330	transposase,tRNA,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|165940_166891_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168334_169237_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169214_169844_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170126_171557_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171590_172220_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172268_173876_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173900_174584_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174665_175142_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175348_176299_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177414_177942_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178033_178849_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178909_179644_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179681_181760_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182009_182282_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182383_183469_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183472_185377_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185373_189048_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189108_189672_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189679_190102_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|190129_190549_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|190577_191051_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|191150_191648_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191802_194073_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|194121_195354_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195452_196403_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196505_197141_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197137_198031_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198425_199526_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199607_199982_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200041_202906_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203050_203791_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203860_205072_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205100_206069_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206682_207633_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207789_208113_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208217_209258_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|209263_210043_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210088_210385_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210410_210686_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210742_211387_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211386_212073_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|212202_213054_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213104_213830_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213861_215211_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215322_216255_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|216712_219508_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|220101_223044_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223115_223835_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223873_224422_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224576_225476_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225500_226451_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP010840	Bordetella pertussis strain H379 chromosome, complete genome	4105330	234383	287971	4105330	transposase,tRNA,protease	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|234383_235334_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235420_236371_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236367_237318_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237416_238214_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239163_239574_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|240595_241339_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241382_242426_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242596_244699_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246109_247066_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247084_247576_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247572_248928_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248928_249627_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249623_250325_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250577_251627_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251732_252674_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252670_254560_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254646_255285_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|255427_256813_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256743_257280_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257431_258823_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258839_259820_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259955_260939_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261003_261903_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262009_263764_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263771_264896_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264909_265890_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|266620_267571_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268130_268676_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|268759_270379_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270394_271549_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271562_271688_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271684_273436_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273432_275112_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275174_275723_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276865_277144_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278187_279138_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|279155_279302_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279415_279577_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|279584_279725_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|280243_280693_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280702_281314_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|281472_282327_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282346_283729_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283793_284435_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284574_285033_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285057_285834_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285887_287024_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287020_287971_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP010840	Bordetella pertussis strain H379 chromosome, complete genome	4105330	556356	615656	4105330	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_023852617.1|556356_557307_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|558630_559407_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|559441_561214_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|561215_562118_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|562242_562602_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|562633_563596_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|563694_564645_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|564657_565593_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|565652_566492_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|566488_567658_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|567654_568944_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|568986_569361_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|569466_570204_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|570211_570916_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|571179_572700_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|572755_573319_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|573337_574369_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|574365_575154_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|575174_575333_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|575329_576319_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|578075_579026_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|580248_581151_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|581152_582007_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|582053_583163_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|583173_583692_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|583721_584354_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|584425_585085_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|585081_586302_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|586570_587443_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|587598_588336_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|588338_589970_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|590065_591055_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|591051_591762_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_062826590.1|591857_592874_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|593145_593772_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|593827_594955_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|594960_600678_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|601245_602190_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|602378_603314_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|603431_605003_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|605082_606291_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|606788_607706_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|610066_610288_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|610618_611635_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|611719_611971_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|611974_612790_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|612902_613781_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|613892_615656_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP010840	Bordetella pertussis strain H379 chromosome, complete genome	4105330	621811	675552	4105330	transposase	Salmonella_phage(33.33%)	48	NA	NA
WP_010930179.1|621811_622762_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|622857_623829_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|623833_624514_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|624651_625044_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|625151_626168_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|626407_627193_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|627287_628697_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|628707_629508_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|629528_630299_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|630341_630809_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|630805_631756_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|633704_634583_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|635509_638488_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|638841_639792_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|639788_640877_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|640912_641776_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|642915_643305_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|643308_644091_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|644124_644910_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|645185_646325_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|646321_647113_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|647109_647859_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|647855_648728_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|648727_649729_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|649725_650889_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|650914_651598_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|651551_652886_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|652878_653973_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|654739_655690_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|657630_658890_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|658886_660425_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|660421_661618_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|661614_662991_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|663002_664019_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|664087_665323_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|665423_666218_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|666587_666995_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|667412_667685_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|667854_668079_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|668266_669121_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|669221_669524_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|669568_670186_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|670202_670511_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|670507_672223_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|672225_672843_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|672943_673528_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|673552_674197_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_023995489.1|674601_675552_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP010840	Bordetella pertussis strain H379 chromosome, complete genome	4105330	724490	764440	4105330	integrase,transposase,tRNA,protease	Pseudomonas_phage(33.33%)	30	721738:721756	741626:741644
721738:721756	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931308.1|724490_725087_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|725083_725866_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|725938_727030_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|727309_728437_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|728778_729825_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|729972_733092_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|733093_736045_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|736060_737272_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_005013747.1|737455_738406_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|738422_738917_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|738920_739178_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|739721_740633_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|740714_740999_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|741782_742733_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
741626:741644	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|743151_745716_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|745760_747614_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|747946_749518_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_162291319.1|750786_750942_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|750959_751910_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|751995_752736_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|752962_753910_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|755297_756248_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994811.1|756265_756478_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814139.1|756441_757257_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|757389_758829_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|758842_759184_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|759238_760894_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|761045_762056_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|762188_762962_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|763489_764440_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP010840	Bordetella pertussis strain H379 chromosome, complete genome	4105330	774367	821985	4105330	transposase,tRNA,holin,protease	Bovine_alphaherpesvirus(10.0%)	47	NA	NA
WP_005012808.1|774367_775318_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|775456_776209_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_010931273.1|776447_778172_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
WP_004566001.1|778191_779451_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|779465_780560_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_023995440.1|780556_782683_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
WP_010931276.1|782695_783376_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|783653_785027_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|785028_786048_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|786111_787083_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|787147_788098_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|788196_789039_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|789038_789374_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010931278.1|789444_790863_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_003807194.1|791142_792183_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003818441.1|792262_792514_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_010925730.1|792624_793788_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_010931279.1|794071_794926_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931280.1|794922_795813_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_003807183.1|795855_796767_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931281.1|796793_797486_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_010931282.1|797500_798481_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931283.1|798493_800635_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003818434.1|800683_801652_-	putative membrane protein	NA	NA	NA	NA	NA
WP_019247300.1|801642_802311_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_010931286.1|802271_803207_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931287.1|803203_804100_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931288.1|804096_804819_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_019248127.1|804809_804974_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807166.1|805147_805651_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_010931290.1|805927_807043_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807164.1|807185_807650_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931291.1|807797_808337_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|808358_809693_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|809706_810012_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|810436_811018_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|811099_812050_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|812148_813099_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|813539_814445_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_023853019.1|814500_816105_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|816361_817867_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|817881_818346_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_005012067.1|818635_819586_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268687.1|819603_819792_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820745.1|819748_820279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|820278_820590_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|821034_821985_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP010840	Bordetella pertussis strain H379 chromosome, complete genome	4105330	1006200	1100237	4105330	transposase	Bacillus_virus(30.0%)	88	NA	NA
WP_005012067.1|1006200_1007151_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1007253_1007916_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1008010_1008181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1008533_1009535_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1009537_1010734_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1010754_1011558_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1011638_1011935_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1011965_1012529_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1012569_1013427_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1013434_1014184_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1014205_1015078_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1015106_1015886_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1015919_1016717_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1019371_1019764_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1019757_1020618_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1020621_1021584_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1022360_1023050_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1023910_1024861_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1025210_1026080_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1026150_1026846_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1026835_1027345_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1027341_1028562_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1028509_1029412_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1030298_1031585_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1031623_1032997_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1033035_1033737_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1034035_1035025_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1035125_1035587_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1035602_1036151_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1036292_1037768_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1037873_1038965_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1038968_1039751_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1039760_1040549_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1041674_1042109_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1042105_1043116_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1043159_1044086_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1044372_1044741_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_154698394.1|1044793_1044940_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853143.1|1044957_1045908_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1045952_1048379_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1048427_1049120_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1049192_1050392_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1050409_1051315_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1051430_1052360_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1052385_1053732_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1053759_1054509_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1054522_1055305_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1055497_1056448_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1056509_1057619_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1058131_1058968_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1059037_1060003_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1059999_1060950_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998107.1|1060967_1061138_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|1061335_1061878_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1062913_1063864_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1064105_1064474_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1064519_1065644_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1066778_1067531_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1067622_1068243_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1068346_1069297_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1069293_1071402_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1071546_1072206_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1072237_1072702_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1072977_1073163_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1073214_1073967_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1073973_1075236_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1075277_1076516_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1077593_1078721_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1078731_1079559_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1079545_1080412_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1081778_1082183_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1082274_1083225_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120814.1|1083242_1083407_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1083594_1084506_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1084520_1085231_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1085227_1086472_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1086473_1086908_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1086936_1087242_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1087340_1088291_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1088347_1089502_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1089576_1090527_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1091058_1091856_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1091903_1092557_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1092513_1093602_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1093766_1095992_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1098269_1099166_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_162268686.1|1099119_1099269_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1099286_1100237_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP010840	Bordetella pertussis strain H379 chromosome, complete genome	4105330	1130622	1201594	4105330	transposase,protease	uncultured_Mediterranean_phage(25.0%)	53	NA	NA
WP_005012808.1|1130622_1131573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1131629_1132742_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1135125_1136076_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1136666_1137443_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1137560_1137824_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1137924_1138929_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1139129_1140731_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1140756_1141515_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1141606_1142263_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1142353_1143118_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1143127_1143316_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1143371_1144415_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1144411_1144825_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1144821_1145442_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1145722_1146673_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1146840_1148232_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1148304_1148883_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1148999_1150397_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1150512_1151718_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1151817_1152336_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1152430_1152676_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1152903_1153218_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1153307_1158497_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1158493_1160662_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1160717_1163033_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1163037_1164357_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1164375_1166049_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1166053_1166722_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1166878_1170700_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_154698391.1|1170854_1171013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930800.1|1171030_1171981_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1172002_1173148_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1173296_1174226_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1174222_1175311_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1175307_1176111_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1176107_1176839_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1176896_1178186_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1178282_1178885_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1183439_1183778_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1184485_1184752_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1186458_1187409_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1187405_1188737_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1189997_1191998_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1191990_1192632_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1192628_1193036_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1193032_1193833_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1193907_1194612_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1194643_1195438_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931070.1|1195434_1196385_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1196483_1197434_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1197532_1197967_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1198049_1200386_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1200577_1201594_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP010840	Bordetella pertussis strain H379 chromosome, complete genome	4105330	1242665	1324800	4105330	transposase,tRNA	Bacillus_virus(25.0%)	60	NA	NA
WP_010929591.1|1242665_1243616_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931074.1|1243703_1245356_+	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010931073.1|1245366_1246155_+	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_003813284.1|1246154_1246625_+	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931072.1|1246699_1248013_+	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_010931071.1|1248066_1248672_-	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010927663.1|1248988_1249939_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1249935_1250886_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1251146_1252175_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1252254_1253553_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1253549_1254131_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1254443_1258490_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1258730_1266392_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1266388_1267339_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1268478_1268952_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1269091_1269712_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|1269847_1270648_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1270702_1271794_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1271815_1272259_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1272287_1272920_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1273030_1273447_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1273439_1274132_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1274238_1274613_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931058.1|1274689_1275499_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1275594_1276539_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1276577_1277549_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1277639_1278077_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1278135_1279017_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1280020_1280881_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1280913_1282296_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1282292_1283312_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1283684_1284179_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1284186_1284927_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1285007_1286612_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1286651_1287440_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931048.1|1288642_1289731_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931047.1|1290611_1291424_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1291436_1291745_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1291862_1293593_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|1293594_1294740_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810957.1|1295658_1296126_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1296261_1297644_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1297640_1298765_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1298761_1301398_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1301813_1302764_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1306510_1307122_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1307344_1308805_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1308901_1310494_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1310847_1311105_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1311106_1312447_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1312542_1313232_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1313244_1314675_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1316399_1317221_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1317231_1318803_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1318831_1319809_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1319835_1320639_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1320635_1321430_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1321437_1322673_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1322665_1323100_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1323849_1324800_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP010840	Bordetella pertussis strain H379 chromosome, complete genome	4105330	1328911	1369580	4105330	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_005013747.1|1328911_1329862_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1329902_1330973_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1330995_1331874_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1332045_1333017_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1333179_1334022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1334183_1334864_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1334857_1336027_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1336023_1337055_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1337098_1338340_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1338374_1339907_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1339987_1340611_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1340641_1341253_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1341288_1341759_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1342190_1343195_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1343231_1344746_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1344749_1345709_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1345737_1346541_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1346542_1348177_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1348260_1349322_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1349520_1349790_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1349793_1350318_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1350733_1351684_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1351680_1352715_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1352823_1353462_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1353756_1353984_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1354106_1354820_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_077598822.1|1355064_1356015_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1356118_1356400_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1356514_1357963_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1358073_1359024_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|1359020_1359470_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|1359664_1360615_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812834.1|1360950_1361148_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_003812832.1|1361163_1361523_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_010926359.1|1361597_1362620_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_010931007.1|1362632_1365050_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010931006.1|1365055_1365397_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_003812822.1|1365455_1365866_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931005.1|1366365_1367457_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|1367640_1368237_+	lipoprotein	NA	NA	NA	NA	NA
WP_004567479.1|1368336_1368519_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|1368629_1369580_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP010840	Bordetella pertussis strain H379 chromosome, complete genome	4105330	1742159	1799437	4105330	transposase,tRNA	Klosneuvirus(14.29%)	49	NA	NA
WP_010930522.1|1742159_1743110_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1743208_1745809_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1745915_1746920_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1747028_1748369_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1748409_1749438_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1749633_1750179_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1750175_1750736_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1750834_1751785_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1751822_1752410_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1752427_1752811_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1754170_1755463_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1755597_1756638_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1756735_1757752_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1758019_1758667_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1758792_1759551_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1759535_1760315_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1760332_1761217_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1761213_1761993_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|1762097_1762697_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1762985_1763738_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1763856_1765257_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1765280_1765679_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1765854_1766055_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1766193_1766922_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1767055_1768471_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1768474_1769338_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1769350_1770100_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1770282_1772298_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|1772279_1772948_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1773722_1774673_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1774821_1775160_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1775217_1775379_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1775410_1775611_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1775876_1778450_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1778520_1781070_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1783620_1784109_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1784200_1785352_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1785405_1786227_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1786265_1787495_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1787623_1788064_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1788174_1789125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930538.1|1789121_1789595_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_158291845.1|1789944_1790097_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930540.1|1790695_1791904_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_010930541.1|1792008_1792515_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930542.1|1792517_1795379_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930543.1|1795368_1796334_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_076879626.1|1796393_1798388_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_005012067.1|1798486_1799437_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP010840	Bordetella pertussis strain H379 chromosome, complete genome	4105330	1851735	1911005	4105330	transposase,tRNA,protease	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1851735_1852686_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1852810_1853620_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|1853820_1854771_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1856044_1857262_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1858318_1859221_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1859297_1860170_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1860300_1860669_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1860726_1861773_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1861968_1863225_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1863229_1864567_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1864716_1865673_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1865775_1866708_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1866823_1867144_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1867136_1867496_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1867543_1869118_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1869170_1870115_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1870132_1870963_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1870955_1872590_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1872586_1873942_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1874848_1876426_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1876429_1877704_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1877801_1878176_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1879891_1881025_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1881062_1881668_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1881664_1882483_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1882554_1885179_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1885165_1885420_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1885486_1886068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1886371_1886632_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1886797_1887421_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1887420_1888194_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1888190_1889399_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1889424_1889898_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1889971_1890922_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1891020_1891971_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1892069_1893419_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1894184_1894940_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1895032_1897915_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1898237_1898663_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1898690_1899839_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1899835_1900342_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1900348_1901644_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|1901702_1902989_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1902990_1903629_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1903631_1904792_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1904818_1906174_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1906177_1907248_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1907386_1907623_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1907710_1908817_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1908782_1910087_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1910105_1911005_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 16
NZ_CP010840	Bordetella pertussis strain H379 chromosome, complete genome	4105330	1921245	1965568	4105330	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
WP_005013747.1|1921245_1922196_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1922294_1923245_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1923444_1924530_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1924545_1925307_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|1925303_1926263_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|1926325_1926826_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1926858_1927602_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1927697_1927937_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1927950_1928103_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1928188_1929679_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1929770_1930709_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1930705_1930882_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1930884_1931547_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1933168_1933312_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1933308_1934283_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|1934177_1934432_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1934449_1935400_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1935396_1936671_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1936774_1937968_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1937964_1938618_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1938614_1940051_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1940038_1940398_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1941212_1941353_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1941370_1942321_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1943366_1945232_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1945489_1947010_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1947097_1947748_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|1948696_1949992_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1950013_1950898_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1950996_1951872_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1951861_1952218_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1952348_1953323_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1953452_1953632_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1953729_1954254_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1954264_1955101_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1955213_1955585_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1955581_1956133_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1956148_1957840_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1957888_1958569_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1958816_1959281_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1959450_1960380_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1960392_1961040_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1961113_1962931_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1963014_1963965_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1964617_1965568_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP010840	Bordetella pertussis strain H379 chromosome, complete genome	4105330	1982894	2053035	4105330	transposase	Vibrio_phage(25.0%)	60	NA	NA
WP_005013747.1|1982894_1983845_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247855.1|1984330_1984507_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812044.1|1985191_1986163_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930746.1|1986166_1987021_+	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_010930745.1|1987039_1987861_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_019247853.1|1987892_1988687_+	amidase	NA	NA	NA	NA	NA
WP_076879628.1|1988735_1989341_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247851.1|1989298_1990132_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930744.1|1990417_1991923_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_003812032.1|1991964_1992747_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_003812030.1|1992816_1993263_-	membrane protein	NA	NA	NA	NA	NA
WP_010930743.1|1993259_1994486_-	NnrS family protein	NA	NA	NA	NA	NA
WP_003812026.1|1994478_1994883_-	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_003812024.1|1995042_1995345_+	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_005013747.1|1995341_1996292_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1996513_1997464_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1997562_1998528_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1998665_1999565_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2002159_2003647_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2003657_2004854_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2004926_2006246_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2006242_2007118_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2007148_2008297_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2008314_2008629_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2008650_2009373_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2009372_2010191_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2010195_2010723_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2010728_2011985_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2012343_2013483_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2013560_2014433_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2015303_2016254_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2016213_2016849_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2017207_2018530_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2018848_2019670_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2021094_2021667_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2021706_2023536_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2023498_2024557_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2024594_2025056_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2025140_2025887_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2027377_2030608_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2030674_2032006_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2032258_2032633_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2032735_2033914_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2033924_2034515_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2034625_2035432_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2035457_2036252_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2037252_2038227_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2038385_2038898_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2039054_2040026_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2041770_2042577_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2042573_2043875_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2043825_2044590_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2044703_2045474_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2045558_2046746_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2046818_2047193_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2047293_2048556_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2048552_2049410_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2049582_2050584_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005013747.1|2050901_2051852_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|2052084_2053035_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP010840	Bordetella pertussis strain H379 chromosome, complete genome	4105330	2247226	2308574	4105330	transposase,tRNA	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2247226_2248177_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2248293_2249013_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2249185_2250172_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2250172_2250655_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2250658_2251942_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2251938_2252877_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2252873_2254583_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2254592_2255840_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2257450_2258740_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_020699606.1|2259877_2260636_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_010930601.1|2261312_2262056_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2262130_2262871_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2263066_2263903_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2263953_2264724_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2264773_2265826_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2265822_2266449_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2266445_2267480_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2267658_2268675_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2268773_2269724_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2272464_2273754_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2273872_2274310_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2274353_2275562_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2275708_2276173_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_005015810.1|2276196_2277147_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2278131_2278905_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2278901_2279900_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2279984_2280761_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2280916_2282521_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2282901_2284026_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2284152_2284776_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2284772_2286674_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2286722_2287517_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2287529_2288531_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2288527_2289034_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2289026_2289875_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2289972_2290515_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2290558_2291509_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2291664_2291991_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2291987_2292272_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2292268_2292748_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2292744_2294373_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2294369_2294714_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2294713_2297647_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2298805_2299756_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2299854_2300151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2300257_2301175_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2301179_2301893_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2301906_2302878_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2304597_2304978_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2304981_2306169_+	MFS transporter	NA	NA	NA	NA	NA
WP_170954298.1|2306592_2307330_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2307623_2308574_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP010840	Bordetella pertussis strain H379 chromosome, complete genome	4105330	2329365	2400519	4105330	transposase	Tetraselmis_virus(10.0%)	55	NA	NA
WP_005012067.1|2329365_2330316_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2330868_2332494_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2332543_2333578_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2333580_2334927_-	BatD family protein	NA	NA	NA	NA	NA
WP_010930477.1|2334923_2336438_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2336428_2337439_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2337912_2338854_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2338862_2339831_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2341370_2342339_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2342516_2343506_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2343552_2344311_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2344500_2345238_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2345336_2346287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2346471_2347254_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2347247_2347949_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2348188_2348791_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2350117_2351068_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2351064_2352621_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2352613_2353387_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2353445_2354396_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2354477_2355653_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2355666_2357724_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2357720_2358746_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2358757_2360047_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2360069_2361167_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2361163_2362054_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2362050_2364135_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2364166_2365336_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2365377_2366118_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2366117_2366888_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247171.1|2367212_2367380_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930465.1|2367743_2368529_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2368555_2370640_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2370807_2372763_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2373086_2373587_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2373685_2375212_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2375349_2376237_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2376251_2377205_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2377256_2379347_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2379362_2379749_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2382442_2383246_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2384539_2385442_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2385506_2386283_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2386604_2387654_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2387777_2389448_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2389452_2390247_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2390345_2391296_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2391315_2392221_-	pirin family protein	NA	NA	NA	NA	NA
WP_023999352.1|2392298_2392997_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2393156_2394101_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2394110_2395598_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2395597_2396665_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2396728_2398141_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2398326_2399547_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2399568_2400519_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP010840	Bordetella pertussis strain H379 chromosome, complete genome	4105330	2496346	2555127	4105330	transposase,tRNA	Planktothrix_phage(28.57%)	50	NA	NA
WP_003812608.1|2496346_2498296_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2498683_2499460_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2499465_2499858_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2500279_2501230_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2501226_2502324_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2502355_2503306_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2505087_2506329_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2506340_2507114_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2507140_2508091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2508570_2509227_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2509241_2510909_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2510911_2511541_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2511752_2512847_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2512991_2513804_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2513807_2515511_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2515561_2516692_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2516878_2517955_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2518036_2518687_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2518701_2520105_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2520388_2521207_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2521203_2521908_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2522807_2523923_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2523956_2524331_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2524353_2525511_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2525523_2525757_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2526391_2529361_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2529375_2529585_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2529736_2530366_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2530362_2532453_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2532476_2533157_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2533153_2533714_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2533720_2534818_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2534970_2535564_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2535560_2536853_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2536866_2537409_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2537418_2538255_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2538288_2539350_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2539391_2540444_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2540459_2540762_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2540903_2541854_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2541871_2542036_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2542032_2543727_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2543723_2544809_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2544856_2545756_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2545766_2546411_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2547432_2550675_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2550685_2551840_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2552066_2553029_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_077074155.1|2553127_2554078_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2554176_2555127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP010840	Bordetella pertussis strain H379 chromosome, complete genome	4105330	2607662	2674162	4105330	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2607662_2608613_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2608982_2609555_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2609557_2610568_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2610560_2611061_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2611071_2611413_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2611424_2612216_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2612232_2612502_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2612524_2613313_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2613359_2614376_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2614592_2616035_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2616213_2617833_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2617953_2619774_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2619852_2621385_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2621418_2623065_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2623134_2624157_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2624174_2625308_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2625310_2626000_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2625999_2626785_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2626828_2627593_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2627631_2629053_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2629118_2629823_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2629870_2630290_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2630302_2630710_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2630893_2631604_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2631730_2632021_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2632038_2632521_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2637026_2638181_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2638486_2639503_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2639749_2640538_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2640604_2641285_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2641281_2642052_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2642150_2643101_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2643156_2644074_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2644084_2645263_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2645282_2646278_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2647866_2648475_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2648462_2649503_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2649520_2650483_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2650479_2651673_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2651669_2652467_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2652492_2653479_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2653497_2655537_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2655738_2656419_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2656432_2657344_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2657340_2657919_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2658057_2658963_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2658970_2662390_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2662377_2664978_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2665933_2666566_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2666959_2667718_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2667714_2668917_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2669104_2670055_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2670962_2672108_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2672094_2672850_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2672966_2673146_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2673211_2674162_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP010840	Bordetella pertussis strain H379 chromosome, complete genome	4105330	2873548	2946873	4105330	transposase,tRNA,protease	Catovirus(22.22%)	53	NA	NA
WP_010930211.1|2873548_2874904_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2876382_2877105_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2877159_2878143_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2878272_2879223_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2879219_2880122_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2880209_2880968_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2880980_2882072_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2882169_2883597_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2883826_2885041_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_023999315.1|2885086_2887957_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2890367_2890856_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2890981_2893678_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2893832_2896115_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2896288_2896912_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2897010_2897961_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2898007_2898562_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2898629_2899475_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2899544_2900513_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023995083.1|2900512_2901376_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2904208_2908135_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2908870_2912101_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2912382_2913210_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2913243_2913939_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2913931_2915212_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2915221_2916199_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2916180_2917881_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2917983_2919087_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2919117_2919873_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2919879_2921400_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2921442_2921745_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2921741_2922374_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2922452_2924318_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2924314_2925109_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2925137_2926253_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2927157_2928036_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2928035_2928860_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2929027_2929978_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2930190_2933040_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2933021_2933750_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2933890_2935354_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2935350_2935722_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2935739_2937053_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2937089_2937548_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_155120815.1|2937502_2937643_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2937660_2938611_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2938607_2939621_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2939760_2940747_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2941105_2941813_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2942393_2943344_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2943495_2944098_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2944116_2944749_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2944793_2945045_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2944986_2946873_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
>prophage 23
NZ_CP010840	Bordetella pertussis strain H379 chromosome, complete genome	4105330	2958598	3008211	4105330	transposase,tRNA,holin	uncultured_Mediterranean_phage(50.0%)	42	NA	NA
WP_005013747.1|2958598_2959549_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2959575_2960040_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2961246_2963535_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2963651_2964524_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2964566_2965721_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2965755_2966586_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2966669_2968214_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2968256_2968616_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2968617_2969031_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2969071_2969389_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2969473_2970190_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2970453_2971875_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2971941_2974689_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|2975021_2976038_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2976373_2977015_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2977105_2978542_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2978699_2979773_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2979769_2980906_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2981050_2981395_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2981461_2983342_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|2983391_2984327_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|2984659_2985676_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2986613_2988041_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2988037_2989060_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2989049_2989523_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2989663_2990551_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2990547_2992191_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|2992187_2993237_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2994025_2995042_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2995141_2995774_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2995782_2996172_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2996224_2997277_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2998140_2999847_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2999920_3000421_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3000435_3002493_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3002519_3002813_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3002914_3003862_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3003874_3004750_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3004870_3005431_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3005465_3005789_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3006224_3006962_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3007260_3008211_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP010840	Bordetella pertussis strain H379 chromosome, complete genome	4105330	3029162	3101655	4105330	transposase	Bacillus_virus(16.67%)	57	NA	NA
WP_010929584.1|3029162_3030113_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3030155_3031331_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3031552_3033343_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930127.1|3035028_3037734_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3038026_3039781_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3039777_3040404_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3040400_3041252_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3041327_3043442_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3043628_3044243_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3044388_3044640_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3044709_3046092_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3046088_3049268_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3050075_3050993_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3051044_3051776_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3051835_3052408_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3053916_3054933_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3055070_3056120_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3056224_3057175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3057270_3057996_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3058206_3058587_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3058892_3059765_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3059772_3060153_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3060306_3061581_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3063068_3063977_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3064774_3065839_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3067675_3068677_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3068899_3069541_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3069623_3071450_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3071693_3072623_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3072622_3073372_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3073443_3074358_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3074377_3075523_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3075583_3076495_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3076575_3077526_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3077624_3078209_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3078243_3079233_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3079229_3080171_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3080167_3081388_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3081430_3081745_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3081936_3082296_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3082297_3084013_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3084200_3084872_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3084886_3086215_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3086211_3087111_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3087197_3088283_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|3088275_3089409_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|3089408_3092090_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3092460_3093042_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3093167_3093893_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3093889_3094567_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3094782_3095964_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3096736_3096919_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3096948_3097899_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3098028_3098421_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3098697_3099609_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3099733_3100708_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3100704_3101655_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP010840	Bordetella pertussis strain H379 chromosome, complete genome	4105330	3115162	3169729	4105330	transposase,holin	Bacillus_phage(33.33%)	45	NA	NA
WP_005012067.1|3115162_3116113_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930066.1|3116211_3117162_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3117274_3117526_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3118031_3119150_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3119269_3119482_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3119641_3119863_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3119915_3120866_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3122042_3123413_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3123445_3124237_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3124249_3125305_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3125330_3126206_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3126311_3126560_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3126594_3128049_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3128045_3128567_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3128595_3129948_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3130171_3133060_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3135204_3136506_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3136520_3137237_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3137518_3138199_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3138210_3138378_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3138486_3138633_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3138726_3139386_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3139784_3141617_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3141613_3142564_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3143727_3145443_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3145453_3145945_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3146017_3147034_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3147201_3147981_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3147999_3148527_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3148820_3149090_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3149180_3151340_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3151460_3152180_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3152176_3153127_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3153267_3154485_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3154478_3155090_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3155723_3156701_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3156844_3157591_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3157612_3158059_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3158846_3161078_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_003813993.1|3161100_3161901_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|3162182_3163415_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|3163525_3164515_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3164545_3165934_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|3167532_3168516_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|3168712_3169729_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP010840	Bordetella pertussis strain H379 chromosome, complete genome	4105330	3234187	3307349	4105330	transposase	Klosneuvirus(16.67%)	57	NA	NA
WP_041337087.1|3234187_3235138_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3235134_3236154_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3236163_3238872_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3239019_3239676_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3239774_3240725_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3240872_3241766_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3241965_3243660_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3243694_3244621_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3244689_3245787_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3245805_3246669_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3246680_3247463_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3247459_3248578_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3248574_3250107_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3250147_3251155_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3251299_3252022_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3252037_3253060_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3253376_3254111_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3254195_3255941_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3255937_3256690_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3256734_3257691_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3257779_3258346_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3258353_3259214_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3259243_3259972_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3260003_3260687_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3261524_3262439_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3262503_3263412_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3263502_3264927_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3264928_3266251_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3266247_3268386_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3268463_3273584_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3273684_3273993_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3274062_3274620_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3274635_3276117_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929992.1|3278287_3279625_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3279659_3281657_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3281674_3283723_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3283853_3284720_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3284988_3285954_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3286068_3287217_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_003807462.1|3287641_3287953_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3287986_3288247_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3288396_3289530_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3289600_3290737_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3290902_3291697_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3291759_3292203_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3292318_3293269_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3293370_3293799_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3293871_3296067_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3296288_3297239_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3297198_3297723_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3297854_3298826_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3298945_3301390_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3301405_3301996_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3302239_3303190_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3303347_3304613_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3304646_3305744_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3306398_3307349_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP010840	Bordetella pertussis strain H379 chromosome, complete genome	4105330	3318636	3418749	4105330	terminase,tail,protease,transposase,tRNA	uncultured_Caudovirales_phage(14.29%)	108	NA	NA
WP_005012067.1|3318636_3319587_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3320318_3320696_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3320680_3321382_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3321525_3322218_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3322217_3323321_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3323430_3325803_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3325799_3327359_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3327383_3328181_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3328212_3329358_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3329462_3330905_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3330907_3332137_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3334274_3335225_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3336354_3336912_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3336887_3337238_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3337406_3338201_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3338197_3339247_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3339246_3339936_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3340022_3340520_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3340551_3341868_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3341884_3342859_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3342895_3343354_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3343353_3344034_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3344036_3344465_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3344517_3346248_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3346313_3346886_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3346866_3347553_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3347908_3348580_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3348908_3349130_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3349129_3349411_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3349407_3349923_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3349922_3350474_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3350452_3350695_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3350699_3351512_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3351511_3351775_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3351815_3352013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3351993_3352410_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3352414_3356371_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3356363_3356753_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3356749_3357283_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3357350_3357710_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3357719_3360332_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3360357_3360648_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3360665_3360995_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3361004_3361523_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3361777_3362278_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3362285_3362708_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3362704_3363103_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3363099_3363495_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3363494_3363695_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3363696_3364179_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3364241_3364493_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3365167_3366118_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3366546_3367149_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3367271_3367514_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3367519_3368575_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3368603_3370022_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3370024_3371302_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3371288_3371774_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3372413_3373364_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853183.1|3373381_3373603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161633094.1|3373620_3374310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3374302_3374554_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3375108_3375720_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3375791_3375998_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3376249_3377200_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3377298_3378372_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3378539_3379334_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3379373_3379898_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3379890_3381633_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3381842_3382601_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3382603_3383311_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3383327_3384209_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3384219_3384978_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3384946_3385702_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3385771_3387190_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3387211_3387862_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3387995_3388331_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3388419_3389370_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3389446_3391267_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3391271_3392345_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3392467_3393436_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3393509_3394421_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3394439_3395012_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3395092_3395641_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3395640_3397230_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3397299_3397539_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3397579_3398605_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3398670_3399852_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3399948_3400401_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3400410_3401751_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3402067_3403105_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3403486_3403846_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3403929_3404871_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3404945_3405896_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3406189_3407284_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3407365_3408247_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3408268_3409108_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3409183_3410701_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3410797_3411898_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3411914_3412337_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003814195.1|3412359_3412572_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3412618_3413539_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3413721_3414471_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3414473_3414803_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3415009_3416443_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3416454_3416838_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3416899_3417700_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3417798_3418749_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP010840	Bordetella pertussis strain H379 chromosome, complete genome	4105330	3768350	3839338	4105330	transposase	Staphylococcus_phage(15.38%)	54	NA	NA
WP_005012067.1|3768350_3769301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927254.1|3769531_3771223_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_003816027.1|3771271_3771544_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_003816026.1|3771540_3771912_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816025.1|3772007_3772142_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_010929554.1|3772547_3773957_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_010929839.1|3773959_3775069_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929838.1|3775163_3777617_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_023853625.1|3777735_3778527_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929836.1|3778646_3780074_+	amidase	NA	NA	NA	NA	NA
WP_010929835.1|3780112_3781084_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929834.1|3781502_3782666_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929833.1|3782753_3783599_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3785155_3786106_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|3786204_3787155_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818201.1|3787709_3788084_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929807.1|3788158_3789217_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|3789240_3790191_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929808.1|3793072_3794242_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_003815953.1|3794342_3795950_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
WP_010929810.1|3795996_3798018_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815955.1|3798046_3798292_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_004565905.1|3798305_3799496_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_010929811.1|3799691_3800657_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929812.1|3800679_3801819_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929813.1|3802030_3802993_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929814.1|3803116_3805141_+	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929815.1|3805337_3807581_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_003815964.1|3807859_3808318_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929816.1|3809245_3811867_-	GDYXXLXY domain-containing protein	NA	NA	NA	NA	NA
WP_010929817.1|3811930_3814558_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929818.1|3814709_3815774_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699616.1|3815773_3816544_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929819.1|3816552_3817386_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818225.1|3817398_3818178_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|3818251_3819685_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929821.1|3819712_3820471_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929822.1|3820526_3822377_-	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929823.1|3822470_3822947_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853391.1|3822963_3823884_-	bestrophin	NA	NA	NA	NA	NA
WP_003818232.1|3823990_3824491_+	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA	NA
WP_010929826.1|3824864_3825557_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_162268689.1|3825671_3825848_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3825865_3826816_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931556.1|3826812_3830586_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010931557.1|3830922_3832812_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931558.1|3832823_3833717_+	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931559.1|3833820_3834618_+	thiazole synthase	NA	NA	NA	NA	NA
WP_010931560.1|3834614_3835466_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003817656.1|3835527_3836208_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_019248789.1|3836244_3836571_+	TolC family protein	NA	NA	NA	NA	NA
WP_019247190.1|3836571_3837531_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_003815102.1|3837551_3838040_-	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_010931561.1|3838321_3839338_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
