The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP010841	Bordetella pertussis strain H380 chromosome, complete genome	4104286	27282	70036	4104286	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP010841	Bordetella pertussis strain H380 chromosome, complete genome	4104286	77634	136108	4104286	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP010841	Bordetella pertussis strain H380 chromosome, complete genome	4104286	164894	225405	4104286	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169080_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181337_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184327_188002_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188633_189056_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189083_189503_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189531_190005_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190756_193027_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193075_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194406_195357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195459_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197379_198480_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198561_198936_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198995_201860_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205636_206587_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206743_207067_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207171_208212_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208217_208997_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209364_209640_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210340_211027_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211156_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212058_212784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214276_215209_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219055_221998_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224454_225405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP010841	Bordetella pertussis strain H380 chromosome, complete genome	4104286	233337	286925	4104286	tRNA,protease,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233337_234288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235321_236272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236370_237168_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238117_238528_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240336_241380_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241550_243653_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251624_253514_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253600_254239_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254381_255767_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265574_266525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267713_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274128_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277141_278092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278538_278679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279656_280268_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280426_281281_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281300_282683_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284841_285978_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285974_286925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP010841	Bordetella pertussis strain H380 chromosome, complete genome	4104286	354918	414386	4104286	tRNA,transposase	Streptococcus_phage(50.0%)	56	NA	NA
WP_010929969.1|354918_355869_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|355967_356918_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929759.1|357029_357752_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815420.1|357850_358594_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010929760.1|358824_360333_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815418.1|360452_361184_+	iron-containing redox enzyme family protein	NA	NA	NA	NA	NA
WP_010929761.1|361228_362689_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929762.1|362713_363193_+	heme-binding protein	NA	NA	NA	NA	NA
WP_003817846.1|363211_364222_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929763.1|364436_365177_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023997839.1|365383_366394_+	beta-propeller fold lactonase family protein	NA	NA	NA	NA	NA
WP_010929765.1|366353_367304_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929766.1|368352_368991_+	trimeric intracellular cation channel family protein	NA	NA	NA	NA	NA
WP_010929767.1|369027_370371_-	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_010929768.1|370793_371582_-	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	25.7	1.2e-19
WP_010929769.1|371719_372394_+	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010929770.1|372507_373962_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_010929771.1|373964_375503_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_010929772.1|375505_375814_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_003815204.1|376044_377088_+	rod shape-determining protein	NA	NA	NA	NA	NA
WP_010929773.1|377176_378061_+	rod shape-determining protein MreC	NA	NA	NA	NA	NA
WP_003815202.1|378047_378611_+	rod shape-determining protein MreD	NA	NA	NA	NA	NA
WP_003815201.1|378624_380577_+	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_003815198.1|380573_381710_+	rod shape-determining protein RodA	NA	NA	NA	NA	NA
WP_010929775.1|381735_382791_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010929776.1|382801_384295_-	DASS family sodium-coupled anion symporter	NA	NA	NA	NA	NA
WP_010927138.1|384507_385083_-	nucleoid occlusion factor SlmA	NA	NA	NA	NA	NA
WP_010929777.1|385132_385879_-	pyrimidine 5'-nucleotidase	NA	NA	NA	NA	NA
WP_010929778.1|385878_386781_-	acetylglutamate kinase	NA	NA	NA	NA	NA
WP_010929779.1|387042_387831_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003815191.1|387971_388463_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_003815190.1|388459_389203_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_033446211.1|389199_389793_-	phosphoheptose isomerase	NA	A0A067XQR2	Caulobacter_phage	34.8	5.6e-17
WP_100208326.1|389801_390278_-	YraN family protein	NA	NA	NA	NA	NA
WP_010929780.1|390402_391341_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	NA	NA	NA	NA
WP_010929781.1|391337_391910_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	42.5	3.2e-25
WP_005012067.1|391906_392857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392993_393911_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393907_394156_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394152_395358_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395430_396426_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396448_397669_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397665_398310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400040_400850_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401154_402108_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402206_403190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403116_403818_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403866_404637_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404633_405812_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405979_407686_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407682_408579_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408619_410209_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|410258_411251_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411319_411919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412379_413360_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_077598850.1|413435_414386_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP010841	Bordetella pertussis strain H380 chromosome, complete genome	4104286	469550	586396	4104286	tRNA,transposase	Acinetobacter_phage(22.22%)	101	NA	NA
WP_010929956.1|469550_470501_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|471223_472498_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|472584_473667_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|473677_474490_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|474526_474853_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|474857_475418_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|475658_476651_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|476669_477665_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|477680_479057_+	FAD binding domain-containing protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|479049_481431_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|481447_481837_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|481963_482194_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|482298_483249_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|483347_484298_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|484294_485167_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|486097_487384_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|487437_488364_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|488382_488838_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_003815177.1|489689_490481_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|490512_491133_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|491129_491759_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|491771_492380_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|492376_493366_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|493471_494686_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|496637_497588_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|499021_500308_+	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929971.1|500473_500782_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_003807035.1|500782_501448_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_003807038.1|501488_503279_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|503391_504252_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_010929973.1|504248_505454_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|505450_506335_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|507851_508286_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|508248_509247_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|509358_510504_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|510578_511907_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|511940_512531_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|512820_513615_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|514784_515519_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|515525_516392_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|516399_518175_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|518217_518715_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|519011_519962_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|520060_521011_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|521351_522302_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|524625_525774_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003817794.1|525818_526481_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|526594_527587_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|527583_528321_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815315.1|528400_529222_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|529310_530174_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|530300_530537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|532511_533546_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003817805.1|533604_534582_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|534589_535510_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|535506_537207_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|537209_538115_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|538158_539292_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|539420_540371_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|540469_542539_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|542581_544684_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|544990_546067_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|546142_547027_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|547209_547632_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|547641_549042_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|549084_549990_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|550088_551630_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|551664_552204_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|552216_552687_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|552824_553067_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|553183_554065_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|554137_554458_-	ATP synthase subunit I	NA	NA	NA	NA	NA
WP_023852617.1|555309_556260_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|557583_558360_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|558394_560167_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|560168_561071_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|561195_561555_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|561586_562549_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|562647_563598_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|563610_564546_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|564605_565445_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|565441_566611_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|566607_567897_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|567939_568314_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|568419_569157_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|569164_569869_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|570132_571653_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|571708_572272_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|572290_573322_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|573318_574107_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|574127_574286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|574282_575272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|577028_577979_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|579201_580104_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|580105_580960_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|581006_582116_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|582126_582645_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|582674_583307_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|583378_584038_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|584034_585255_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|585523_586396_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 7
NZ_CP010841	Bordetella pertussis strain H380 chromosome, complete genome	4104286	590810	654643	4104286	tRNA,transposase	Pandoravirus(12.5%)	47	NA	NA
WP_010931363.1|590810_591827_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|592098_592725_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|592780_593908_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|593913_599631_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|600198_601143_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|601331_602267_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|602384_603956_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|604035_605244_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|605741_606659_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|609019_609241_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|609571_610588_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|610672_610924_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|610927_611743_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|611855_612734_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|612845_614609_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|614724_616065_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|617134_618559_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|618558_619260_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|620764_621715_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|621810_622782_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|622786_623467_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|623604_623997_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|624104_625121_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|625360_626146_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|626240_627650_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|627660_628461_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|628481_629252_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|629294_629762_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|629758_630709_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|632657_633536_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|634462_637441_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|637794_638745_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|638741_639830_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|639865_640729_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|641868_642258_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|642261_643044_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|643077_643863_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|644138_645278_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|645274_646066_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|646062_646812_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|646808_647681_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|647680_648682_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|648678_649842_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|649867_650551_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|650504_651839_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|651831_652926_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|653692_654643_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP010841	Bordetella pertussis strain H380 chromosome, complete genome	4104286	673554	750863	4104286	tRNA,protease,integrase,transposase	Bacillus_phage(20.0%)	57	720691:720709	740579:740597
WP_010929956.1|673554_674505_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|674603_676079_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|677666_678554_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|678556_679498_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|679543_681109_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|682886_684212_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|684394_685852_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|685815_686313_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|686343_687315_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_003808444.1|687367_687805_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|687928_688597_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|689325_690429_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_171024626.1|690531_691809_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|691820_692846_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|692847_694218_+	polysaccharide biosynthesis C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931324.1|694218_695355_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|695401_697327_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|697323_698445_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|698441_699596_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|699592_700723_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|700730_702296_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|702302_703685_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|703963_704575_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|704666_706082_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|706099_706810_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|706806_708129_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|708208_710170_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|710295_711609_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|711717_713016_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|713198_714107_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|714116_714326_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|714337_716017_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|716118_717072_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|717162_717990_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|717988_719875_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|719871_720471_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|720519_721419_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
720691:720709	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|721627_722578_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|722700_723315_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|723443_724040_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|724036_724819_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|724891_725983_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|726262_727390_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|727731_728778_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|728925_732045_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|732046_734998_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|735013_736225_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_005013747.1|736408_737359_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|737375_737870_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|737873_738131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|738674_739586_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|739667_739952_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|740735_741686_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740579:740597	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|742104_744669_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|744713_746567_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|746899_748471_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|749912_750863_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP010841	Bordetella pertussis strain H380 chromosome, complete genome	4104286	997846	1100239	4104286	tRNA,transposase	Bacillus_virus(27.27%)	93	NA	NA
WP_003813026.1|997846_998962_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|999062_999881_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|999978_1000590_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|1000749_1002126_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1002188_1002647_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1002731_1003427_-	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA	NA
WP_003813010.1|1003488_1003770_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1004332_1005085_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1005129_1006206_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1006202_1007153_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1007255_1007918_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1008012_1008183_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1008535_1009537_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1009539_1010736_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1010756_1011560_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1011640_1011937_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1011967_1012531_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1012571_1013429_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1013436_1014186_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1014207_1015080_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1015108_1015888_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1015921_1016719_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1019373_1019766_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1019759_1020620_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1020623_1021586_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1022362_1023052_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1023912_1024863_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1025212_1026082_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1026152_1026848_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1026837_1027347_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1027343_1028564_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1028511_1029414_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1030300_1031587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1031625_1032999_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1033037_1033739_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1034037_1035027_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1035127_1035589_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1035604_1036153_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1036294_1037770_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1037875_1038967_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1038970_1039753_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1039762_1040551_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1041676_1042111_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1042107_1043118_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1043161_1044088_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1044374_1044743_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1044959_1045910_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1045954_1048381_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1048429_1049122_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1049194_1050394_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1050411_1051317_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1051432_1052362_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1052387_1053734_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1053761_1054511_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1054524_1055307_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1055499_1056450_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1056511_1057621_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1058133_1058970_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1059039_1060005_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1060001_1060952_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1061337_1061880_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1062915_1063866_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1064107_1064476_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1064521_1065646_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1066780_1067533_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1067624_1068245_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1068348_1069299_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1069295_1071404_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1071548_1072208_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1072239_1072704_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1072979_1073165_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1073216_1073969_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1073975_1075238_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1075279_1076518_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1077595_1078723_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1078733_1079561_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1079547_1080414_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1081780_1082185_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1082276_1083227_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|1083596_1084508_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1084522_1085233_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1085229_1086474_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1086475_1086910_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1086938_1087244_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1087342_1088293_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1088349_1089504_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1089578_1090529_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1091060_1091858_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1091905_1092559_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1092515_1093604_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1093768_1095994_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1098271_1099168_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1099288_1100239_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP010841	Bordetella pertussis strain H380 chromosome, complete genome	4104286	1130624	1200546	4104286	protease,transposase	uncultured_Mediterranean_phage(25.0%)	51	NA	NA
WP_005012808.1|1130624_1131575_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1131631_1132744_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1135127_1136078_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1136668_1137445_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1137562_1137826_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1137926_1138931_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1139131_1140733_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1140758_1141517_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1141608_1142265_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1142355_1143120_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1143129_1143318_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1143373_1144417_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1144413_1144827_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1144823_1145444_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010929591.1|1145724_1146675_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1146842_1148234_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1148306_1148885_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1149001_1150399_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1150514_1151720_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1151819_1152338_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1152432_1152678_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1152905_1153220_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1153309_1158499_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1158495_1160664_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1160719_1163035_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1163039_1164359_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1164377_1166051_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1166055_1166724_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1166880_1170702_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_005015810.1|1171032_1171983_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1172004_1173150_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1173298_1174228_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1174224_1175313_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1175309_1176113_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1176109_1176841_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1176898_1178188_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1178284_1178887_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1183440_1183779_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1184486_1184753_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1186459_1187410_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1187406_1188738_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1189998_1191999_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1191991_1192633_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1192629_1193037_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1193033_1193834_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1193908_1194613_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1194644_1195439_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931070.1|1195435_1196386_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1196484_1196919_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1197001_1199338_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1199529_1200546_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP010841	Bordetella pertussis strain H380 chromosome, complete genome	4104286	1247941	1328816	4104286	tRNA,transposase	Bacillus_virus(25.0%)	58	NA	NA
WP_010927663.1|1247941_1248892_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1248888_1249839_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1250099_1251128_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1251207_1252506_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1252502_1253084_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1253396_1257443_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1257683_1265345_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1265341_1266292_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1267431_1267905_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1268044_1268665_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|1268800_1269601_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1269655_1270747_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1270768_1271212_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1271240_1271873_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1271983_1272400_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1272392_1273085_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1273191_1273566_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931058.1|1273642_1274452_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1274547_1275492_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1275530_1276502_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1276592_1277030_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1277088_1277970_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1278973_1279834_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1279866_1281249_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1281245_1282265_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1282637_1283132_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1283139_1283880_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1283960_1285565_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1285604_1286393_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931048.1|1287595_1288684_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931047.1|1289564_1290377_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1290389_1290698_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1290815_1292546_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|1292547_1293693_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931044.1|1293822_1294491_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1294612_1295080_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1295215_1296598_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1296594_1297719_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1297715_1300352_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1300767_1301718_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1305464_1306076_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1306298_1307759_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1307855_1309448_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1309801_1310059_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1310060_1311401_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1311496_1312186_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1312198_1313629_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1315353_1316175_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1316185_1317757_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1317785_1318763_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1318789_1319593_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1319589_1320384_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1320391_1321627_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1321619_1322054_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1322803_1323754_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1324375_1326103_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1326214_1327573_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1327865_1328816_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP010841	Bordetella pertussis strain H380 chromosome, complete genome	4104286	1413470	1469876	4104286	transposase	Enterococcus_phage(16.67%)	50	NA	NA
WP_010930208.1|1413470_1414421_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930975.1|1414423_1415377_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247213.1|1415404_1416256_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	37.6	2.1e-33
WP_010929099.1|1416261_1417290_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010930973.1|1417286_1418330_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930972.1|1418397_1419423_-	dipeptidase	NA	NA	NA	NA	NA
WP_010930971.1|1419704_1420958_+	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA	NA
WP_003821030.1|1420968_1421241_+	sarcosine oxidase subunit delta	NA	NA	NA	NA	NA
WP_010930970.1|1421237_1424177_+	sarcosine oxidase subunit alpha family protein	NA	NA	NA	NA	NA
WP_010930969.1|1424184_1424784_+	sarcosine oxidase subunit gamma	NA	NA	NA	NA	NA
WP_010929093.1|1424784_1425633_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_019248827.1|1425670_1426657_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930967.1|1426672_1428109_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010930966.1|1428121_1428913_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930965.1|1429231_1430287_+	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA	NA
WP_010930964.1|1430323_1431133_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA	NA
WP_010930963.1|1431133_1431682_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_003814098.1|1431832_1432252_+	ferric iron uptake transcriptional regulator	NA	NA	NA	NA	NA
WP_010930962.1|1432326_1433988_-	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_010930961.1|1434003_1434903_-	NAD kinase	NA	NA	NA	NA	NA
WP_003814090.1|1435017_1436022_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
WP_023853055.1|1436079_1437168_+	ferrochelatase	NA	NA	NA	NA	NA
WP_023853049.1|1437249_1437492_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814083.1|1437633_1438188_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_010926991.1|1438195_1438576_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010930959.1|1438666_1440592_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	50.3	1.1e-146
WP_010929084.1|1440692_1441826_+	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	60.8	3.9e-19
WP_010930957.1|1441994_1444745_-	insulinase family protein	NA	A0A2K9LA15	Tupanvirus	28.1	1.5e-19
WP_003814072.1|1445077_1445452_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930956.1|1445489_1446032_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930955.1|1446035_1447208_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_003814066.1|1447229_1448117_-	MoxR family ATPase	NA	NA	NA	NA	NA
WP_005013747.1|1448209_1449160_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1449326_1449680_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1449692_1450055_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1450096_1450522_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1450724_1451981_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1452179_1453160_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1453309_1454551_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1454649_1455600_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1455698_1456649_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1456657_1457353_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1460174_1460774_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1460784_1462950_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1462973_1464758_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1464757_1464847_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1465541_1465814_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1465813_1467880_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1467876_1468827_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1468925_1469876_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP010841	Bordetella pertussis strain H380 chromosome, complete genome	4104286	1546384	1614469	4104286	tRNA,transposase	Streptococcus_virus(11.11%)	60	NA	NA
WP_010930416.1|1546384_1546873_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1546990_1547569_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1547674_1548043_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1548141_1549092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1549098_1550211_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1550897_1552100_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1552135_1552282_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1552303_1554964_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1554976_1558381_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1559048_1561274_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1561320_1561647_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1561697_1562306_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_010931070.1|1562404_1563355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1563424_1564189_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1564185_1564785_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1564888_1565740_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1565799_1566426_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1566422_1567373_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1567471_1568584_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1568573_1569575_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1569680_1571192_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1571188_1572493_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1572604_1573165_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1573432_1573987_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1574442_1574658_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1574912_1577510_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1577506_1578694_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_062826574.1|1578962_1579187_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248658.1|1579351_1579966_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930437.1|1580054_1581182_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1581193_1582099_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1582991_1583942_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1584123_1584876_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1584944_1585604_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1585600_1586329_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1586341_1588621_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1588645_1588849_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1588890_1589523_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1589658_1590576_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1590572_1591286_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1591523_1592294_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1592298_1592898_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1593142_1594633_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1594691_1594976_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1595113_1595269_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1595541_1596468_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1596604_1597345_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1597511_1598888_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1599069_1599975_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1601626_1603429_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1603555_1604197_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1604295_1605246_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1605267_1606488_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1606673_1608086_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1608149_1609217_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1609216_1610704_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1610713_1611658_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1611817_1612516_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1612593_1613499_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1613518_1614469_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP010841	Bordetella pertussis strain H380 chromosome, complete genome	4104286	1650418	1706009	4104286	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1650418_1651369_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1651427_1652201_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1652193_1653750_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1653746_1654697_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1656023_1656626_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1656865_1657567_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1657560_1658343_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1658527_1659478_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1659576_1660314_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1660503_1661262_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1661308_1662298_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1662475_1663444_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1664983_1665952_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1665960_1666902_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1667375_1668386_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1668376_1669891_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1669887_1671234_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1671236_1672271_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1672320_1673946_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1674498_1675449_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1675553_1676501_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1676554_1678369_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1678361_1679036_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1679165_1682240_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1682253_1682553_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1682867_1683491_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1683734_1684604_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1684581_1685526_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1685611_1686538_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1686650_1687430_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1687420_1688617_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1688647_1689598_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1689819_1690509_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019249354.1|1690573_1691329_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1691380_1692373_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1692382_1693336_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1693451_1694414_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1695815_1696244_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1696240_1697191_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1697484_1698222_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1698645_1699833_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1699836_1700217_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1701936_1702908_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1702921_1703635_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1703639_1704557_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1704663_1704960_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1705058_1706009_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP010841	Bordetella pertussis strain H380 chromosome, complete genome	4104286	1938770	2070363	4104286	tRNA,transposase	uncultured_Caudovirales_phage(16.67%)	112	NA	NA
WP_003818515.1|1938770_1941428_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1941505_1942708_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1942704_1943217_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1943339_1943777_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1944053_1945004_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1945102_1946053_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1946306_1948112_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|1948225_1948393_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1948456_1948693_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1949061_1950261_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1951776_1952727_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1953178_1954180_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1954352_1955210_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1955206_1956469_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1956569_1956944_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|1957016_1958204_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1958288_1959059_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1959172_1959937_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1959887_1961189_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|1961185_1961992_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|1963736_1964708_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1964864_1965377_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1965535_1966510_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1967510_1968305_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1968330_1969137_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1969247_1969838_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1969848_1971027_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1971129_1971504_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1971756_1973088_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1973154_1976385_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1977875_1978622_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1978706_1979168_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1979205_1980264_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1980226_1982056_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1982095_1982668_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1984092_1984914_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1985232_1986555_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1986914_1987550_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1987509_1988460_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1989330_1990203_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1990280_1991420_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1991778_1993035_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1993040_1993568_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1993572_1994391_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1994390_1995113_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1995134_1995449_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1995466_1996615_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1996645_1997521_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1997517_1998837_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1998909_2000106_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2000116_2001604_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2004198_2005098_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2005235_2006201_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|2006299_2007250_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2007348_2008299_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2008520_2009471_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812024.1|2009467_2009770_-	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_003812026.1|2009929_2010334_+	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_010930743.1|2010326_2011553_+	NnrS family protein	NA	NA	NA	NA	NA
WP_003812030.1|2011549_2011996_+	membrane protein	NA	NA	NA	NA	NA
WP_003812032.1|2012065_2012848_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_010930744.1|2012889_2014395_+	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247851.1|2014680_2015514_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930745.1|2016951_2017773_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930746.1|2017791_2018646_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_003812044.1|2018649_2019621_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247855.1|2020305_2020482_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|2020967_2021918_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2023055_2023352_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2023526_2024879_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930525.1|2025021_2026038_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2028017_2029031_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2029117_2030023_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2030179_2030524_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2030681_2031140_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2031153_2033370_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2033366_2034428_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2034456_2035431_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2035382_2036201_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2036213_2036822_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2036996_2037392_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2037410_2038850_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2038878_2039226_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2039244_2040195_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2040847_2041798_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2041881_2043699_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2043772_2044420_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2044432_2045362_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2045531_2045996_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2046243_2046924_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2046972_2048664_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2048679_2049231_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2049227_2049599_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2049711_2050548_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2050558_2051083_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2051180_2051360_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2051489_2052464_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2052594_2052951_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2052940_2053816_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2053914_2054799_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2054820_2056116_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2057064_2057715_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2057802_2059323_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2059580_2061446_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2062491_2063442_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2063459_2063600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2064414_2064774_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2064761_2066198_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2066194_2066848_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2066844_2068038_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2068141_2069416_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2069412_2070363_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP010841	Bordetella pertussis strain H380 chromosome, complete genome	4104286	2081567	2122258	4104286	tRNA,protease,transposase	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2081567_2082518_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2082616_2083567_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2083526_2083940_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2084224_2084524_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2084933_2087216_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2087681_2087876_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2087901_2089932_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2089951_2090164_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2090441_2090981_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2091094_2092390_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2092466_2093624_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2093807_2094707_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2094725_2096030_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2095995_2097102_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2097189_2097426_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2097564_2098635_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2098638_2099994_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2100020_2101181_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2101183_2101822_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2101823_2103110_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2103168_2104464_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2104470_2104977_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2104973_2106122_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2106149_2106575_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2106897_2109780_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2109872_2110628_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2111393_2112743_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2112841_2113792_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2113890_2114841_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2114914_2115388_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2115413_2116622_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2116618_2117392_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2117391_2118015_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2118180_2118441_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2118744_2119326_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2119392_2119647_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2119633_2122258_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 18
NZ_CP010841	Bordetella pertussis strain H380 chromosome, complete genome	4104286	2150041	2215590	4104286	tRNA,protease,transposase	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2150041_2150992_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2151192_2152002_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2152126_2153077_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2153073_2153967_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2154091_2154286_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2154285_2154627_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2154636_2156499_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2156628_2157141_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2157143_2157467_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2157468_2157879_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2157916_2159128_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2159145_2159658_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2159873_2160365_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2160617_2162654_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2162731_2163934_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2164062_2164713_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2166270_2167221_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2167791_2168004_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2168021_2168753_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2168787_2169429_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2169421_2170090_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2172302_2173079_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2173100_2174258_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2174254_2174686_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2174682_2175486_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2175499_2175901_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2175967_2176939_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2177004_2178228_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2178455_2179406_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2179529_2181983_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2182171_2183476_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2183580_2184234_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2184236_2185547_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2185743_2186304_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2186415_2186616_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2186961_2187528_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2187611_2187815_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2188121_2188442_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2188483_2188765_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2188839_2190096_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2190478_2190808_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2192378_2193200_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2193199_2194339_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2194345_2195242_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2195238_2197164_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2197523_2200136_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2200188_2202489_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2202485_2203694_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2203955_2204330_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2204326_2205277_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2205375_2207370_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2207429_2208395_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2208384_2211246_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2211248_2211755_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2211859_2213068_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2213069_2214008_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2214169_2214643_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2214639_2215590_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP010841	Bordetella pertussis strain H380 chromosome, complete genome	4104286	2508188	2566431	4104286	tRNA,transposase	Planktothrix_phage(28.57%)	52	NA	NA
WP_005012067.1|2508188_2509139_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2509618_2510275_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2510289_2511957_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2511959_2512589_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2512800_2513895_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2514039_2514852_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2514855_2516559_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2516609_2517740_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2517926_2519003_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2519084_2519735_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2519749_2521153_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2521436_2522255_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2522251_2522956_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2523855_2524971_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2525004_2525379_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2525401_2526559_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2526571_2526805_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2527439_2530409_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2530423_2530633_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2530784_2531414_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2531410_2533501_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2533524_2534205_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2534201_2534762_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2534768_2535866_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2536018_2536612_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2536608_2537901_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2537914_2538457_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2538466_2539303_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2539336_2540398_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2540439_2541492_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2541507_2541810_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2541951_2542902_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2543080_2544775_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2544771_2545857_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2545904_2546804_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2546814_2547459_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2548480_2551723_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2551733_2552888_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2553114_2554077_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2554175_2555126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2555224_2556175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811741.1|2556932_2557370_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2557415_2558309_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2558356_2559529_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2559525_2560680_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2560876_2561227_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2561216_2561651_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2561667_2562618_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2562765_2563233_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2563213_2564371_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2564436_2565363_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2565480_2566431_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP010841	Bordetella pertussis strain H380 chromosome, complete genome	4104286	2608710	2675210	4104286	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2608710_2609661_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2610030_2610603_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2610605_2611616_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2611608_2612109_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2612119_2612461_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2612472_2613264_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2613280_2613550_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2613572_2614361_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2614407_2615424_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2615640_2617083_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2617261_2618881_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2619001_2620822_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2620900_2622433_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2622466_2624113_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2624182_2625205_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2625222_2626356_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2626358_2627048_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2627047_2627833_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2627876_2628641_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2628679_2630101_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2630166_2630871_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2630918_2631338_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2631350_2631758_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2631941_2632652_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2632778_2633069_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2633086_2633569_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2638074_2639229_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2639534_2640551_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2640797_2641586_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2641652_2642333_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2642329_2643100_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2643198_2644149_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2644204_2645122_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2645132_2646311_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2646330_2647326_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2648914_2649523_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2649510_2650551_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2650568_2651531_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2651527_2652721_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2652717_2653515_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2653540_2654527_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2654545_2656585_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2656786_2657467_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2657480_2658392_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2658388_2658967_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2659105_2660011_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2660018_2663438_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2663425_2666026_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2666981_2667614_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2668007_2668766_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2668762_2669965_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2670152_2671103_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2672010_2673156_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2673142_2673898_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2674014_2674194_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|2674259_2675210_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP010841	Bordetella pertussis strain H380 chromosome, complete genome	4104286	2874598	2947923	4104286	tRNA,protease,transposase	Catovirus(22.22%)	52	NA	NA
WP_010930211.1|2874598_2875954_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2877432_2878155_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2878209_2879193_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2879322_2880273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2880269_2881172_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2881259_2882018_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2882030_2883122_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2883219_2884647_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2884876_2886091_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2886136_2889007_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2891417_2891906_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2892031_2894728_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2894882_2897165_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2897338_2897962_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2898060_2899011_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2899057_2899612_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2899679_2900525_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2900594_2901563_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023995083.1|2901562_2902426_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2905258_2909185_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2909920_2913151_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2913432_2914260_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2914293_2914989_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2914981_2916262_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2916271_2917249_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2917230_2918931_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2919033_2920137_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2920167_2920923_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2920929_2922450_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2922492_2922795_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2922791_2923424_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2923502_2925368_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2925364_2926159_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2926187_2927303_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2928207_2929086_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2929085_2929910_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2930077_2931028_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2931240_2934090_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2934071_2934800_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2934940_2936404_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2936400_2936772_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2936789_2938103_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2938139_2938598_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2938710_2939661_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2939657_2940671_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2940810_2941797_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2942155_2942863_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2943443_2944394_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2944545_2945148_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2945166_2945799_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2945843_2946095_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2946036_2947923_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
>prophage 22
NZ_CP010841	Bordetella pertussis strain H380 chromosome, complete genome	4104286	2959648	3009260	4104286	tRNA,holin,transposase	uncultured_Mediterranean_phage(50.0%)	42	NA	NA
WP_005013747.1|2959648_2960599_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2960625_2961090_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2962296_2964585_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2964701_2965574_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2965616_2966771_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2966805_2967636_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2967719_2969264_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2969306_2969666_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2969667_2970081_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2970121_2970439_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2970523_2971240_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2971503_2972925_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2972991_2975739_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|2976071_2977088_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2977423_2978065_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2978155_2979592_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2979749_2980823_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2980819_2981956_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2982099_2982444_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2982510_2984391_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|2984440_2985376_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930525.1|2985708_2986725_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2987662_2989090_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2989086_2990109_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2990098_2990572_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2990712_2991600_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2991596_2993240_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|2993236_2994286_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|2995074_2996091_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2996190_2996823_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2996831_2997221_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2997273_2998326_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2999189_3000896_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|3000969_3001470_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3001484_3003542_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3003568_3003862_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3003963_3004911_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3004923_3005799_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3005919_3006480_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3006514_3006838_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3007273_3008011_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3008309_3009260_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP010841	Bordetella pertussis strain H380 chromosome, complete genome	4104286	3030211	3102704	4104286	transposase	Bacillus_virus(16.67%)	58	NA	NA
WP_010929584.1|3030211_3031162_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3031204_3032380_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3032601_3034392_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_193394813.1|3034404_3035673_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3036077_3038783_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3039075_3040830_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3040826_3041453_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3041449_3042301_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3042376_3044491_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3044677_3045292_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3045437_3045689_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3045758_3047141_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3047137_3050317_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3051124_3052042_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3052093_3052825_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3052884_3053457_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3054965_3055982_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3056119_3057169_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3057273_3058224_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3058319_3059045_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3059255_3059636_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3059941_3060814_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3060821_3061202_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3061355_3062630_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3064117_3065026_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3065823_3066888_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3068724_3069726_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3069948_3070590_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3070672_3072499_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3072742_3073672_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3073671_3074421_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3074492_3075407_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3075426_3076572_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3076632_3077544_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3077624_3078575_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3078673_3079258_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3079292_3080282_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3080278_3081220_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3081216_3082437_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3082479_3082794_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3082985_3083345_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3083346_3085062_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3085249_3085921_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3085935_3087264_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3087260_3088160_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3088246_3089332_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|3089324_3090458_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|3090457_3093139_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3093509_3094091_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3094216_3094942_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3094938_3095616_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3095831_3097013_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3097785_3097968_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3097997_3098948_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3099077_3099470_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3099746_3100658_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3100782_3101757_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3101753_3102704_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP010841	Bordetella pertussis strain H380 chromosome, complete genome	4104286	3116211	3169729	4104286	holin,transposase	Bacillus_phage(33.33%)	44	NA	NA
WP_010930066.1|3116211_3117162_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3117274_3117526_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3118031_3119150_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3119269_3119482_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3119641_3119863_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3119915_3120866_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3122042_3123413_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3123445_3124237_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3124249_3125305_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3125330_3126206_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3126311_3126560_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3126594_3128049_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3128045_3128567_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3128595_3129948_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3130171_3133060_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3135204_3136506_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3136520_3137237_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3137518_3138199_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3138210_3138378_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3138486_3138633_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3138726_3139386_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3139784_3141617_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3141613_3142564_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3143727_3145443_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3145453_3145945_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3146017_3147034_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3147201_3147981_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3147999_3148527_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3148820_3149090_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3149180_3151340_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3151460_3152180_+	lipoprotein	NA	NA	NA	NA	NA
WP_062826579.1|3152176_3153127_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3153267_3154485_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3154478_3155090_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3155723_3156701_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3156844_3157591_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3157612_3158059_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3158846_3161078_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_003813993.1|3161100_3161901_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|3162182_3163415_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|3163525_3164515_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3164545_3165934_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|3167532_3168516_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|3168712_3169729_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP010841	Bordetella pertussis strain H380 chromosome, complete genome	4104286	3234187	3307349	4104286	transposase	Klosneuvirus(16.67%)	57	NA	NA
WP_041337087.1|3234187_3235138_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3235134_3236154_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3236163_3238872_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3239019_3239676_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3239774_3240725_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3240872_3241766_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3241965_3243660_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3243694_3244621_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3244689_3245787_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3245805_3246669_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3246680_3247463_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3247459_3248578_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3248574_3250107_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3250147_3251155_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3251299_3252022_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3252037_3253060_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3253376_3254111_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3254195_3255941_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3255937_3256690_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3256734_3257691_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3257779_3258346_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3258353_3259214_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3259243_3259972_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3260003_3260687_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3261524_3262439_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3262503_3263412_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3263502_3264927_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3264928_3266251_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3266247_3268386_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3268463_3273584_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3273684_3273993_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3274062_3274620_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3274635_3276117_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929992.1|3278287_3279625_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3279659_3281657_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3281674_3283723_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3283853_3284720_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3284988_3285954_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3286068_3287217_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_003807462.1|3287641_3287953_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3287986_3288247_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3288396_3289530_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3289600_3290737_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3290902_3291697_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3291759_3292203_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3292318_3293269_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3293370_3293799_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3293871_3296067_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3296288_3297239_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3297198_3297723_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3297854_3298826_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3298945_3301390_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3301405_3301996_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3302239_3303190_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3303347_3304613_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3304646_3305744_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3306398_3307349_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP010841	Bordetella pertussis strain H380 chromosome, complete genome	4104286	3318636	3418749	4104286	tRNA,protease,transposase,tail,terminase	uncultured_Caudovirales_phage(14.29%)	107	NA	NA
WP_005012067.1|3318636_3319587_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3320318_3320696_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3320680_3321382_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3321525_3322218_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3322217_3323321_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3323430_3325803_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3325799_3327359_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3327383_3328181_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3328212_3329358_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3329462_3330905_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3330907_3332137_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3334274_3335225_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3336354_3336912_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3336887_3337238_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3337406_3338201_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3338197_3339247_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3339246_3339936_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3340022_3340520_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3340551_3341868_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3341884_3342859_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3342895_3343354_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3343353_3344034_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3344036_3344465_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3344517_3346248_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3346313_3346886_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3346866_3347553_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3347908_3348580_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3348908_3349130_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3349129_3349411_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3349407_3349923_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3349922_3350474_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3350452_3350695_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3350699_3351512_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3351511_3351775_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3351815_3352013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3351993_3352410_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3352414_3356371_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3356363_3356753_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3356749_3357283_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3357350_3357710_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3357719_3360332_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3360357_3360648_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3360665_3360995_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3361004_3361523_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3361777_3362278_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3362285_3362708_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3362704_3363103_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3363099_3363495_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3363494_3363695_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3363696_3364179_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3364241_3364493_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3365167_3366118_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3366546_3367149_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3367271_3367514_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3367519_3368575_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3368603_3370022_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3370024_3371302_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3371288_3371774_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3372413_3373364_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3373620_3374310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3374302_3374554_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3375108_3375720_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3375791_3375998_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3376249_3377200_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3377298_3378372_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3378539_3379334_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3379373_3379898_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3379890_3381633_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3381842_3382601_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3382603_3383311_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3383327_3384209_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3384219_3384978_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3384946_3385702_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3385771_3387190_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3387211_3387862_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3387995_3388331_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3388419_3389370_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3389446_3391267_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3391271_3392345_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3392467_3393436_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3393509_3394421_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3394439_3395012_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3395092_3395641_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3395640_3397230_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3397299_3397539_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3397579_3398605_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3398670_3399852_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3399948_3400401_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3400410_3401751_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3402067_3403105_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3403486_3403846_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3403929_3404871_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3404945_3405896_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3406189_3407284_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3407365_3408247_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3408268_3409108_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3409183_3410701_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3410797_3411898_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3411914_3412337_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003814195.1|3412359_3412572_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3412618_3413539_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3413721_3414471_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3414473_3414803_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3415009_3416443_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3416454_3416838_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3416899_3417700_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3417798_3418749_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP010841	Bordetella pertussis strain H380 chromosome, complete genome	4104286	3704315	3837241	4104286	tRNA,integrase,transposase	uncultured_Mediterranean_phage(10.34%)	114	3748958:3748975	3793598:3793615
WP_005013747.1|3704315_3705266_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929878.1|3705262_3705898_-	LysE family transporter	NA	NA	NA	NA	NA
WP_003818466.1|3706027_3706927_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
WP_003807278.1|3707022_3707514_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
WP_010929877.1|3707560_3708526_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929876.1|3709659_3710901_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
WP_003807287.1|3711014_3712031_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
WP_010929875.1|3712065_3712542_-	membrane protein	NA	NA	NA	NA	NA
WP_003807291.1|3712684_3713593_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_010929874.1|3713706_3714819_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
WP_023853429.1|3714919_3715405_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818477.1|3715541_3716792_+	kynureninase	NA	NA	NA	NA	NA
WP_003807300.1|3716893_3717406_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
WP_005013747.1|3717504_3718455_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929873.1|3718520_3719459_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
WP_010929872.1|3719481_3720108_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_003818481.1|3720104_3720761_-	HAD hydrolase-like protein	NA	NA	NA	NA	NA
WP_010929871.1|3720757_3721360_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929870.1|3721366_3721954_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.1e-07
WP_010929869.1|3722134_3722704_+	bacterioferritin	NA	NA	NA	NA	NA
WP_003807313.1|3722774_3724094_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_003807315.1|3724200_3724392_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010929868.1|3724643_3725933_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929867.1|3726087_3727083_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807322.1|3727167_3727842_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3727838_3728789_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816336.1|3728950_3730192_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
WP_010929866.1|3730188_3731133_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
WP_005012067.1|3731251_3732202_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853484.1|3732161_3733091_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807759.1|3733144_3733480_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929865.1|3733524_3734289_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929864.1|3734312_3735053_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929863.1|3735060_3736614_-	acyl--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	1.5e-13
WP_010929862.1|3736648_3737626_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023853476.1|3737898_3738480_-	ureidoglycolate lyase	NA	NA	NA	NA	NA
WP_094145972.1|3738531_3745434_-	autotransporter BatB	NA	NA	NA	NA	NA
WP_003807750.1|3745880_3746012_-	entericidin A/B family lipoprotein	NA	NA	NA	NA	NA
WP_010929858.1|3746277_3746484_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
WP_010929857.1|3747488_3748148_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010929856.1|3748175_3749321_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
3748958:3748975	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_003807743.1|3749461_3749797_+	YegP family protein	NA	NA	NA	NA	NA
WP_010929855.1|3749871_3750732_-	hypothetical protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
WP_010929854.1|3750995_3751697_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019248860.1|3751866_3752262_+	RidA family protein	NA	NA	NA	NA	NA
WP_005012067.1|3752371_3753322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929852.1|3753332_3753974_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926414.1|3754140_3754383_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929851.1|3754481_3755432_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929850.1|3755467_3755935_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
WP_010926411.1|3756168_3756546_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926410.1|3756542_3756725_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929849.1|3756728_3757715_+	recombinase RecT	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
WP_010929848.1|3757711_3758359_+	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
WP_010929847.1|3758416_3758944_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247983.1|3758980_3760165_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
WP_010929845.1|3760175_3760517_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
WP_010926403.1|3760629_3760830_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929843.1|3760826_3761816_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
WP_010929841.1|3763302_3765273_-	type III secretion system effector BopC	NA	NA	NA	NA	NA
WP_003814626.1|3765514_3765913_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929840.1|3765921_3766845_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3767302_3768253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927254.1|3768483_3770175_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_003816027.1|3770223_3770496_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_003816026.1|3770492_3770864_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816025.1|3770959_3771094_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_010929554.1|3771499_3772909_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_010929839.1|3772911_3774021_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929838.1|3774115_3776569_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_023853625.1|3776687_3777479_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929836.1|3777598_3779026_+	amidase	NA	NA	NA	NA	NA
WP_010929835.1|3779064_3780036_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929834.1|3780454_3781618_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929833.1|3781705_3782551_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3784107_3785058_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818201.1|3785612_3785987_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929807.1|3786061_3787120_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|3787143_3788094_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929808.1|3790975_3792145_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_062826576.1|3792245_3793853_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
3793598:3793615	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_010929810.1|3793899_3795921_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815955.1|3795949_3796195_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_004565905.1|3796208_3797399_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_010929811.1|3797594_3798560_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929812.1|3798582_3799722_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929813.1|3799933_3800896_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929814.1|3801019_3803044_+	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929815.1|3803240_3805484_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_003815964.1|3805762_3806221_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929816.1|3807148_3809770_-	GDYXXLXY domain-containing protein	NA	NA	NA	NA	NA
WP_010929817.1|3809833_3812461_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929818.1|3812612_3813677_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699616.1|3813676_3814447_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929819.1|3814455_3815289_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818225.1|3815301_3816081_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|3816154_3817588_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929821.1|3817615_3818374_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929822.1|3818429_3820280_-	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929823.1|3820373_3820850_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853391.1|3820866_3821787_-	bestrophin	NA	NA	NA	NA	NA
WP_003818232.1|3821893_3822394_+	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA	NA
WP_010929826.1|3822767_3823460_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_010929591.1|3823768_3824719_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931556.1|3824715_3828489_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010931557.1|3828825_3830715_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931558.1|3830726_3831620_+	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931559.1|3831723_3832521_+	thiazole synthase	NA	NA	NA	NA	NA
WP_010931560.1|3832517_3833369_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003817656.1|3833430_3834111_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_019248789.1|3834147_3834474_+	TolC family protein	NA	NA	NA	NA	NA
WP_019247190.1|3834474_3835434_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_003815102.1|3835454_3835943_-	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_010931561.1|3836224_3837241_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP010841	Bordetella pertussis strain H380 chromosome, complete genome	4104286	4026457	4079889	4104286	transposase	Planktothrix_phage(40.0%)	45	NA	NA
WP_010931661.1|4026457_4027408_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4027577_4028804_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4029003_4029870_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4029862_4030825_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4030925_4031876_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4031974_4032925_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4033023_4033974_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4033970_4035464_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4035460_4038568_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4038564_4041633_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4041629_4042880_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4043060_4043822_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4043854_4044505_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4044507_4045347_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4045587_4046331_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4046413_4046761_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4046858_4047701_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4047745_4048633_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4048659_4048848_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4048945_4050403_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_019249116.1|4050389_4051916_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4051934_4052402_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4052401_4053424_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4053544_4054264_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4054339_4055440_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4055441_4056632_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4056751_4057768_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4058086_4058758_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4058754_4059663_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4059874_4060522_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4064373_4065450_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4065460_4066270_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4066359_4067133_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010929577.1|4067315_4068266_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4068154_4069177_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4069166_4070321_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4070360_4071773_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4071897_4072764_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4072765_4073590_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4073586_4074348_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4074428_4075115_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4075288_4076296_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4076292_4077072_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4077129_4078392_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4078938_4079889_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
